Family Search for PF10721 (DUF2514)

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PF10721 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PP1584, PP_1584 hypothetical protein from Pseudomonas putida KT2440
Aligns to 4:164 / 166 (97.0%), covers 99.4% of PF10721, 206.0 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023
• The impact of quorum sensing on the modulation of phage-host interactions
  León-Félix, Journal of bacteriology 2021 (secret)
• Stability of a Pseudomonas putida KT2440 bacteriophage-carried genomic island and its impact on rhizosphere fitness
  Quesada, Applied and environmental microbiology 2012
  • “...genome (61.6%). Pspu28 contains 53 ORFs, from PP1532 to PP1584 (Table 2; also see Data Set S1 in the supplemental material), which share significant sequence...”
  • “...wide intergenic region, 658 bp in length, between PP_1584 and PP_1585 (Fig. 4A). A 17-bp direct repeat (5=TACGGCATCAAAGCCTG-3=) was identified in attL and attR...”

Psyr_2766 hypothetical protein from Pseudomonas syringae pv. syringae B728a
Aligns to 6:169 / 175 (93.7%), covers 96.9% of PF10721, 158.7 bits

• Involvement of rppH in thermoregulation in Pseudomonas syringae
  Hockett, Journal of bacteriology 2014
  • “...and IS elements Psyr_1030 a b nfrB Psyr_2764 Psyr_2766 Psyr_2805 Psyr_2806 NAb NA NA NA Psyr_2807 Psyr_2808 Psyr_2809 Psyr_2810 Psyr_2811 Psyr_2816 Psyr_2817...”

PsyrH_15255 DUF2514 domain-containing protein from Pseudomonas syringae pv. syringae HS191
Aligns to 6:169 / 176 (93.2%), covers 95.7% of PF10721, 151.7 bits

• Comparative genomics of Pseudomonas syringae pv. syringae strains B301D and HS191 and insights into intrapathovar traits associated with plant pathogenesis
  Ravindran, MicrobiologyOpen 2015
  • “...PsyrH_07730 to 07780, PsyrH_12215 to 12310, PsyrH_12835 to 12930, PsyrH_13200 to 13255, PsyrH_14330 to 14550, PsyrH_15255 to 15590, PsyrH_19710 to 19870, PsyrH_20080 to 20200, PsyrH_21620 to 21695, PsyrH_23835 to 23905, PsyrH_25190 to 25250, and PsyrH_26230 to 26290) that are absent in both the B728a and B301D...”

YP_512284 Rz-like spanin from Escherichia phage phiV10
YP_512284 putative lysis accessory protein from Phage phiV10
Aligns to 10:160 / 160 (94.4%), covers 99.4% of PF10721, 150.7 bits

• The genome of epsilon15, a serotype-converting, Group E1 Salmonella enterica-specific bacteriophage
  Kropinski, Virology 2007
  • “...(putative) 86.2 E. coli phage V10 gene = PhiV10p30 [ YP_512284 ] 26A 26,337 26,612 + 9633, 8.4 1 TMD; PS00013 - lipoprotein Rz1 homolog 85.7 E. coli phage...”

SEN_RS06020 DUF2514 domain-containing protein from Salmonella enterica subsp. enterica serovar Enteritidis str.
Aligns to 12:170 / 177 (89.8%), covers 100.0% of PF10721, 150.1 bits

• AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity
  Guard, Microorganisms 2021
  • “...SEEG 1 bp deletion steC SEEG pseudogene secreted effector kinase SteC virulence factor STM1869 SEEG9184_14565 SEN_RS06020 SEEG 1 bp deletion unnamed SEEG pseudogene HO protein phage associated STM1939 SEEG9184_15200 SEN_RS05535 SEEG 1 bp deletion unnamed SEEG pseudogene putative glucose-6-phosphate dehydrogenase metabolism STM2129 SEEG9184_09800 SEN_RS11065 SEEG 1...”

SPN1S_0029 Rz-like spanin from Salmonella phage SPN1S
Aligns to 10:160 / 160 (94.4%), covers 100.0% of PF10721, 148.6 bits

• Development of a Novel Chimeric Endolysin, Lys109 With Enhanced Lytic Activity Against Staphylococcus aureus
  Son, Frontiers in microbiology 2020
  • “...lysis zone. Library Construction for Random Domain Swapping The gene encoding SPN1S lysRz (SPN1S_0028 and SPN1S_0029) was amplified from Salmonella Typhimurium phage SPN1S (GenBank accession number NC_016761 ) using the oligonucleotides listed in Supplementary Table S1 . The gene fragment was digested with Eco RI- Sal...”

