Family Search for PF10953 (DUF2754)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10953 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YaiZ / b0380 DUF2754 domain-containing protein YaiZ from Escherichia coli K-12 substr. MG1655 (see paper)
b0380 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:70 / 70 (100.0%), covers 100.0% of PF10953, 164.6 bits

• Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes
  Skippington, Genome biology and evolution 2012
  • “...rlmD b2785 oxyS 27 Core Incongruent No dps b0812 oxyS 27 Core Incongruent No yaiZ b0380 oxyS 6 Variable Congruent No pqqL b1494 oxyS 17 Variable Incongruent No rcsA b1951 dsrA 26 Variable Incongruent No argR b3237 dsrA 27 Core Incongruent No dsrB b1952 dsrA 27...”
• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...ECs4111 ECs4197 ECs4416 ECs5464 b3292 b3585 b3755 b3179 b0380 b0631 b1445 b1848 b2141 b3238 b3346 b3536 b4537 Translation, ribosomal structure and biogenesis...”

ECs0430 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 45:114 / 114 (61.4%), covers 100.0% of PF10953, 162.6 bits

• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...APPL. ENVIRON. MICROBIOL. ECs4157 ECs4461 ECs4697 ECs4058 ECs0430 ECs0669 ECs2049 ECs2558 ECs3033 ECs4111 ECs4197 ECs4416 ECs5464 b3292 b3585 b3755 b3179 b0380...”

c0486 Hypothetical protein yaiZ from Escherichia coli CFT073
Aligns to 45:114 / 114 (61.4%), covers 100.0% of PF10953, 162.6 bits

• yqhG Contributes to Oxidative Stress Resistance and Virulence of Uropathogenic Escherichia coli and Identification of Other Genes Altering Expression of Type 1 Fimbriae
  Bessaiah, Frontiers in cellular and infection microbiology 2019
  • “...fimB c5391 fimB FimB recombinase regulator for fimA UNKNOWN FUNCTION c0337 Putative conserved protein yaiZ c0486 yaiZ Hypothetical protein c1269 Hypothetical protein c1555 Putative DNA N-6-adenine-methyltransferase of bacteriophage ynjA c2154 ynjA Hypothetical protein yegQ c2611 yegQ Putative protease yegQ yqhG c3747 yqhG Hypothetical protein YqhG precursor...”

ESA_RS13480 DUF2754 family protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 1:70 / 71 (98.6%), covers 100.0% of PF10953, 146.7 bits

• The Global Response of Cronobacter sakazakii Cells to Amino Acid Deficiency
  Chen, Frontiers in microbiology 2018
  • “...Cellulose synthase ESA_RS13320 tsx -5.00 Nucleoside-specific channel-forming protein ESA_RS01515 yjiY -5.16 Carbon starvation protein A ESA_RS13480 yaiZ -5.42 Membrane protein ESA_RS02285 sdaB -5.51 L -serine ammonia-lyase ESA_RS17695 lldP -5.55 L -lactate permease ESA_RS04410 glpQ -5.83 Glycerophosphoryl diester phosphodiesterase ESA_RS04990 mglC -5.98 Galactoside ABC transporter permease ESA_RS04980...”

Or search for genetic data about PF10953 in the Fitness Browser