Family Search for PF10807 (DUF2541)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10807 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM0011 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 3:132 / 134 (97.0%), covers 100.0% of PF10807, 277.6 bits

• Novel Two-Step Hierarchical Screening of Mutant Pools Reveals Mutants under Selection in Chicks
  Yang, Infection and immunity 2016
  • “...mutant STM0002-0011 contains a deletion of genes STM0002 to STM0011. b MGD mutant consistently under selection during all time points (day 1 to day 9). c MGD...”
  • “...colonization mutants assayed, 3 of the 11 (STM0002 to STM0011, STM3603 to STM3651, and STM4416 to STM4467) had growth defects in M9 minimal media at 41C (see...”

SPA0011 hypothetical protein from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
t0011 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 3:132 / 134 (97.0%), covers 100.0% of PF10807, 275.5 bits

• Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs
  Ferrara, PloS one 2012
  • “...d Notes e Unique A SPA0002 I 2326/2327 MRE SPA0003 I 2729/2730 + 80 B SPA0011 I 30840/ trbI + 20 SPA0012 I 39480/39500 + 240 SPA0013 I 44640/44650 40 SPA0014 I 49480/49500 + 80 SPA0015 I 60120/60130 MRE SPA0016 I 72510/72520 40 SPA0017 III trbL...”
  • “...which a major signal was clearly visible by Northern hybridization. Moreover, in some cases (i.e. SPA0011, 0013, 0018, 0157, 0167, 0168), the regions covered by the reads were smaller than the observed transcripts. As samples preparation for sRNA-Seq included an RNase H digestion step, unspecific RNA...”
• Gene Networks Analysis of Salmonella Typhimurium Reveals New Insights on Key Genes Involved in Response to Low Water Activity
  Davati, Iranian journal of biotechnology 2023
  • “..., such as nrfA encoding the Cytochrome c552 precursor and yaaI encoding the Hypothetical protein t0011, were down-regulated under hyperosmotic conditions. They reported that most of these genes are associated with enzymes involved in metabolic pathways. Bacteria employ proline as an essential organic compatible solute for...”

YaaI / b0013 DUF2541 domain-containing protein YaaI from Escherichia coli K-12 substr. MG1655 (see paper)
b0013 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P28696 UPF0412 protein YaaI from Escherichia coli (strain K12)
Aligns to 3:132 / 134 (97.0%), covers 100.0% of PF10807, 243.5 bits

• A novel strategy for production of ethanol and recovery of xylose from simulated corncob hydrolysate
  Sun, Biotechnology letters 2018
• [High-efficiency L-lactate production from glycerol by metabolically engineered Escherichia coli]
  Tian, Sheng wu gong cheng xue bao = Chinese journal of biotechnology 2013 (PubMed) (secret)
• [Rational design and construction of an overproducing shikimic acid Escherichia coli by metabolic engineering]
  Li, Sheng wu gong cheng xue bao = Chinese journal of biotechnology 2013 (PubMed) (secret)
• [Temperature-switched high-efficiency D-lactate production from glycerol]
  Tian, Sheng wu gong cheng xue bao = Chinese journal of biotechnology 2013 (PubMed) (secret)
• [Elimination of succinate and acetate synthesis in recombinant Escherichia coli for D-lactate production]
  Zhou, Sheng wu gong cheng xue bao = Chinese journal of biotechnology 2011 (PubMed) (secret)
• Optimized Signal Peptide for Secretory Expression of Human Recombinant Somatropin in E. coli
  Ahmadi, Advanced pharmaceutical bulletin 2023
  • “...Escherichia coli (strain K12) P0AFL3 MFKSTLAAMAAVFALSALSPAAMA UPF0412 protein YaaI yaaI 23 Escherichia coli (strain K12) P28696 MKSVFTISASLAISLMLCCTAQA Uncharacterized protein YhcF yhcF 20 Escherichia coli (strain K12) P45422 MNNVKLLIAGSAFFAMSAQA Uncharacterized fimbrial-like protein YfcQ yfcQ 18 Escherichia coli (strain K12) P76500 MRKTFLTLLCVSSAIAHA Iron uptake system component EfeO EfeO...”

ECs0013 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 3:132 / 134 (97.0%), covers 100.0% of PF10807, 242.6 bits

• Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
  Shinhara, BMC genomics 2011
  • “...~95 [ 9 ] ~100 ~100 ECS0012 66 39.6 ybhJ predicted hydratase smear ~120 - ECS0013 67 38.1 rumA 23S ribosomal RNA 5-methyluridine methyltransferase ND ND - ECS0015 54 25.7 nudC NADH pyrophosphatase ND ND - ECS0017 92 22.3 ykgM & ykgO predicted ribosomal protein ~275...”

c0017 Hypothetical protein yaaI precursor from Escherichia coli CFT073
Aligns to 3:132 / 134 (97.0%), covers 100.0% of PF10807, 241.4 bits

• Vitamin D receptor enhances NLRC4 inflammasome activation by promoting NAIPs-NLRC4 association
  Chen, EMBO reports 2022 (secret)

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