Family Search for PF10971 (DUF2773)

Running HMMer for PF10971

PF10971 hits 1 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YdbD / b1407 DUF2773 domain-containing protein YdbD from Escherichia coli K-12 substr. MG1655 (see 3 papers)
ydbD / EW|b1407 uncharacterized protein ydbD from Escherichia coli K12 (see paper)
b1407 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P25907 Uncharacterized protein YdbD from Escherichia coli (strain K12)
Aligns to 688:768 / 768 (10.5%), covers 100.0% of PF10971, 154.3 bits

• NtrBC and Nac contribute to efficient Shigella flexneri intracellular replication
  Waddell, Journal of bacteriology 2014
  • “...McbR GntR-type transcriptional regulator Predicted protein Conserved protein b1407 b1418 b1422 b1446 b1447 b1450 b1847 b4217 P value 0.04 6.15E07 0.12 0.0007...”
  • “...Of the remaining genes that are activated by Nac, b1407, b1447, and b1847 are also notable because their expression was upregulated 14-fold, 4-fold, and 13fold,...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...factor 2 (RF-2) -; 4.0; 2.3; 4.3 ymbA Rh b09452 Conserved lipoprotein YmbA 4.2 ydbD b1407 Uncharacterized protein induced by methylglyoxal 3. 9 matA b0294 Putative HTH-type transcriptional regulator 3.8 smpA Re K Rh b2617 Component of Outer Membrane Protein Assembly Complex 3.6 ( 9.4 )...”
• On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer
  Yin, BMC evolutionary biology 2006
  • “...S. aureus strains: Mu50 and COL. Another example of an orthologous ORFan is hypothetical protein b1407 (gi: 16129368) from Escherichia coli strain K12, with U = 0.092 and H = 7. It has highly similar homologs in E. coli O157H7 strain EDL933 and E. coli O157H7,...”
• luxS-dependent gene regulation in Escherichia coli K-12 revealed by genomic expression profiling
  Wang, Journal of bacteriology 2005
  • “...b3945 b0648 b1680 b0823 b1112 b4288 b4310 b3103 b0621 b1407 b0076 b2723 b3683 b3028 b2968 b0579 b3220 b0260 b3046 b2919 b3906 b2060 b0790 b1720 b1010 b2797...”
• Knowns and Unknowns of Vitamin B₆ Metabolism in Escherichia coli
  Tramonti, EcoSal Plus 2021 (secret)

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