Family Search for PF10713 (DUF2509)

Running HMMer for PF10713

PF10713 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO1016 putative membrane protein from Yersinia pestis CO92
Aligns to 17:154 / 156 (88.5%), covers 99.2% of PF10713, 148.7 bits

• Two Distinct Yersinia pestis Populations Causing Plague among Humans in the West Nile Region of Uganda
  Respicio-Kingry, PLoS neglected tropical diseases 2016
  • “...West Nile region of Uganda. SNP a SNP Group ypo3237; s376 ypo1821; s1427 ypo2837; s357 ypo1016; s1333 ypo3726; s949 ypo3098; s860 ypo3878; s968 ypo0829; s272 ypo0064; s447 No. (%) of strains 1 G A A A T T A G C 22 (36) 2 G A...”

YgdB / b2824 DUF2509 domain-containing protein YgdB from Escherichia coli K-12 substr. MG1655 (see paper)
b2824 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 15:132 / 135 (87.4%), covers 100.0% of PF10713, 135.0 bits

• Sxy induces a CRP-S regulon in Escherichia coli
  Sinha, Journal of bacteriology 2009
  • “...30.59 39.37 29 30 30 30 30 31 32 b4339 b2823 b2824 b2825 b2826 b2272 b3647 yjiP ppdC ygdB ppdB ppdA yfbM ligB 34.81 9.93 31.05 19.50 109.9 45.84 46.38 33 34...”
  • “...ycaI (b0913) ybaV (b0442) ppdA (b2826) ppdB (b2825) ydgB (b2824) ppdC (b2823) smf (b4473) yifB (b3765) yicR (b3638) ssb (b4059) gntY (b3414) comG ssb radC comM...”

S3032 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 15:132 / 135 (87.4%), covers 100.0% of PF10713, 133.3 bits

• Genetic structure of Neisseria meningitidis populations in relation to serogroup, serotype, and outer membrane protein pattern
  Caugant, Journal of bacteriology 1987
  • “...8 1 2 2 1 2 2 3 3 3 3 2 2 2 2 7 5 8 2 252 S3032 254 HF200 3 6 3 3 2 4 3 9 4 4 1 1 2 3 2 2 1 1 1 2 2 2 3 3 2 2 5 6 El E2 E3 E4 E5...”

STM2998 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 15:132 / 135 (87.4%), covers 100.0% of PF10713, 129.5 bits

• Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice
  Periaswamy, PloS one 2012
  • “...the isogenic parental strain M2735 ( ssaV::cat; WITS 17) and; ssaV STM2616 (WITS 1), ssaV STM2998 (WITS 2), ssaV STM2011 (WITS11), ssaV STM2231 (WITS13), ssaV STM2570 (WITS19). Real-time PCR analysis of the sequence tags established the relative abundance of Z234 (black symbols) as compared to the...”

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