Family Search for PF10947 (DUF2628)

PF10947 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BR2082 hypothetical protein from Brucella suis 1330
BCAN_A2128 hypothetical protein from Brucella canis ATCC 23365
Aligns to 11:104 / 169 (55.6%), covers 92.0% of PF10947, 87.2 bits

• Identification and isolation of Brucella suis virulence genes involved in resistance to the human innate immune system
  Liautard, Infection and immunity 2007
  • “...in resistance to 99 T cells Attenuationa Clone BRA0042 BR2082 BR1274 BRA0251 BR1800 BRA0348 BRA0251 BR1622 Gene ? his? hom norD atpG pgm? norD omp31 Putative...”
• ATP-Binding Cassette Systems of Brucella
  Jenner, Comparative and functional genomics 2009
  • “...pstC BruAb12115, pstA BR2140 BOV_2054 BCAN_A2183, pstC MOI Phosphate import BP BMEI1989 BruAb12113 BR2138 BOV_2053 BCAN_A2128 42 MOI Molybdenum import ABC BMEII0003, modC BruAb20090 BRA0090, modC BOV_A0084 BCAN_B0093, ModC MOI Molybdenum import IM BMEII004, modB BruAb20089 BRA0089, modB BOV_A0083 BCAN_B0092, ModB MOI Molybdenum import BP BMEII0005...”

PMI1005 hypothetical protein from Proteus mirabilis HI4320
Aligns to 3:119 / 131 (89.3%), covers 89.8% of PF10947, 77.7 bits

• Transcriptome of swarming Proteus mirabilis
  Pearson, Infection and immunity 2010
  • “...PMI1835 PMI1661 PMI2385 PMI1665 PMI1645 PMI2196 PMI0876 PMI1005 PMI1657 PMI0272 PMI1248 PMI1635 PMI1670 PMI0276 PMI1662 PMI2383 PMI0029 fliA RNA polymerase...”

PSA3335_RS01395 DUF2628 domain-containing protein from Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Aligns to 6:128 / 141 (87.2%), covers 92.0% of PF10947, 66.7 bits

• HrpL Regulon of Bacterial Pathogen of Woody Host Pseudomonas savastanoi pv. savastanoi NCPPB 3335
  Moreno-Pérez, Microorganisms 2021
  • “...- 2523 nd PF07690 Others PSA3335_RS15760 Peptidyl-propyl cis-trans isomerase 91 no - 2506 nd PF00639 PSA3335_RS01395 DUF2628 domain-containing protein 141 no - 2501 nd PF10947 a Accession number in NCBI. # pseudogene. b Indicates whether identified genes are part of an operon or not and their...”

Psyr_4967 hypothetical protein from Pseudomonas syringae pv. syringae B728a
Aligns to 7:128 / 141 (86.5%), covers 93.2% of PF10947, 66.3 bits

• Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae
  Liu, BMC genomics 2020
  • “...OmpA/MotB protein / 2.83 PSYR_4965 hypothetical protein PSYR_4965 / 4.22 PSYR_4966 ImpA-like protein / 3.72 PSYR_4967 hypothetical protein PSYR_4967 / 2.8 PSYR_4974 Rhs element Vgr protein / 1.91 PSYR_4983 Rhs element Vgr protein / 2.54 DEGs were differentially expressed genes in the (p)ppGpp 0 Pst DC3000...”

B0MGE2 Kinase domain protein from Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92)
Aligns to 352:469 / 840 (14.0%), covers 87.5% of PF10947, 43.8 bits

• The YARHG domain: an extracellular domain in search of a function.
  Coggill, PloS one 2012
  • “...The remaining two sequences carrying a Pkinase domain are from Gram-positive Firmicutes, see D4L881 and B0MGE2 in Figure 2 . In each of these proteins the Pkinase domain is found at the N-terminus of the protein, with the YARHG domain at the C-terminus separated by a...”

NMB0996 hypothetical protein from Neisseria meningitidis MC58
NMA1204 hypothetical protein NMA1204 from Neisseria meningitidis Z2491
Aligns to 14:96 / 123 (67.5%), covers 83.0% of PF10947, 41.9 bits

