Family Search for PF10832 (YhfG)

April 2024: GapMind for amino acid biosynthesis has been updated to include newly-discovered enzymes and comparative genomics predictions (see details)

PF10832 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

FMA85_20770, NRG857_16670 YhfG family protein from Escherichia coli
Aligns to 2:55 / 55 (98.2%), covers 100.0% of PF10832, 88.4 bits

• Genomic and Proteomic Characterization of the Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli Strain CCUG 73778: A Virulent, Nosocomial Outbreak Strain
  Jaén-Luchoro, Microorganisms 2020
  • “...case of TAS, toxins were mostly detected, with special mention to DUF1778 (FMA85_20310) and DUF2559 (FMA85_20770), which are proteins with unknown function. The importance of proteins with domains with unknown function has been increasing in recent years, as a huge percentage of proteins in bacteria have...”
• Repertoire and Diversity of Toxin - Antitoxin Systems of Crohn's Disease-Associated Adherent-Invasive Escherichia coli. New Insight of T his Emergent E. coli Pathotype
  Bustamante, Frontiers in microbiology 2020
  • “...PRK09974) PrlF-1 II TA26 NRG857_16665 c3,508,219.3,508,821 FIDO Superfamily, cell filamentation protein Fic (cl26489, PRK10347) Fic-1 NRG857_16670 c3,508,811.3,508,978 DUF2559 Superfamily (cl23922, PRK10204) YhfG-1 II TA27 NRG857_19405 4,121,686.4,121,997 NI RelE-1 NRG857_19410 4,121,998.4,122,288 YiaG Superfamily (cl27792) YiaG-1 II TA28 NRG857_21375 4,541,917.4,543,185 HipA_C Superfamily, HipA_C (cl26849, pfam07804) HipA_N (cl06714, pfam07805)...”

ESA_04371 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
ESA_04371 YhfG family protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 3:56 / 56 (96.4%), covers 100.0% of PF10832, 87.6 bits

• Prevalence, Distribution, and Phylogeny of Type Two Toxin-Antitoxin Genes Possessed by Cronobacter Species where C. sakazakii Homologs Follow Sequence Type Lineages
  Finkelstein, Microorganisms 2019
  • “...turicensis; ESA_00912 from the C. sakazakii strain E764; ESA_01146 from the C. sakazakii strain Es35; ESA_04371 from C. sakazakii strain ES15; and ESA_04372 from C. condimenti strain LMG 26250 T . Two plasmid TA homologs were represented on the microarray as FIG00554131: hypothetical protein (ESA_00912) and...”
  • “...death protein2C Phd antitoxin 14 T ESA_04289 Death on curing protein2C Doc toxin 13 A ESA_04371 FIG00553654: hypothetical protein 58 T ESA_04372 Cell filamentation protein fic 91 T ESA3p05543 hypothetical_protein 14 A ESA3p05544 hypothetical_protein 23...”

FicA / b3362 DUF2559 domain-containing protein YhfG from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ECs4213 hypothetical protein from Escherichia coli O157:H7 str. Sakai
b3362 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:55 / 55 (98.2%), covers 100.0% of PF10832, 86.3 bits

• Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling
  King, Molecular & cellular proteomics : MCP 2016
  • “..., ECs1692 , ECs2695 , ECs2785 , ECs2888 , ECs3588 , ECs4112 , yhfG / ECs4213 , ECs4323 , ysgA / ECs4760 , ECs5089 ). Cluster II contains genes involved in fatty acid and phospholipid metabolism ( fadA / ECs4773 , fadI / ECs3225 ). Genes...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...argD -2.36 1 ECs4774 fadB 6.58 2 ECs4212 fic 4.44 2 ECs4783 dsbA -2.15 1 ECs4213 yhfG 4.13 2 ECs4785 yihG 2.17 2 ECs4232 aroK -3.21 1 ECs4792 glnA -5.34 1 ECs4244 yhgE -3.33 1 ECs4793 yihK -2.43 1 ECs4278 asd -2.55 1 ECs4847 yiiS 2.66...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...4.65 5.65 3.80 OD 4 b2732 b2886 b2922 b3003 b3024 b3362 b3448 b3524 b4045 b4126 b4127 b4178 b4247 b4263 b4310 b1165 b1449 b1678 b1758 b1957 b1953 b2137 b3097...”
• Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
  Selinger, Genome research 2003
  • “...b0990 b3913 b0553 b2398 b3494 b3556 b3685 b0726 b1205 b3362 b0162 b1060 b2080 b2377 b3361 b4132 b4396 yjfN IldD cpxP(2) cspG cpxP(1) nmpC yfeC uspB cspA yidE...”

Or search for genetic data about PF10832 in the Fitness Browser