STM1869 Homology to phage-tail assembly proteins from Salmonella typhimurium LT2
STM14_2272 DUF2514 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 12:170 / 177 (89.8%), covers 100.0% of PF10721, 148.0 bits

• AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity
  Guard, Microorganisms 2021
  • “...SEEG9184_13605 SEN_RS06925 SEEG 1 bp deletion steC SEEG pseudogene secreted effector kinase SteC virulence factor STM1869 SEEG9184_14565 SEN_RS06020 SEEG 1 bp deletion unnamed SEEG pseudogene HO protein phage associated STM1939 SEEG9184_15200 SEN_RS05535 SEEG 1 bp deletion unnamed SEEG pseudogene putative glucose-6-phosphate dehydrogenase metabolism STM2129 SEEG9184_09800 SEN_RS11065...”
• Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
  Han, Heliyon 2020
  • “...1 0.008 STM1011 Gifsy-2 prophage protein 1.8 0.006 STM1868A Lytic enzyme 3.8 0.006 2.9 0.009 STM1869 Phage-tail assembly-like protein; head-tail joining protein 1.4 0.004 1.3 0.005 STM2237 Phage holin, lambda family 1.4 0.005 STM2243 Putative tail fiber protein of phage 1 0.006 STM2601 Minor capsid protein...”
• Salmonella serovar identification using PCR-based detection of gene presence and absence
  Arrach, Journal of clinical microbiology 2008
  • “...STM1045, STM1521, STM1534, STM1549, STM1579, STM1673, STM1869, STM1869A, STM2030, STM2033, STM2055, STM2094, STM2177, STM2438, STM2591, STM2601, STM2700,...”
• Integrative DNA methylome and transcriptome analysis reveals DNA adenine methylation is involved in Salmonella enterica Typhimurium response to oxidative stress
  Zhang, Microbiology spectrum 2023
  • “...Methyl viologen resistance STM14_1904 0.96 0.0095 Hypothetical protein STM14_1904 STM14_2065 0.83 0.04 Hypothetical protein STM14_2065 STM14_2272 0.98 0.00066 Phage-tail assembly-like protein STM14_2807 0.77 0.044 Putative dehydratase STM14_3294 smpB 0.89 0.007 SsrA-binding protein STM14_3338 fljB 0.78 0.038 Flagellin STM14_4269 0.83 0.022 Hypothetical protein STM14_4269 STM14_5330 cybC 0.94...”

RzpQ / b1553 Qin prophage; DUF2514 domain-containing protein RzpQ from Escherichia coli K-12 substr. MG1655 (see paper)
EC1303_c16730 DUF2514 domain-containing protein from Escherichia coli 1303
b1553 Qin prophage; conserved protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:160 / 165 (96.4%), covers 98.1% of PF10721, 133.8 bits

• No evidence for a bovine mastitis Escherichia coli pathotype
  Leimbach, BMC genomics 2017
  • “...located in close proximity to each other in the genome of strain 1303 ( rzpQ EC1303_c16730, ydfR EC1303_c16750, quuQ_1 EC1303_c16790 (paralog to quuQ _2 in 1303 prophage 4), relE EC1303_c16830, relB EC1303_c16840, flxA EC1303_c16860, putative integrase EC1303_c16890, and hypothetical protein EC1303_c16900). All of these proteins belong...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli
  DeLisa, Journal of bacteriology 2001
  • “...4.4 b1553 ................................................................................... 4.7 ybgF...”

BTH_II1067 gp23 from Burkholderia thailandensis E264
Aligns to 36:189 / 193 (79.8%), covers 99.4% of PF10721, 71.9 bits

• Characterization of the Burkholderia thailandensis SOS response by using whole-transcriptome shotgun sequencing
  Ulrich, Applied and environmental microbiology 2013
  • “...BTH_II1062 BTH_II1063 BTH_II1064 BTH_II1065 BTH_II1066 BTH_II1067 BTH_II1068 BTH_II1069 BTH_II1070 Integrase-like protein Gp38 Gp44 Hypothetical protein Gp41...”

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