Family Search for PF10840 (DUF2645)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10840 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YjeO / b4158 DUF2645 domain-containing inner membrane protein YjeO from Escherichia coli K-12 substr. MG1655 (see paper)
b4158 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 6:103 / 104 (94.2%), covers 100.0% of PF10840, 140.1 bits

• Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity
  Warda, PloS one 2016 (no snippet)
• Thirty-third Annual Meeting February 12 - 16, 1989 Albert B. Sabin Convention Center Cincinnati, Ohio : Monday, February 13, 1989, 3:00 p.m. - 6:10 p.m., Ballroom, Part 3
  , Biophysical journal 1989

YPO0754 putative membrane protein from Yersinia pestis CO92
Aligns to 3:100 / 100 (98.0%), covers 99.0% of PF10840, 121.8 bits

• Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics
  Califf, Microbial genomics 2015
  • “...Hypothetical protein YPO0747 YPO0749 Hypothetical protein YPO0749 YPO0750 Hypothetical protein YPO0750 YPO0751 Hypothetical protein YPO0751 YPO0754 Hypothetical protein YPO0754 YPO1380 MFS family transporter protein YPO1380 YPO2315 Hypothetical protein YPO2315 Pcp Lipoprotein YPO2373 YPO2375 Aldo/keto reductase YPO2375 YPO2376 Hypothetical protein YPO2376 sepC Insecticial toxin YPO2380 YPO2493 Dioxygenase...”
• Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen
  Chain, Journal of bacteriology 2006
  • “...large cluster of flagellar genes (YPO0738 to YPO0754), including the flagellar RNA polymerase sigma factor and chemotaxis membrane proteins. Functional...”
• Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis
  Hinchliffe, Genome research 2003
  • “...in that four multiple gene regions (YPO0738- YPO0754, YPO1165-YPO1172, YPO2271-YPO2281, and YPO2375-YPO2376) and the sepC gene (YPO2380) are absent from the...”

YgiZ / b3027 DUF2645 domain-containing inner membrane protein YgiZ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b3027 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 9:109 / 110 (91.8%), covers 95.9% of PF10840, 39.4 bits

• Nisin M: a Bioengineered Nisin A Variant That Retains Full Induction Capacity but Has Significantly Reduced Antimicrobial Activity
  O', Applied and environmental microbiology 2020 (secret)
• Use of enhanced nisin derivatives in combination with food-grade oils or citric acid to control Cronobacter sakazakii and Escherichia coli O157:H7
  Campion, Food microbiology 2017 (PubMed) (secret)
• Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis
  Goryshin, Genome research 2003
  • “...b1878-b1892 b2379 b2649-b2655 b2648-b2655 b2853-b2861 b3027 b3647 b3708-b3715 b4216 b4308-b4315 b4349-b4354 2.8 6.5-7.2 26.6-26.9 30.1-32.8 30.1-33.3...”

Or search for genetic data about PF10840 in the Fitness Browser