Family Search for PF10733 (DUF2525)

Running HMMer for PF10733

PF10733 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM14_2405 YodD family peroxide/acid resistance protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 18:75 / 75 (77.3%), covers 100.0% of PF10733, 118.5 bits

• Proteome remodelling by the stress sigma factor RpoS/σ^S in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
  Lago, Scientific reports 2017
  • “...88% identity with E . coli YebV, DUF1480 IPR009950 78 Yes yebV 13, 14 Enterobacteriaceae STM14_2405 DUF2525 IPR019669 75 Yes yodD 1114 Enterobacteriaceae STM14_2409 Start codon re-annotated, 83% identity with E . coli YodC, DUF2158 IPR019226 61 Yes yodC 11, 13, 14 -, -, - Proteobacteria...”

YodD / b1953 stress-induced protein from Escherichia coli K-12 substr. MG1655 (see paper)
b1953 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 18:75 / 75 (77.3%), covers 100.0% of PF10733, 118.3 bits

• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b4247 b4263 b4310 b1165 b1449 b1678 b1758 b1957 b1953 b2137 b3097 b3098 b3099 b3102 b3100 Conserved hypothetical protein Putative 4Fe-4S ferredoxin-type protein...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b1667 b1678 b1725 b1778 b1783 b1816 b1869 b1870 b1871 b1953 b1955 b2007 b2080 b2098 b2112 b2122 b2127 b2135 b2299 b0305 b0358 b0458 b0485 b0572 b0573 b0581...”
  • “...b1598 b1667 b1678 b1725 b1778 b1783 b1816 b1869 b1870 b1871 b1953 b1955 b2007 b2080 b2098 b2112 b2122 b2127 b2135 b2299 2.2 2.2 3.5 2.6 3.5 2.6 2.7 2.1 6.8...”

ECs2692 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 19:76 / 76 (76.3%), covers 100.0% of PF10733, 118.2 bits

• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs2536 ECs2544 ECs2558 ECs2581 ECs2614 ECs2622 ECs2623 ECs2692 ECs2714 ECs2737 ECs2758 ECs2759 ECs2987 ECs3105 ECs3264 ECs3267 ECs3270 ECs3355 ECs3358 ECs3426...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...osmE 2.33 2 ECs0800 ybhC -2.13 1 ECs2510 yeaV 2.06 3 ECs0814 O157 -2.15 1 ECs2692 yodD 2.96 2 ECs0869 ybhQ 3.14 2 ECs2714 espJ -2.01 1 ECs0890 dps 2.64 2 ECs2737 pchC 3.43 2 ECs0943 artJ -2.81 1 ECs2814 yeeD -2.09 1 ECs0966 cspD 2.75...”

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