Family Search for PF10948 (DUF2635)

PF10948 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO1241 putative bacteriophage protein from Yersinia pestis CO92
Aligns to 3:48 / 64 (71.9%), covers 97.8% of PF10948, 78.8 bits

• Complete genomic sequence of SfV, a serotype-converting temperate bacteriophage of Shigella flexneri
  Allison, Journal of bacteriology 2002
  • “...(67 aa; E. coli phage Mu) Putative phage protein YPO1241 (64 aa; Yersinia pestis) AF083977 AJ414147 3e-06 (59) 8e-06 (61) 11 751139007 498 53.2 Putative phage...”

GP38_BPMU / P79677 Putative sheath terminator protein; Gene product 38; gp38 from Escherichia phage Mu (Bacteriophage Mu) (see paper)
Aligns to 4:49 / 67 (68.7%), covers 95.7% of PF10948, 77.2 bits

• function: May possibly stop tail sheath polymerization by capping the polymerizing tail sheath once it has reached its requisite length and prevent its depolymerization. Probably interacts with both the tube and sheath proteins.

YP_003335786 DUF2635 domain-containing protein from Escherichia phage D108
Aligns to 5:50 / 68 (67.6%), covers 95.7% of PF10948, 75.8 bits

• A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437
  Pratama, Scientific reports 2017
  • “...63 Mu-like prophage FluMu protein GP38 Hypothetical protein [ Escherichia phage D108] 85 0,000007 43 YP_003335786 82 46808 46209 200 Hypothetical protein Terminase [ Mycobacterium phage DarthPhader] 30 7.4 28 AOZ61253 83 47142 46801 114 Putative phage protein hypothetical protein AcaML1_0040 [ Acidithiobacillus phage AcaML1] 84...”

VF_2640 hypothetical protein from Vibrio fischeri ES114
VF_2640 DUF2635 domain-containing protein from Aliivibrio fischeri ES114
Aligns to 4:49 / 55 (83.6%), covers 95.7% of PF10948, 75.2 bits

• Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions
  Mandel, BMC genomics 2008
  • “...that is present in ES114 and absent in MJ11 (Additional file 4 , new loci VF_2640 through VF_2649), and therefore would not be expected to be called by comparison with MJ11. The coding density of the prophage was markedly increased due to the addition of the...”

HI1510 conserved hypothetical protein from Haemophilus influenzae Rd KW20
P44232 Mu-like prophage FluMu protein gp38 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 6:51 / 63 (73.0%), covers 100.0% of PF10948, 72.0 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...Mu-like prophage protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like prophageFluMu tail tube protein 249 HP HI1513 950379 P44235 Mu-like prophageFluMu protein gp41 250. HP HI1518 950383 P44238...”
• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...469 125 121 200 723 gp38 gpL MuM ORF3 HI1510 HI1511 HI1512 HI1513 NMA1842 NMA1841 NMA1840 gp42 HI1514 NMA1833 (N terminal) NMB1109 NMB1110 NMB1111 NMB1112...”
• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like prophageFluMu tail tube protein 249 HP HI1513 950379 P44235 Mu-like prophageFluMu protein gp41 250. HP HI1518 950383 P44238 Mu-like prophageFluMu...”

Psyr_4596 hypothetical protein from Pseudomonas syringae pv. syringae B728a
Aligns to 7:52 / 62 (74.2%), covers 97.8% of PF10948, 68.9 bits

• Independent Co-Option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas
  Hockett, mBio 2015
  • “...based on protein sequence similarity and gene synteny to phage Mu or SfV (Psyr_4584 to Psyr_4596, Psyr_4601) or IMG gene annotation (Psyr_4582 to Psyr_4583, Psyr_4597 to Psyr_4600, Psyr_4602 to Psyr_4608); b , predicted lysis function; c , predicted regulatory function; d , protein sequence relatedness to...”

