Family Search for PF11016 (DUF2854)

PF11016 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Y575_SYNY3 / Q55403 Thylakoid membrane protein slr0575 from Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) (see paper)
slr0575 unknown protein from Synechocystis sp. PCC 6803
Aligns to 21:166 / 184 (79.3%), covers 99.3% of PF11016, 220.1 bits

• The biogenesis and maintenance of PSII: Recent advances and current challenges
  Komenda, The Plant cell 2024
  • “...2016 ). Other proteins that co-purify at low levels with D2 mod include 2 proteins, Slr0575 and Slr1470, with homologues in chloroplasts ( Knoppov et al. 2022 ). While the function of Slr1470 remains to be determined, Slr0575 has a stabilizing effect on D2 in Synechocystis...”
• Assembly of D1/D2 complexes of photosystem II: Binding of pigments and a network of auxiliary proteins
  Knoppová, Plant physiology 2022
  • “...the assembly factors rubredoxin A and Ycf48, but we also detected PsbN, Slr1470, and the Slr0575 proteins, which all have plant homologs. The RCII preparations also contained prohibitins/stomatins (Phbs) of unknown function and FtsH protease subunits. RCII complexes were active in light-induced primary charge separation and...”
  • “...(see Supplemental Table S1 ); nonspecifically interacting proteins are designated with an asterisk. PsbN and Slr0575 were identified using specific antibodies. About 0.5g of Chl was loaded onto the gel. Figure 2 Photochemical activity of RCII complexes. The light-induced accumulation of P680 + (A) and Pheo...”
• Proximity Labeling Facilitates Defining the Proteome Neighborhood of Photosystem II Oxygen Evolution Complex in a Model Cyanobacterium
  Xiao, Molecular & cellular proteomics : MCP 2022
  • “...Second, proteins involved in PS II assembly, maturation, and damage-degradation-repair cycle. These include HliD, YidC, Slr0575, FtsH2, FtsH3, and Psb32. HliD is a small one-TM containing membrane protein belonging to the high-lightinduced protein family and was found to be associated with RCII complex and is involved...”
  • “...( 47 ) and is essential for thylakoid biogenesis ( 48 ). The hypothetical protein Slr0575 is also involved in PS II assembly. Slr0575 locates primarily on the thylakoid membrane ( 11 ) and was identified as a subunit of the PS II assembly intermediate RCII...”
• Advances in the Understanding of the Lifecycle of Photosystem II
  Johnson, Microorganisms 2022
  • “...strain of S6803 lacking CP47 that contains PsbN as well as the protein products of slr0575 and slr1470 [ 21 ]. This complex is on the de novo synthesis pathway, as active PSII does not form in this strain. However, a pre-D2 complex was also isolated...”
• Proximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002
  Dahlgren, Photosynthesis research 2021
  • “...permease component slr1045 Inner membrane (4) A2400 One 2.65 Thylakoid membrane protein of unknown function slr0575 Thylakoid membrane (2, 4, 5, 6, 10, 15) A1418;A0157;A2164 psbA; psbAII; psbA Both 2.65 PSII core sll1867; slr1311 Thylakoid membrane (1, 2, 3, 5, 6, 8, 10, 21, 24), Inner...”
• Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism
  Baers, Plant physiology 2019
  • “...62 uncharacterized TM localized proteins in Synechocystis , 10 (slr1747, sll0862, sll0875, sll1071, sll1399, sll1925, slr0575, slr1591, slr1821, slr1919) have homologs in Chlamydomonas reinhardtii and Arabidopsis, suggesting a conserved role throughout the photosynthetic lineage (highlighted in red in Supplemental Table S10 ). In contrast, the Arabidopsis...”
• Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions
  Kopf, The ISME journal 2015
  • “...125) None Slr1322 (0.0) Slr0483 (e 38) Slr1035 (e 12) Slr0575 (e 78) Sll0749 (e 38) Slr1096 (0.0) Sll0195 (e 117) Slr0164 (e 99) Slr0228HL (e 58) Sll1483HL (e...”
• Proteomic analysis reveals resistance mechanism against biofuel hexane in Synechocystis sp. PCC 6803
  Liu, Biotechnology for biofuels 2012
  • “...Sll1774, Sll1783, Sll1873, Sll1911, Slr0006, Slr0013, Slr0038, Slr0111, Slr0318, Slr0333, Slr0420, Slr0455, Slr0476, Slr0503, Slr0565, Slr0575, Slr0601, Slr0613, Slr0680, Slr0729, Slr0848, Slr0867, Slr0923, Slr0924, Slr0955, Slr1236, Slr1266, Slr1273, Slr1417, Slr1438, Slr1472, Slr1557, Slr1623, Slr1649, Slr1690, Slr1732, Slr1846, Slr1847, Slr2101, Ssl0242, Ssl0352, Ssl0467, Ssl0832, Ssl1690, Ssl1707, Ssl1972,...”

