Family Search for PF10709 (DUF2511)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10709 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YebY / b1839 DUF2511 domain-containing protein YebY from Escherichia coli K-12 substr. MG1655 (see paper)
b1839 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 26:113 / 113 (77.9%), covers 100.0% of PF10709, 153.6 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• High-throughput comparison of gene fitness among related bacteria
  Canals, BMC genomics 2012
  • “...STM1809 t1068 18 14 39 30 43 58 59 70 STM14_2278 Hypothetical protein STM1873 t1004 b1839 14 13 37 57 48 28 54 38 STM14_2685 Putative 1,2-dioxygenase STM2178 t0677 15 18 32 33 31 29 24 32 STM14_2708.RJ Putative DNA-binding protein STM2195 t0660 17 15 51...”
• Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli
  Boysen, The Journal of biological chemistry 2010
  • “...defense systems sodB b1656 Superoxide dismutase, iron yebY b1839 Predicted protein yebZ b1840 Putative resistance protein b1841 Conserved protein yobA f folE...”
  • “...-1.59 -1.56 0.022 0.000 0.048 yebY yebZ yobA b1839 b1840 b1841 Predicted protein Putative resistance protein Conserved protein -3.59 -2.13 -1.39 0.003 0.041...”
• Identification of Escherichia coli genes that are specifically expressed in a murine model of septicemic infection
  Khan, Infection and immunity 2002
  • “...yfhH ycaJ f178 375 o425 ycjF o423 b2434 b2362 b1839 o416 60.095 3.846 33.912 58.123 20.202 38.94 87.043 87.551 29.823 78.000 54.96 53.3 41.4 85.66 Hypothetical...”

c2249 Hypothetical protein yebY precursor from Escherichia coli CFT073
Aligns to 26:113 / 113 (77.9%), covers 100.0% of PF10709, 152.3 bits

• Human PRH1, PRH2 susceptibility and resistance and Streptococcus mutans virulence phenotypes specify different microbial profiles in caries
  Sheng, EBioMedicine 2024 (no snippet)
• Proteomics integrated with Escherichia coli vector-based vaccines and antigen microarrays reveals the immunogenicity of a surface sialidase-like protein of Propionibacterium acnes
  Huang, Proteomics - Clinical Applications 2008

KPN_02356 hypothetical protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 25:112 / 112 (78.6%), covers 100.0% of PF10709, 146.0 bits

• Functional Genomic Screen Identifies Klebsiella pneumoniae Factors Implicated in Blocking Nuclear Factor κB (NF-κB) Signaling
  Tomás, The Journal of biological chemistry 2015
  • “...KPN_02043 Y/Y P022H9 Between putative enzyme and hypothetical protein KpST66_3460 and KpST66_3461 Between KPN_02355 and KPN_02356 Y/Y P025H3 Between putative transcriptional regulator and putative arylsulfatase regulator KpST66_4042 Between KPN_02830 and KPN_02831 Y/Y P050B12 Between iap and cysH KpST66_0997 and KpST66_0998 Between KPN_03116 and KPN_03117 Y/Y P005D9...”

STM14_2278 YebY family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
STM1873 putative periplasmic or exported protein from Salmonella typhimurium LT2
Aligns to 25:112 / 117 (75.2%), covers 100.0% of PF10709, 138.9 bits

• High-throughput comparison of gene fitness among related bacteria
  Canals, BMC genomics 2012
  • “...d gsnB Putative cytoplasmic protein STM1809 t1068 18 14 39 30 43 58 59 70 STM14_2278 Hypothetical protein STM1873 t1004 b1839 14 13 37 57 48 28 54 38 STM14_2685 Putative 1,2-dioxygenase STM2178 t0677 15 18 32 33 31 29 24 32 STM14_2708.RJ Putative DNA-binding protein...”
• High-throughput comparison of gene fitness among related bacteria
  Canals, BMC genomics 2012
  • “...cytoplasmic protein STM1809 t1068 18 14 39 30 43 58 59 70 STM14_2278 Hypothetical protein STM1873 t1004 b1839 14 13 37 57 48 28 54 38 STM14_2685 Putative 1,2-dioxygenase STM2178 t0677 15 18 32 33 31 29 24 32 STM14_2708.RJ Putative DNA-binding protein STM2195 t0660 17...”
• Insertion hot spot for horizontally acquired DNA within a bidirectional small-RNA locus in Salmonella enterica
  Balbontín, Journal of bacteriology 2008
  • “...named pphA) and the ortholog of the yebY locus (STM1873) (Fig. 1). Recently, the prpA-yebY intergenic region of E. coli was shown to contain two small-RNA...”

t1004 putative exported protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 25:112 / 117 (75.2%), covers 100.0% of PF10709, 138.3 bits

• High-throughput comparison of gene fitness among related bacteria
  Canals, BMC genomics 2012
  • “...protein STM1809 t1068 18 14 39 30 43 58 59 70 STM14_2278 Hypothetical protein STM1873 t1004 b1839 14 13 37 57 48 28 54 38 STM14_2685 Putative 1,2-dioxygenase STM2178 t0677 15 18 32 33 31 29 24 32 STM14_2708.RJ Putative DNA-binding protein STM2195 t0660 17 15...”

Z2967 unknown protein encoded by prophage CP-933T from Escherichia coli O157:H7 EDL933
ECs2618 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 27:113 / 115 (75.7%), covers 98.9% of PF10709, 28.4 bits

• The LysR-type regulator QseA regulates both characterized and putative virulence genes in enterohaemorrhagic Escherichia coli O157:H7
  Kendall, Molecular microbiology 2010
  • “...0.0005 eaeA (LEE 5) 2 0.0005 Z5212 4 0.0021 Z5213 5 0.0005 Z5214 6 0.0027 Z2967 83,000 0.0003 Z2968 1794 0.0008 Z2969 1224 0.0008 Z2971 10,711 0.0001 Z2972 1683 0.0001 Z2973 65,566 0.0001 Z2974 3577 0.0001 Z2975 2592 0.0189 Z2976 1310 0.0087 Z2977 487 0.0059 Z4181...”
• A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China
  Xiong, PloS one 2012
  • “...Gain/Lost Locus_tag # Start End Gene Xuzhou21 Lost ECs2617 2593128 2594129 putative integrase Xuzhou21 Lost ECs2618 2594135 2594482 hypothetical protein Xuzhou21 Lost ECs2619 2594512 2595162 hypothetical protein Xuzhou21 Lost ECs2620 2595178 2595582 putative transcriptional regulator Xuzhou21 Lost ECs2621 2595672 2595809 hypothetical protein Xuzhou21 Lost ECs2622 2595881...”

Or search for genetic data about PF10709 in the Fitness Browser