Pchl3084_1214 DUF2635 domain-containing protein from Pseudomonas chlororaphis subsp. aureofaciens 30-84
Aligns to 7:52 / 60 (76.7%), covers 91.3% of PF10948, 67.8 bits

• The Phenazine 2-Hydroxy-Phenazine-1-Carboxylic Acid Promotes Extracellular DNA Release and Has Broad Transcriptomic Consequences in Pseudomonas chlororaphis 30-84
  Wang, PloS one 2016
  • “...5.5 Pchl3084_1212 phage protein, late control D family 2.9 5.5 Pchl3084_1213 hypothetical protein 3.0 5.9 Pchl3084_1214 hypothetical protein 3.2 6.4 Pchl3084_1215 putative tail sheath protein 3.2 5.8 Pchl3084_1216 hypothetical protein 3.4 5.3 Pchl3084_1217 hypothetical protein 3.3 5.4 Pchl3084_1218 putative phage tail protein 3.6 5.8 Pchl3084_1219 DNA...”

STMUK_1994 DUF2635 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
Aligns to 3:48 / 54 (85.2%), covers 95.7% of PF10948, 60.1 bits

• Transcriptional Profiling of a Cross-Protective Salmonella enterica serovar Typhimurium UK-1 dam Mutant Identifies a Set of Genes More Transcriptionally Active Compared to Wild-Type, and Stably Transcribed across Biologically Relevant Microenvironments
  Miller, Pathogens (Basel, Switzerland) 2014
  • “...18.23 23.22 NP Putative tail tube protein STMUK_1993 7.41 22.23 80.27 NP Putative bacteriophage protein STMUK_1994 7.28 21.15 69.99 NP Hypothetical bacteriophage protein STMUK_1995 8.96 30.02 76.36 NP Hypothetical bacteriophage protein STMUK_1996 9.84 26.91 150.38 NP Hypothetical bacteriophage protein STMUK_1997 7.64 23.75 98.95 NP Hypothetical bacteriophage...”

A7P61_RS17045 DUF2635 domain-containing protein from Pantoea agglomerans pv. betae
Aligns to 1:32 / 41 (78.0%), covers 56.5% of PF10948, 35.7 bits

• An antibacterial T6SS in Pantoea agglomerans pv. betae delivers a lysozyme-like effector to antagonize competitors
  Carobbi, Environmental microbiology 2022
  • “...A7P61_RS25550 N/A N/A WP_064704466.1 A7P61_RS25545 Unknown Orphan toxin domain WP_197980968.1 A7P61_RS17055 Unknown Immunity protein WP_010246002.1 A7P61_RS17045 Enterocin A Immunity (H) Orphan immunity protein Pseudogene A7P61_RS24950 N/A N/A WP_196766544.1 A7P61_RS25175 Nuclease (H) Orphan toxin domain WP_064704463.1 A7P61_RS17035 RhsI1like (H) Immunity protein WP_064704462.1 A7P61_RS17030 Unknown Orphan immunity protein...”
  • “...via DNA rearrangement to the PAAR encoded at the beginning of the paar island. The A7P61_RS17045 gene encodes another putative orphan immunity protein, as it is identical to a putative immunity protein encoded immediately downstream of a Rhscontaining PAAR protein that is at the same position...”

DVU2715 conserved hypothetical protein from Desulfovibrio vulgaris Hildenborough
Aligns to 3:49 / 61 (77.0%), covers 89.1% of PF10948, 33.0 bits

• Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation
  Elias, Nucleic acids research 2009
  • “...DVU2712 (filled triangle; hypothetical protein), DVU2713 (open square; prophage protein), DVU2714 (open circle; prophage protein), DVU2715 (open diamond; conserved hypothetical) and DVU2716 (open triangle; tail sheath protein). ( B ) Up-regulation of a four-gene operon of DVU0192 (filled diamond; adenine specific DNA methyltransferases) and DVU0194 (filled...”

NMB1103 hypothetical protein from Neisseria meningitidis MC58
Aligns to 6:53 / 65 (73.8%), covers 87.0% of PF10948, 27.6 bits

• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...1117277-1117696 137 353 321 160 140 NMB1102 1117746-1118336 NMB1103 NMB1104 NMB1105 NMB1106 NMB1107 NMB1108 235 80 661 Not annotated C repressor Ner MuA HI1476...”

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