• The REP2 repeats of the genome of Neisseria meningitidis are associated with genes coordinately regulated during bacterial cell interaction
  Morelle, Journal of bacteriology 2003
  • “...(NMB0697) NMA0987 (NMB0776) NMA1054 (NMB0844) NMA1204 (NMB0996) NMA1345 (compcNMB1136 and NMB1174) NMA1549 (NMB1335) NMA1708 (NMB1508) NMA1802 (NMB1605) NMA1923...”
• The REP2 repeats of the genome of Neisseria meningitidis are associated with genes coordinately regulated during bacterial cell interaction
  Morelle, Journal of bacteriology 2003
  • “...NMA0902 (NMB0697) NMA0987 (NMB0776) NMA1054 (NMB0844) NMA1204 (NMB0996) NMA1345 (compcNMB1136 and NMB1174) NMA1549 (NMB1335) NMA1708 (NMB1508) NMA1802 (NMB1605)...”
  • “...NMA0601 NMA0609 NMA0812 NMA0820 NMA0902 NMA0987 NMA1054 NMA1204 NMA1345 NMA1549 NMA1708 NMA1802 NMA1923 NMA2210 NMA2225 (crgA) (pilC1) (secD) (amtB) (ksgA)...”

YigF / b3817 DUF2628 domain-containing protein YigF from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P27842 Uncharacterized protein YigF from Escherichia coli (strain K12)
Aligns to 8:119 / 126 (88.9%), covers 88.6% of PF10947, 38.1 bits

• Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine.
  Moessinger, The Journal of biological chemistry 2011

ECH_0207 hypothetical protein from Ehrlichia chaffeensis str. Arkansas
Aligns to 64:153 / 176 (51.1%), covers 89.8% of PF10947, 34.1 bits

• Type 1 secretion system and effectors in Rickettsiales
  Bui, Frontiers in cellular and infection microbiology 2023
  • “...small + hypothetical protein ECH_0607 38 + hypothetical protein ECH_0678 small + + hypothetical protein ECH_0207 small + + hypothetical protein ECH_0673 28 + + hypothetical protein ECH_1128 small + + hypothetical protein ECH_0706 small + hypothetical protein ECH_0635 39 + + hypothetical protein ECH_0988 small...”
• Immunoreactive Protein Repertoires of Ehrlichia chaffeensis and E. canis Reveal the Dominance of Hypothetical Proteins and Conformation-Dependent Antibody Epitopes
  Luo, Infection and immunity 2021 (secret)

Erum7620 putative integral membrane protein from Ehrlichia ruminantium str. Welgevonden
Aligns to 7:93 / 120 (72.5%), covers 88.6% of PF10947, 30.8 bits

• Immune Response to Tick-Borne Hemoparasites: Host Adaptive Immune Response Mechanisms as Potential Targets for Therapies and Vaccines
  Torina, International journal of molecular sciences 2020
  • “...a screening of ten E. ruminantium proteins (Erum0660, Erum1150, Erum2540, Erum5420, Erum7140, Erum7320, Erum7350, Erum7360, Erum7620 and Erum8010) previously identified as immunogenic was carried out to determine their ability to induce cellular immunity in sheep [ 34 ]. The authors identified 23 peptides stimulating different cell-mediated...”
  • “...] Ehrlichia spp. E. ruminantium peptides from Erum0660, Erum1150, Erum2540, Erum5420, Erum7140. Erum7320, Erum7350, Erum7360, Erum7620 and Erum8010 Stimulation of memory CD4 + T cells proliferation and IFN- production in immune sheep Peripheral blood mononuclear cell (PBMCs) [ 34 ] Outer Membrane Proteins (OMPs) - P28...”
• Identification and characterisation of conserved epitopes of E. ruminantium that activate Th1 CD4⁺ T cells: Towards the development of a multi-epitope vaccine
  Thema, Molecular immunology 2019 (PubMed)
  • “...p7320-9, p7320-21), Erum7350 (p7350-9), Erum7360 (p7360-8), Erum7620 (p7620-2, p7620-12) and Erum8010 (p8010-8) were identified that stimulate the best...”
  • “...17.23 Soluble 608 Sebatjane et al., 2010 20 + Erum7620 Integral membrane 120 14.43 Soluble 395 Liebenberg et al., 2012 + Erum7760 Exported lipoprotein...”

RT0308 conserved hypothetical protein from Rickettsia typhi str. wilmington
Aligns to 8:89 / 127 (64.6%), covers 85.2% of PF10947, 28.5 bits

• Genome-wide screen for temperature-regulated genes of the obligate intracellular bacterium, Rickettsia typhi
  Dreher-Lesnick, BMC microbiology 2008
  • “...to 25C. Gene ID Gene annotation Fold Change (exp1, exp2, exp3) Energy production and conversion RT0308 hypothetical protein RT0308 [Rickettsia typhi str. Wilmington] 1.5 (2.2, 1.4, 1.0) RT0346 NADH dehydrogenase alpha subunit [Rickettsia typhi str. Wilmington] 1.6 (1.2, 2.0, 1.8) RT0419* succinyl-CoA synthetase alpha subunit [Rickettsia...”

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