Family Search for PF11011 (DUF2849)

PF11011 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

RSP_1943 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 8:93 / 101 (85.1%), covers 98.8% of PF11011, 108.9 bits

• The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover
  Grützner, Nucleic acids research 2021
  • “...gene ( catA , RSP_2779, factor 219), the sit genes (ABC Mn transporter), and for RSP_1943 (hypothetical protein) and RSP_1944 (Uroporphyrin-III-methyltransferase / siroheme synthase). Interestingly, many RNAs which were strongly enriched in the CoIP have known or predicted roles in cystein / methionine / sulfur metabolism:...”
• Characteristics of Pos19 - A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides
  Müller, PloS one 2016
  • “...in serine ( serC , serA ) and sulfur metabolism ( cysH , cysI , RSP_1943, cysG/cobA ) showed decreased mRNA levels. Since serine can easily enter cysteine metabolism pathways we carefully re-inspected the microarray data for down-regulated mRNAs (log 2 ratio -0.6) with a function...”
  • “...D-3-phosphoglycerate dehydrogenase RSP_1941 cysH -1.1 Phosphoadenosine phosphosulfate reductase RSP_1942 cysI -1.3 Sulfite/nitrite reductase hemoprotein subunit RSP_1943 -1.4 Sulfite reductase (ferredoxin) RSP_1944 cysG / cobA -1.3 Uroporphiryn-III C-methyltransferase/siroheme synthase RSP_6037 -1.0 Hypothetical protein Up-regulated RSP_0069 fliC 1.6 Flagellar filament protein RSP_2590 1.2 Hypothetical protein RSP_2876 coxM 1.2...”

RL2289 hypothetical protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 4:91 / 104 (84.6%), covers 98.8% of PF11011, 100.9 bits

• The Use of Transposon Insertion Sequencing to Interrogate the Core Functional Genome of the Legume Symbiont Rhizobium leguminosarum
  Perry, Frontiers in microbiology 2016
  • “...protein RL2210 VGI 5 0.2 1 GD 5 0.4 1 NE 0.0.2 Conserved hypothetical protein RL2289 VGI 3 0.33 1 GD 3 1 19 NE 0.0.2 Conserved hypothetical protein RL2291 VGI 7 0.71 2 GD 7 0.86 20 NE 0.0.2 Conserved hypothetical protein RL2527 VGI 13...”

SMc01054 required for sulfate utilization, putative electron source for sulfite reductase CysI from Sinorhizobium meliloti 1021
Aligns to 4:91 / 105 (83.8%), covers 97.7% of PF11011, 97.7 bits

• mutant phenotype: PFam PF11011.4 (DUF2849). conserved cofit with sulfite reductase and has a complementary pattern of gene presence as cysJ

Ga0059261_1497 required for sulfate utilization, putative electron source for sulfite reductase CysI from Sphingomonas koreensis DSMZ 15582
Aligns to 2:83 / 98 (83.7%), covers 100.0% of PF11011, 92.1 bits

• mutant phenotype: PFam PF11011.4 (DUF2849). conserved cofit with sulfite reductase and has a complementary pattern of gene presence as cysJ

BCAN_A0185 hypothetical protein from Brucella canis ATCC 23365
Aligns to 4:91 / 100 (88.0%), covers 96.5% of PF11011, 89.7 bits

• Differential expression of iron acquisition genes by Brucella melitensis and Brucella canis during macrophage infection
  Eskra, PloS one 2012
  • “...phosphoadenosine phosphosulfate reductase cysH NC 45.65 BMEI1766 BCAN_A0186 sulfite reductase ferredoxin) cysI NC 39.80 BMEI1767 BCAN_A0185 hypothetical protein BMEI1767 - NC 56.28 BMEI1768 BCAN_A0184 uroporphyrin-III c-methyltransferase - NC 29.25 BMEI1379 BCAN_A0566 transcriptional regulator betI NC 6.92 BMEI1380 BCAN_A0565 choline dehydrogenase betA 2.07 2.86 BMEII0906 BCAN_B0343 stress-response...”

BMEI1767 hypothetical protein from Brucella melitensis 16M
Aligns to 9:95 / 105 (82.9%), covers 96.5% of PF11011, 89.3 bits

• Differential expression of iron acquisition genes by Brucella melitensis and Brucella canis during macrophage infection
  Eskra, PloS one 2012
  • “...BCAN_A0187 phosphoadenosine phosphosulfate reductase cysH NC 45.65 BMEI1766 BCAN_A0186 sulfite reductase ferredoxin) cysI NC 39.80 BMEI1767 BCAN_A0185 hypothetical protein BMEI1767 - NC 56.28 BMEI1768 BCAN_A0184 uroporphyrin-III c-methyltransferase - NC 29.25 BMEI1379 BCAN_A0566 transcriptional regulator betI NC 6.92 BMEI1380 BCAN_A0565 choline dehydrogenase betA 2.07 2.86 BMEII0906 BCAN_B0343...”

