Family Search for PF10836 (DUF2574)

Running HMMer for PF10836

PF10836 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM2153 putative outer membrane protein from Salmonella typhimurium LT2
Aligns to 1:93 / 93 (100.0%), covers 100.0% of PF10836, 177.5 bits

• The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD
  Hung, Molecular microbiology 2013
  • “...STM4464 - 0.4 STM4465 - 0.4 STM2872 prgJ 0.4 STM3216 mcpC 0.4 STM1690 pspA 0.4 STM2153 yehE 0.4 STM2315 yfbK 0.4 STM2897 invE 0.4 STM0271 - 0.4 STM4265 soxS 0.4 STM1513 - 0.4 STM2879 sicP 0.4 STM1774 sirC 0.4 STM2880 - 0.4 STM1239 - 0.4 STM2875...”

SeAg_B2298 hypothetical protein from Salmonella enterica subsp. enterica serovar Agona str. SL483
Aligns to 1:93 / 93 (100.0%), covers 100.0% of PF10836, 176.3 bits

• Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona
  Zhou, PLoS genetics 2013
  • “...7B ) due to two non-synonymous mutations within a length of 282 bps. This CDS (SeAg_B2298) encodes a hypothetical protein of unknown function. We conclude that, similarly to the accessory genome, there are no significant traces of Darwinian selection for genetic diversity within core CDSs. And...”

YehE / b2112 DUF2574 domain-containing protein YehE from Escherichia coli K-12 substr. MG1655 (see paper)
b2112 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:93 / 93 (100.0%), covers 100.0% of PF10836, 175.7 bits

• Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones
  Lee, Applied and environmental microbiology 2009
  • “...b1536 b1629 b1690 b1729 b1784 b1955 b1967 b2014 b2080 b2112 b2135 b2165 b2660 b2654 b2655 b2658 b2672 b2809 b2856 b2857 b3099 b3170 b3184 b3260 b3512 b4068...”
• Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7
  Wick, Journal of bacteriology 2005
  • “...to -86), fimbrial protein genes (b2106, b2108, b2111, and b2112), genes for cold shock-like proteins (b1550 to -68 on qin), prophage P2 proteins (b2082 to -84),...”
  • “...that the K-12-specific fimbrial genes (b2106, b2108, b2111, and b2112) in the ancestral O55 strains were replaced by type 1 fimbrial genes (Fig. 4) in immediate...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b1816 b1869 b1870 b1871 b1953 b1955 b2007 b2080 b2098 b2112 b2122 b2127 b2135 b2299 b0305 b0358 b0458 b0485 b0572 b0573 b0581 b0600 b0607 b0643 b0662 b0707...”
  • “...b1778 b1783 b1816 b1869 b1870 b1871 b1953 b1955 b2007 b2080 b2098 b2112 b2122 b2127 b2135 b2299 2.2 2.2 3.5 2.6 3.5 2.6 2.7 2.1 6.8 5.3 2.2 3.7 2.5 2.4 2.5 2.7...”

UTI89_C2386 hypothetical protein YehE precursor from Escherichia coli UTI89
NRG857_10720 YehE family protein from Escherichia coli O83:H1 str. NRG 857C
Aligns to 1:93 / 93 (100.0%), covers 100.0% of PF10836, 172.3 bits

• Cathelicidin Peptides Restrict Bacterial Growth via Membrane Perturbation and Induction of Reactive Oxygen Species
  Rowe-Magnus, mBio 2019
  • “...torY UTI89_C3724 1.02 2.07E05 Hypothetical protein yrdA Decreased expression UTI89_C2748 1.06 1.64E03 Hypothetical protein ptsK UTI89_C2386 1.09 1.18E03 Hypothetical protein yehE UTI89_C2497 1.11 5.14E03 Outer membrane pore protein C ompC UTI89_C3587 1.14 1.92E03 Hypothetical protein yhbW UTI89_C1622 1.15 8.31E05 Heat shock protein HslJ hslJ UTI89_C2016 1.16...”
• Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes
  Nash, BMC genomics 2010
  • “...precursor 91 0.81 NRG857_10715 putative fimbrial-like adhesin protein ED1a putative fimbrial-like adhesin protein 89 0.82 NRG857_10720 hypothetical protein APEC O1 putative fimbrial-like adhesin protein 100 0.33 NRG857_11325 adhesin O157:H7 str. EC4115 putative outer membrane autotransporter adhesin 78 0.95 NRG857_11815 putative exported fimbrial-like adhesin protein S88 putative...”

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