Family Search for PF10725 (DUF2517)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10725 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SMWW4_v1c12140 YbfA family protein from Serratia marcescens WW4
Aligns to 5:65 / 69 (88.4%), covers 98.4% of PF10725, 119.4 bits

• Improving prodigiosin production by transcription factor engineering and promoter engineering in Serratia marcescens
  Pan, Frontiers in microbiology 2022
  • “...21 30S ribosomal subunit protein S6 5404.0175 rpsM 22 30S ribosomal subunit protein S13 5304.5475 SMWW4_v1c12140 23 Hypothetical protein 1975.2125 SMWW4_v1c29250 24 Hypothetical protein 2818.635 sodB 25 Superoxide dismutase 2468.105 tpiA 26 Triosephosphate isomerase 2013.625 trxA 27 Thioredoxin 1 1508.045 uspG 28 Universal stress protein UP12...”
  • “..., raiA , rplJ , rpoB , rpoH , rpsA , rpsF , rpsM , SMWW4_v1c12140 , SMWW4_v1c29250 , sodB , tpiA , trxA , uspG , ybaY , yccA , yfiD , ygdI , and bla gene, respectively. For (A) and (B) , the experiment...”

STM0708 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 4:64 / 68 (89.7%), covers 98.4% of PF10725, 118.0 bits

• In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection
  Marchal, Genome biology 2004
  • “...protein; Homolog of ail and ompX 0.756369 CATTAGGTGCTCTTAAT / / 1000 Some Salmonella only ybfA/STM0707 STM0708 ; Ortholog of E. coli orf , hypothetical protein (AAC73793.1); Blast hit to putative periplasmic protein; intergenic shared with STM0707 (hypothetical protein) 0.754265 ATTAGTATTAATTTAAC m + 1111 All nine genomes?...”

YbfA / b0699 DUF2517 domain-containing protein YbfA from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b0699 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
ECs0728 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 4:64 / 68 (89.7%), covers 98.4% of PF10725, 117.1 bits

• Medium-Chain-Length Fatty Acid Catabolism in Cupriavidus necator H16: Transcriptome Sequencing Reveals Differences from Long-Chain-Length Fatty Acid β-Oxidation and Involvement of Several Homologous Genes
  Strittmatter, Applied and environmental microbiology 2023 (secret)
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...b2667 rplC rplY rpmC rpsJ trmD b2797 b2796 b0349 b0699 b1759 b3983 b0218 b3984 b3184 b0574 b1445 b1035 b4162 b3986 b3316 b3985 b3313 b3314 b0719 b3317 b3315...”
• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs0478 ECs0514 ECs0552 ECs0561 ECs0629 ECs0646 ECs0661 ECs0728 ECs0781 ECs0896 ECs0963 ECs1068 ECs1091 ECs1180 ECs1181 ECs1182 ECs1183 ECs1184 ECs1197 ECs1198...”

Or search for genetic data about PF10725 in the Fitness Browser