AZOBR_RS10130 required for sulfate utilization, putative electron source for sulfite reductase CysI from Azospirillum brasilense Sp245
Aligns to 2:92 / 99 (91.9%), covers 98.8% of PF11011, 84.3 bits

• mutant phenotype: PFam PF11011.4 (DUF2849). conserved cofit with sulfite reductase and has a complementary pattern of gene presence as cysJ

CCNA_01176 hypothetical protein from Caulobacter crescentus NA1000
Aligns to 2:86 / 119 (71.4%), covers 98.8% of PF11011, 76.4 bits

• Genome-scale fitness profile of Caulobacter crescentus grown in natural freshwater
  Hentchel, The ISME journal 2019
  • “...CCNA_00519 No conserved domains -1.66 -0.37 -0.61 CCNA_01176 DUF2849, pfam11011 -4.98 -0.81 -0.84 CCNA_01178 DUF934, pfam06073, COG3749 -4.36 -0.60 -0.64...”

W6RF17 Sulfite reductase (NADPH) hemoprotein beta-component from Pseudomonas pseudoalcaligenes (strain CECT 5344)
BN5_1900 DUF2849 domain-containing protein from Pseudomonas oleovorans CECT 5344
Aligns to 5:91 / 669 (13.0%), covers 98.8% of PF11011, 58.9 bits

• Proteomic Analysis of Arsenic Resistance during Cyanide Assimilation by Pseudomonas pseudoalcaligenes CECT 5344
  Biełło, International journal of molecular sciences 2023
  • “...52.98 cio gene cluster W6QWX1 BN5_1899 GntR family transcriptional regulator MocR - CN CN - W6RF17 BN5_1900 Sulfite reductase (NADPH) hemoprotein beta-component CysL3 0.75 0.09 17.44 2.05 W6QU90 BN5_1901 Uncharacterized protein CioC3 NAs 0.22 CN 30.15 W6R254 BN5_1902 Terminal oxidase subunit I CioA3 - CN CN...”
• Alternative Pathway for 3-Cyanoalanine Assimilation in Pseudomonas pseudoalcaligenes CECT5344 under Noncyanotrophic Conditions
  Pérez, Microbiology spectrum 2021
  • “...4 + Residue/NH 4 + 3CNA/residue Proteins encoded by the cio gene cluster (cyanide resistance) W6RF17 BN5_1900 Sulfite reductase hemoprotein -component (CysI3) R W6QU90 BN5_1901 Uncharacterized protein (CioC) R R W6R254 BN5_1902 Terminal oxidase subunit I (CioA) R R W6QWX6 BN5_1904 Phosphoserine aminotransferase (SerC) R R...”
• Proteomic Analysis of Arsenic Resistance during Cyanide Assimilation by Pseudomonas pseudoalcaligenes CECT 5344
  Biełło, International journal of molecular sciences 2023
  • “...cio gene cluster W6QWX1 BN5_1899 GntR family transcriptional regulator MocR - CN CN - W6RF17 BN5_1900 Sulfite reductase (NADPH) hemoprotein beta-component CysL3 0.75 0.09 17.44 2.05 W6QU90 BN5_1901 Uncharacterized protein CioC3 NAs 0.22 CN 30.15 W6R254 BN5_1902 Terminal oxidase subunit I CioA3 - CN CN -...”
• Alternative Pathway for 3-Cyanoalanine Assimilation in Pseudomonas pseudoalcaligenes CECT5344 under Noncyanotrophic Conditions
  Pérez, Microbiology spectrum 2021
  • “...+ Residue/NH 4 + 3CNA/residue Proteins encoded by the cio gene cluster (cyanide resistance) W6RF17 BN5_1900 Sulfite reductase hemoprotein -component (CysI3) R W6QU90 BN5_1901 Uncharacterized protein (CioC) R R W6R254 BN5_1902 Terminal oxidase subunit I (CioA) R R W6QWX6 BN5_1904 Phosphoserine aminotransferase (SerC) R R W6RF21...”
• Putative small RNAs controlling detoxification of industrial cyanide-containing wastewaters by Pseudomonas pseudoalcaligenes CECT5344
  Olaya-Abril, PloS one 2019
  • “...protein; BN5_1897, thiol-disulfide isomerase and thioredoxins protein; BN5_1898, 2-dehydro-3-deoxyphosphogluconate/4-hydroxy-2-oxoglutarate aldolase; BN5_1899, GntR family transcriptional regulator; BN5_1900, sulfite reductase-NADPH hemoprotein -component; BN5_1901, uncharacterized protein; BN5_1902, terminal oxidase subunit I CioA; BN5_1903, cytochrome d ubiquinol oxidase, subunit II CioB; BN5_1904, phosphoserine/phosphohydroxythreonine aminotransferase; BN5_1905, histidinol phosphate/imidazole acetol phosphate transaminase;...”
  • “...683 BN5_1637 0.7 0.09 525 48 750 649 BN5_1642 10.5 0.7 27.7 0.1 2.6 184 BN5_1900 5.7 0.4 5059 89 887 649 BN5_1903 5.5 0.3 1877 162 341 649 BN5_1909 1.7 0.1 206.1 18 153 258 BN5_2264 9.6 1.9 186.7 13 19.4 649 BN5_2265 1.2 0.05...”

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