NP_001190435 acclimation of photosynthesis to environment from Arabidopsis thaliana
Aligns to 110:261 / 431 (35.3%), covers 99.3% of PF11016, 158.9 bits

• [Silencing Effect of APE1 on the Radiosensitivity of Non-small Cell Lung Cancer Cells].
  Ou, Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition 2019 (PubMed)
  • GeneRIF: expression of APE1 was upregulated in non-small cell lung cancer tissues and cell lines

Q2HIR7 Acclimation of photosynthesis to environment from Arabidopsis thaliana
AT5G38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) from Arabidopsis thaliana
Aligns to 110:261 / 286 (53.1%), covers 99.3% of PF11016, 158.1 bits

• Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness
  Wang, PloS one 2016
  • “...AT1G13280 S 1.470.07 Stress and Defense (2) 52 Acclimation of photosynthesis to environment protein (APE1) Q2HIR7 AT5G38660 T 1.520.10 53 Resistance to phytophthora 1 protein (RPH1) F4IN59 AT2G48070 Chl 1.640.04 Unknown (2) 54 Uncharacterized protein F4IYD5 AT3G01060 Chl 1.480.15 55 Uncharacterized protein Q9SGU7 AT1G64680 Chl 2.250.21...”
• The chromatin remodeler ERCC6 and the histone chaperone NAP1 are involved in apurinic/apyrimidinic endonuclease-mediated DNA repair
  Fan, The Plant cell 2024
  • “...and functional terms are of significance to the work described in this paper: APE1 Gramene: AT5G38660 APE1 Araport: AT5G38660 OGG1 Gramene: AT1G21710 OGG1 Araport: AT1G21710 ARP Gramene: AT2G41460 ARP Araport: AT2G41460 NAP1;2 Gramene: AT2G19480 NAP1;2 Araport: AT2G19480 NAP1;1 Gramene: AT4G26110 NAP1;1 Araport: AT4G26110 NAP1;3 Gramene: AT5G56950...”
• The biogenesis and maintenance of PSII: Recent advances and current challenges
  Komenda, The Plant cell 2024
  • “...paper: OHP2 Gramene: AT1G34000 OHP2 Araport: AT1G34000 ALB3 Gramene: AT2G28800 ALB3 Araport: AT2G28800 APE1 Gramene: AT5G38660 APE1 Araport: AT5G38660 HCF136 Gramene: AT5G23120 HCF136 Araport: AT5G23120 PLP1 Gramene: AT4G37070 PLP1 Araport: AT4G37070 Psb28 Gramene: Sll1398 Psb28 Araport: Sll1398 References Adir N , Shochat S , Ohad I...”
• Comparative transcriptomics reveals the role of altered energy metabolism in the establishment of single-cell C₄ photosynthesis in Bienertia sinuspersici
  Han, Frontiers in plant science 2023
  • “...transporter ( NITR2;1 ; AT5G62720), and Acclimation of photosynthesis to environment 1 ( APE1 ; AT5G38660), which were upregulated at the mature stage only in SCC 4 species ( Figure3A ). According to previous studies, NITR2;1 plays a role in the nitrogen assimilation pathway ( Maeda...”
• Arabidopsis fibrillin 1-2 subfamily members exert their functions via specific protein-protein interactions
  Torres-Romero, Journal of experimental botany 2022
  • “...b At4g38970 Fructose bisphosphate aldolase 2 Yes b At5g42650 Allene oxide synthase (AOS) Yes b At5g38660 Acclimation of photosynthesis to environment (APE1) No At4g19170 9- cis -epoxycarotenoid dioxygenase 4 (CCD4) Yes a At1g20020 Ferredoxin-NADP[H]-oxidoreductase 2 (FNR2) No At3g18890 NAD(P)-binding Rossmann-fold superfamily protein (Tic62) No At3g26840 Diacylglycerol...”
• Assembly of D1/D2 complexes of photosystem II: Binding of pigments and a network of auxiliary proteins
  Knoppová, Plant physiology 2022
  • “...). The Arabidopsis ( Arabidopsis thaliana ) homolog of Slr0575 is APE1 (corresponding gene is At5g38660 ), which has been detected in the Arabidopsis complex equivalent to RCII*, consisting of One Helix Protein 1 (OHP1) and OHP2 (plant homologs of Hlips), D1, D2, High Chl Fluorescence...”
• COG database update: focus on microbial diversity, model organisms, and widespread pathogens
  Galperin, Nucleic acids research 2021
  • “...Acclimation of photosynthesis to environment protein APE1 (At5g38660 in A. thaliana). This analysis also confirmed the previous report that Gloeobacter...”
• Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis
  Krahmer, FEBS letters 2019
  • “...DUF1118 2 0.00031 0.0030 7.6 n n.d. AT3G11910 UBP13 7 2.76E04 0.0028 6.9 Y n.d. AT5G38660 APE1 3 5.27E04 0.0044 6.5 n 2/0 AT3G60750 ; AT2G45290 Transketolase 9 0.0060 0.023 6.5 n n.d. AT5G56030 ; AT5G52640 ; AT5G56000 HSP90.2; HSP90.1; HSP90.4 5 2.8E05 6.8E04 6.4 n...”
• Unravelling Protein-Protein Interaction Networks Linked to Aliphatic and Indole Glucosinolate Biosynthetic Pathways in Arabidopsis
  Nintemann, Frontiers in plant science 2017
  • “...6 1 4 11 At5G19550 Aspartate aminotransferase 2 (ASP2) 44.3 Cytoplasm 1 0 5 6 At5G38660 Acclimation of photosynthesis to environment (APE1) 31.4 1 Plastid 8 0 1 9 At5G42650 Allene oxide synthase (AOS) 58.2 Plastid 6 0 15 21 At5G44130 FASCICLIN-like arabinogalactan protein 13 precursor...”
  • “...protein-fragment complementation assay (Jones et al., 2014 ), and Acclimation of Photosynthesis to Environment (APE1, At5G38660), found in our screens as an interactor of CYP83B1 in yeast 2-hybrid and as an interactor of CYP83A1 in Co-IP (Figure S4 ). Due to the complementary nature of the...”
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Q8H0W8 Uncharacterized protein At5g38660 from Arabidopsis thaliana
Aligns to 110:261 / 286 (53.1%), covers 99.3% of PF11016, 158.1 bits

• Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station
  Mazars, PloS one 2014
  • “...2.3716 Uncharacterized protein At4g01150, chloroplastic O23601 1.8203 Putative uncharacterized protein AT4g17600 (Putative uncharacterized protein dl4835w) Q8H0W8 1.9158 Putative uncharacterized protein At5g38660 Q8VYV1 2.3485 AT5g08050/F13G24_250 (At5g08050/F13G24_250) Q93VA8 AT1G76010 1.7247 Alba DNA/RNA-binding protein (At1g76010/T4O12_22) Q93W02 AT5G24690 1.9446 AT5g24690/MXC17_8 (Putative uncharacterized protein At5g24690) (Putative uncharacterized protein At5g24700) (Uncharacterized protein)...”

B8BA11 Uncharacterized protein from Oryza sativa subsp. indica
Aligns to 104:270 / 286 (58.4%), covers 99.3% of PF11016, 155.6 bits

• Glutathione S-transferase activity facilitates rice tolerance to the barnyard grass root exudate DIMBOA
  Zhang, BMC plant biology 2024
  • “...12 Q10QZ4 Elongation factor 1-alpha 34.07572383 10 19 Q0JKY8 Carbonic anhydrase (Fragment) 41.63701068 10 24 B8BA11 Uncharacterized protein 33.56643357 9 11 A0A0E0IVE3 Uncharacterized protein 10.76023392 9 25 A0A0E0HK09 Uncharacterized protein 20.63227953 9 10 P46265 Tubulin beta-5 chain 25.05592841 9 11 A0A0E0ITA5 Tubulin beta chain 25.16853933 9...”

B7G7J9 Thylakoid membrane protein from Phaeodactylum tricornutum (strain CCAP 1055/1)
Aligns to 106:256 / 300 (50.3%), covers 97.9% of PF11016, 148.7 bits

• Loss of CpFTSY Reduces Photosynthetic Performance and Affects Insertion of PsaC of PSI in Diatoms
  Nymark, Plant & cell physiology 2023
  • “...18.6 B7FWZ2 FeS assembly-like protein FeS cluster biosynthesis 1.36 2.36 Cp N 7 7 26.4 B7G7J9 APE1-homolog Photoacclimation 1.16 1.58 TM N 5 5 52.5 B5Y3Z3 ABC1K6 Stress responses 0.71 1.16 PG N 7 7 19.5 B7FY63 ABC1K7/8-like protein Stress responses 1.27 1.55 PG N 1...”

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