Family Search for PF10697 (DUF2502)
PF10697 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YPTB2704 putative exported protein from Yersinia pseudotuberculosis IP 32953
YPO2981 putative exported protein from Yersinia pestis CO92
Aligns to 39:126 / 137 (64.2%), covers 100.0% of PF10697, 143.8 bits
YPTB2334 putative exported protein from Yersinia pseudotuberculosis IP 32953
Aligns to 23:128 / 151 (70.2%), covers 95.6% of PF10697, 120.9 bits
YPO2426 putative exported protein from Yersinia pestis CO92
Aligns to 23:129 / 152 (70.4%), covers 95.6% of PF10697, 120.7 bits
SMDB11_2817 DUF2502 domain-containing protein from Serratia marcescens subsp. marcescens Db11
Aligns to 28:120 / 136 (68.4%), covers 96.7% of PF10697, 103.6 bits
- The Short-chain Fatty Acid Propionic Acid Activates the Rcs Stress Response System Partially through Inhibition of d-Alanine Racemase
Harshaw, mSphere 2023 - “...-gfp 73 pMQ747 pMQ713 with SMDB11_1637 ( osmB ) promoter-l uxCDABE 29 pMQ748 pMQ713 with SMDB11_2817 promoter-l uxCDABE 29 pMQ749 pMQ713 with umoD promoter luxCDABE 29 pMQ802 pMQ414 with pHLuorin2 replacing tdtomato , codon optimized for S. marcescens This study pKD4 Source of kanamycin resistance marker...”
- “...recently shown to activate Rcs in this strain ( 29 ). These promoters, namely, P SMDB11_2817 and P umoD , are also highly responsive to propionic acid in the WT background but are minimally or not activated in the rcsB mutant ( Fig.3 ). FIG3 Propionic...”
- Antibiotics Used in Empiric Treatment of Ocular Infections Trigger the Bacterial Rcs Stress Response System Independent of Antibiotic Susceptibility
Harshaw, Antibiotics (Basel, Switzerland) 2021 - “...vector ( Figure 2 A and Figure S1 ). The promoters were for the SMDB11_1637, SMDB11_2817, and SMDB11_1194 open reading frames. All of these previously uncharacterized open reading frames bear high similarity to Rcs-regulated genes in other bacteria. SMDB11_1637 is similar to osmotically inducible lipoprotein B...”
- “...in P. mirabilis [ 27 ], as is its ortholog YPO1624 in Y. pseudotuberculosis . SMDB11_2817 has similarity to yaaX from E. coli with the DUF2502 domain of unknown function and was identified as an RcsB-regulated gene in E. coli [ 25 ]. In addition, the...”
STM2407 putative periplasmic protein from Salmonella typhimurium LT2
t0450 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
T_RS02280 DUF2502 domain-containing protein YpeC from Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Aligns to 23:106 / 108 (77.8%), covers 100.0% of PF10697, 95.8 bits
YpeC / b2390 DUF2502 domain-containing protein YpeC from Escherichia coli K-12 substr. MG1655 (see paper)
ECs3270 hypothetical protein from Escherichia coli O157:H7 str. Sakai
b2390 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Z3656 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 23:108 / 108 (79.6%), covers 100.0% of PF10697, 85.4 bits
KP1_3995 hypothetical protein from Klebsiella pneumoniae NTUH-K2044
KPN_02742 hypothetical protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 23:114 / 119 (77.3%), covers 93.3% of PF10697, 60.8 bits
S0005 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 22:94 / 95 (76.8%), covers 67.8% of PF10697, 52.5 bits
Z0005 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 25:97 / 98 (74.5%), covers 98.9% of PF10697, 52.3 bits
- Genome mining of novel rubiginones from Streptomyces sp. CB02414 and characterization of the post-PKS modification steps in rubiginone biosynthesis
Zhang, Microbial cell factories 2021 - “...by in-frame deletion [ 26 ], to generate mutant strains Z0004 (i.e., CB02414 rubN1 ), Z0005 (i.e., CB02414 rubN2 ), and Z0008 (i.e., CB02414 rubM4 ) (Additional file 1 : Fig. S53). The respective genes were cloned into the pSET152 plasmid under the ermE * promoter...”
- “...that RubN1 is responsible for the introduction of the -hydroxyl group at C-2. Similarly, the Z0005 mutant only produced compounds 3 , 6 , and 7 , which lack the C-4 hydroxyl group, and the production of the other five compounds (rubiginones J, K, A 2...”
- Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism
Sharma, BMC microbiology 2017 - “...protein +2.83 0.04 Z3305 Bacteriophage CP-933V encoded protein 1.62 0.01 Z4330 Transposase +1.94 0.03 Hypothetical Z0005 Unknown 7.49 4.7E-08 yagU Z0353 Putative acid resistance 2.29 0.004 yagY Z0359 Predicted pilus chaperone (cryptic) 2.13 0.04 yagZ Z0360 Predicted pilus major subunit 2.83 0.001 yaiY Z0475 Predicted inner...”
AAF13_RS18930 DUF2502 domain-containing protein from Escherichia coli O104:H4 str. C227-11
Aligns to 25:97 / 98 (74.5%), covers 67.8% of PF10697, 52.0 bits
YaaX / b0005 DUF2502 domain-containing protein YaaX from Escherichia coli K-12 substr. MG1655 (see paper)
b0005 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 25:97 / 98 (74.5%), covers 67.8% of PF10697, 51.8 bits
- Global analysis of extracytoplasmic stress signaling in Escherichia coli
Bury-Moné, PLoS genetics 2009 - “...H wcaB H b2062-58 Colanic acid biosynthesis and secretion 1.6; -; 1.9; -; - yaaX b0005 Putative periplasmic protein protein 1.9 wcaC F H wcaD F H wcaE F H wcaF FH gmd F fcl F nudD F H wcaI FH cpsB H cpsG H wcaJ...”
- The BaeSR two-component regulatory system mediates resistance to condensed tannins in Escherichia coli
Zoetendal, Applied and environmental microbiology 2008 - “...15.3 27.6 22.5 b1532 b1530 marB marR 2.6 2.6 21.5 27.4 b0005 b2390 b0618 b3687 b3686 b3238 b2675 yaaX ypeC citC ibpA ibpB yhcN nrdE 4.9 2.8 34.6 6.9 9.5 3.1...”
- A functional update of the Escherichia coli K-12 genome
Serres, Genome biology 2001 - “...leader peptide b0050 ec_0078 apaG o Conserved protein b0081 ec_0123 mraZ o Conserved hypothetical protein b0005 ec_G0005 yaaX o Unknown CDS * Gene product type: c, carrier; e, enzyme; f, factor; h, extrachromosomal origin; l, leader peptide; m, membrane component; n, RNA; o, ORF of unknown...”
- Web-based visualization tools for bacterial genome alignments
Florea, Nucleic acids research 2000 - “...same, contiguous fragment from the other genome. For example, the gene b0005 (at ~5 kb in ECO) is simply deleted from STM. A blue vertical stripe at the end of...”
Or search for genetic data about PF10697 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory