Family Search for PF11101 (DUF2884)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF11101 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
VV93_v1c22970 YggN family protein from Vibrio vulnificus
Aligns to 21:245 / 247 (91.1%), covers 100.0% of PF11101, 231.4 bits
- Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity
Prithvisagar, The veterinary quarterly 2023 - “...surA 0.038047 0.321306 0.237154 23 VV93_v1c05840 0.010784 0.330973 0.604743 23 VV93_v1c00830 0.007517 0.335727 0.675889 23 VV93_v1c22970 0.007349 0.328936 0.687747 23 VV93_v1c10670 0.007108 0.337545 0.494071 23 VV93_v1c22490 0.006563 0.335125 0.506494 22 luxP 0.016389 0.327209 0.657143 21 VV93_v1c32790 0.005421 0.33156 0.6 21 VV93_v1c33530 0.047597 0.348555 0.126316 20 VV93_v1c33510...”
- “...uncharacterized, with only few associated with cyclic-di-gmp binding (VV93_v1c00420, VV93_v1c08230, VV93_v1c09620, VV93_v1c13620, VV93_v1c14430, VV93_v1c15230, VV93_v1c21290, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740, VV93_v1c41410), sporulation-like domain, and lipoate-protein ligase activity (VV93_v1c00420, VV93_v1c08230, VV93_v1c13620, VV93_v1c15230, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740), AsmA, and leucine-rich repeat domain superfamily (VV93_v1c08230, VV93_v1c34010, VV93_v1c37740), thiamine kinase, and...”
IC627_05670 YggN family protein from Photobacterium damselae subsp. piscicida
Aligns to 21:245 / 247 (91.1%), covers 100.0% of PF11101, 226.8 bits
- Transforming the untransformable with knockout minicircles: High-efficiency transformation and vector-free allelic exchange knockout in the fish pathogen Photobacterium damselae
Rudenko, MicrobiologyOpen 2023 - “...family transcriptional regulator IC627_05655 Cation transporter IC627_05660 NYN domaincontaining protein IC627_05665 CG2 omega domain protein IC627_05670 YggN family protein IC627_05675 Hypothetical protein IC627_05680 Phospholipase A IC627_05685 YgiQ family radical SAM protein IC627_05690 IS1like element ISPda1 family transposase IC627_05695 YgiQ family radical SAM protein IC627_05700 AAA family...”
- “...family transcriptional regulator IC627_05655 Cation transporter IC627_05660 NYN domaincontaining protein IC627_05665 CG2 omega domain protein IC627_05670 YggN family protein IC627_05675 Hypothetical protein IC627_05680 phospholipase A IC627_05685 YgiQ family radical SAM protein IC627_05690 IS1like element ISPda1 family transposase IC627_05695 YgiQ family radical SAM protein IC627_05700 AAA family...”
EcfF / b2958 DUF2884 domain-containing protein YggN from Escherichia coli K-12 substr. MG1655 (see paper)
c3544 Hypothetical protein yggN from Escherichia coli CFT073
P0ADS9 Uncharacterized protein YggN from Escherichia coli (strain K12)
b2958 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 74.9 bits
YPK_0824 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 29:244 / 244 (88.5%), covers 95.2% of PF11101, 73.0 bits
- Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
Mahmud, mSystems 2020 - “...9.99 54,28,32 YPK_0746 YPK_0745 175, 132 IrGS8 940388 4.1 NA 3.4 TTGGCATTGTTGATGCTC + 10.1 24,28,54,38 YPK_0824 YPK_0825 26, 26, 64 IrGS9 1141660 6.5 4.2 3.4 TTGGTATGATTTATGCCT + 10.6 54,70,38,32,24 YPK_1016 YPK_1018 35, 36, 76, 78 IrGS10 1225391 3.3 NA NA TTGGCTGAAAACTTGCAG + 9.88 54,24 YPK_1084 YPK_1085...”
YPTB3220 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 37:251 / 252 (85.3%), covers 94.7% of PF11101, 73.0 bits
STM3107 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 69.9 bits
- Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium
Gruzdev, Applied and environmental microbiology 2012 - “...ycjX (STM1685) sixA (STM2387) iscA (STM2541) yggN (STM3107) exbB (STM3159) pckA (STM3500) slsA (STM3761) aceK (STM4185) phoH (STM1126) minE (STM1816) yahO...”
- L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence
Kullas, Cell host & microbe 2012 - “...TCR-, we generated strains with targeted deletions of STM3104 , STM3105 , STM3106 , or STM3107 . Only STM3106 S . Typhimurium were unable to downmodulate TCR- ( Figure 2C ). The presence of STM3106 in trans complemented the phenotype of STM3106 S . Typhimurium (...”
- “...T cells left UI or cultured with WT, STM3104 , STM3105 , STM3106 , or STM3107 S . Typhimurium; p < 0.0001. (D and E) Expression of surface TCR- by CD25 + T cells left UI (gray in histograms) or cultured with WT S . Typhimurium,...”
SG3001 hypothetical protein from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 69.8 bits
- Black soldier fly (Hermetia illucens) larvae enhances immune activities and increases survivability of broiler chicks against experimental infection of Salmonella Gallinarum
Lee, The Journal of veterinary medical science 2018 - “...problem in Korean poultry industry [ 15 ], was determined in this study. Salmonella Gallinarum (SG3001) used in the present study was originally isolated from a chick with naturally occurring fowl typhoid (National Veterinary Research & Quarantine Service). All chicks (n=20 in each group) were acclimatized...”
- “...bacteriological culture of fecal samples obtained by cloacal swabs [ 10 ]. S . Gallinarum (SG3001) was prepared as described previously [ 25 ]. Each chick was orally challenged with 5 10 10 cfu, the optimal dose determined in our previous study [ 8 , 10...”
- Guanosine 5'-monophosphate-chelated calcium and iron feed additives maintains egg production and prevents Salmonella Gallinarum in experimentally infected layers
Noh, Journal of veterinary science 2017 - “...Salmonella Gallinarum. The experiment was conducted in triplicate. Preparation of Salmonella Gallinarum (inoculum) Salmonella Gallinarum (SG3001) for experimental inoculation was provided by the Animal and Plant Quarantine Agency (Korea). The SG3001 was cultured on MacConkey agar plates overnight. One colony was selected and inoculated in Brain...”
- Immunoprophylactic effects of administering honeybee (Apis melifera) venom spray against Salmonella gallinarum in broiler chicks
Jung, The Journal of veterinary medical science 2013 - “...rooms by group. In this experiment, 1 10 9 cfu/m l formalin-killed S . Gallinarum (SG3001) was used as the antigen. All chicks received two subcutaneous injections (0.3 m l each time) with a 1-week interval between injections. The first inoculation was given with Freunds complete...”
- “...isolated group were orally inoculated with 1 10 9 cfu (sublethal dose) S . Gallinarum (SG3001). Five infected chicks from each isolated group were randomly sacrificed for analysis of the immune response and bacterial clearance against a sublethal dose of S . Gallinarum at 3, 7,...”
- Salmonella enterica serovar gallinarum requires ppGpp for internalization and survival in animal cells
Jeong, Journal of bacteriology 2008 - “...1. Salmonella strains used in this study Description SG3001 SG3003 SG3004 SG3005 SG3015 SG3016 SG3017 SG3018 SG3021 SG3022 SG3023 SG3024 SG3025 Sch2005 SMR2063...”
- “...Wild-type isolate SG3001 spoT::cat relA::kan SG3001 hilA::kan SG3001 ssrAB::Kan SG3001 putA::hilAp::lacZY::Amp SG3003 putA::hilAp::lacZY::Amp SG3001...”
XAC1544 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 23:113 / 168 (54.2%), covers 36.4% of PF11101, 63.4 bits
XC_2740 hypothetical protein from Xanthomonas campestris pv. campestris str. 8004
Aligns to 31:121 / 177 (51.4%), covers 36.0% of PF11101, 57.7 bits
Or search for genetic data about PF11101 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory