Family Search for PF10689 (DUF2496)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10689 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECA1172 pleiotropic regulatory protein RsmS from Pectobacterium atrosepticum SCRI1043
Aligns to 2:44 / 56 (76.8%), covers 100.0% of PF10689, 88.1 bits

• The rsmS (ybaM) mutation causes bypass suppression of the RsmAB post-transcriptional virulence regulation system in enterobacterial phytopathogens
  Monson, Scientific reports 2019
  • “...response to changing nutrient conditions. This work identified a new suppressor of an rsmB mutation ECA1172 or rsmS ( rsm B s uppressor). Mutants defective in rsmB (encoding a small regulatory RNA), show reduced elaboration of the quorum sensing molecule ( N -3-oxohexanoyl-homoserine lactone; OHHL) and...”
  • “...(caseinase) production were selected for further analysis. From this screen, transposon insertions in priC and ECA1172 , a small open reading frame (ORF) of unknown function immediately downstream of priC , were identified. We demonstrated that suppression of rsmB was via mutation in ECA1172 , a...”

YbaM / b0466 DUF2496 domain-containing protein YbaM from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b0466 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:44 / 53 (81.1%), covers 100.0% of PF10689, 83.7 bits

• The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules
  Root-Bernstein, International journal of molecular sciences 2019
  • “...Mean Similarity Length Mean Identity Length b4626 83 2 632 568 550 7.6 7 6.6 b0466 241 1 3325 2326 1886 13.8 9.6 7.8 b4631 83 1 948 791 672 11.4 9.5 8.1 b4509 127 3 1545 1234 1101 12.1 9.7 8.7 b4515 127 1 1428...”

VP1004 conserved hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 8:50 / 54 (79.6%), covers 100.0% of PF10689, 82.4 bits

• L-arabinose affects the growth, biofilm formation, motility, c-di-GMP metabolism, and global gene expression of Vibrio parahaemolyticus
  Zhang, Journal of bacteriology 2023 (secret)

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