Family Search for PF10973 (DUF2799)

Running HMMer for PF10973

PF10973 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VC0688 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 28:109 / 113 (72.6%), covers 98.8% of PF10973, 78.9 bits

• A simple mechanism for integration of quorum sensing and cAMP signalling inV. cholerae
  Walker, 2023
• Transcriptional profiling of Vibrio cholerae recovered directly from patient specimens during early and late stages of human infection
  Larocque, Infection and immunity 2005
  • “...protein protein protein protein Hypothetical protein (conserved): VC0688 Conserved hypothetical protein 0.70 1.8 104 Protein fate: VC2675 Protease HsIVU,...”

VV93_v1c06340 DUF2799 domain-containing protein from Vibrio vulnificus
Aligns to 28:109 / 113 (72.6%), covers 98.8% of PF10973, 77.8 bits

• Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity
  Prithvisagar, The veterinary quarterly 2023
  • “...VV93_v1c30240 0.011091 0.337545 0.5 17 VV93_v1c06430 0.008978 0.291051 0.397059 17 VV93_v1c11600 0.002581 0.303079 0.838235 17 VV93_v1c06340 3.81E-04 0.309859 0.830882 17 3.8. Clustering and modularity within V. vulnificus secretome The global clustering coefficient for the V. vulnificus secretome graph is 0.365. In contrast, a randomly generated network...”

YfiL / b2602 DUF2799 domain-containing lipoprotein YfiL from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b2602 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 32:112 / 121 (66.9%), covers 98.8% of PF10973, 66.7 bits

• In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements
  Maciag, Nucleic acids research 2011
  • “...1.52 yidK Putative membrane transporter b3679 1.53 ynfD Predicted protein b1586 1.54 yfiL Putative lipoprotein b2602 1.55 yi91a Unknown, in CP4-6 prophage sequence b0255 1.56 yfjL Unknown, possible prophage gene b2625 1.57 S ( 9 ) yagL Unknown, prophage protein b0278 1.59 S -Dependent in biofilm-growing...”
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...Rh b3057 Undecaprenyl pyrophosphate phosphatase/peptidoglycan byosynthesis 2.3 yieE yieF b3712-3 Uncharacterized protein 2.3; - yfiL b2602 Putative lipoprotein 2.3 sbmA Re K Rh yaiW Re K Rh b0377-8 Inner membrane transporter 2.2; 1.8 proV proW proX b2677-9 Glycine betaine-binding periplasmic protein -; -; 2.1 rhaA rhaB...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1614 b1783 b1784 b1847 b1999 b2080 b2086 b2602 b2660 b2672 b2665 Putative acyl-CoA dehydrogenase (flavoprotein), adaptive response (transcription activated by...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...ymcC csgG yfiL yghJ yhiU yjbF b0024 b0412 b0682 b0983 b0986 b1037 b2602 b2974 b3513 b4027 5.55 A 20.25 A 15.6 M 25.95 A 15.1 M 2.8 A 10.35 A 26.6 P 19.4 A 27.8...”

ECs3465 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 45:125 / 134 (60.4%), covers 98.8% of PF10973, 66.3 bits

• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...erfK 2.37 2 ECs2820 hisG -2.80 1 ECs3458 yfiO -2.61 1 ECs2821 hisD -2.57 1 ECs3465 yfiL 3.81 2 ECs2822 hisC -2.52 1 ECs3469 rplS -4.28 1 ECs2824 hisH -2.22 1 ECs3470 trmD -5.46 1 ECs2837 wbdQ -2.35 1 ECs3472 rpsP -5.57 1 ECs2888 yegP 4.47...”

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