Family Search for PF11101 (DUF2884)

Running HMMer for PF11101

PF11101 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VV93_v1c22970 YggN family protein from Vibrio vulnificus
Aligns to 21:245 / 247 (91.1%), covers 100.0% of PF11101, 231.4 bits

• Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity
  Prithvisagar, The veterinary quarterly 2023
  • “...surA 0.038047 0.321306 0.237154 23 VV93_v1c05840 0.010784 0.330973 0.604743 23 VV93_v1c00830 0.007517 0.335727 0.675889 23 VV93_v1c22970 0.007349 0.328936 0.687747 23 VV93_v1c10670 0.007108 0.337545 0.494071 23 VV93_v1c22490 0.006563 0.335125 0.506494 22 luxP 0.016389 0.327209 0.657143 21 VV93_v1c32790 0.005421 0.33156 0.6 21 VV93_v1c33530 0.047597 0.348555 0.126316 20 VV93_v1c33510...”
  • “...uncharacterized, with only few associated with cyclic-di-gmp binding (VV93_v1c00420, VV93_v1c08230, VV93_v1c09620, VV93_v1c13620, VV93_v1c14430, VV93_v1c15230, VV93_v1c21290, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740, VV93_v1c41410), sporulation-like domain, and lipoate-protein ligase activity (VV93_v1c00420, VV93_v1c08230, VV93_v1c13620, VV93_v1c15230, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740), AsmA, and leucine-rich repeat domain superfamily (VV93_v1c08230, VV93_v1c34010, VV93_v1c37740), thiamine kinase, and...”

EcfF / b2958 DUF2884 domain-containing protein YggN from Escherichia coli K-12 substr. MG1655 (see paper)
b2958 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P0ADS9 Uncharacterized protein YggN from Escherichia coli (strain K12)
c3544 Hypothetical protein yggN from Escherichia coli CFT073
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 74.9 bits

• Whole-genome sequencing analysis of two heat-evolved Escherichia coli strains
  McGuire, BMC genomics 2023
  • “...adhesin-like autotransporter YpjA FS 112/1526 umpG b2744 broad specificity 5'(3')-nucleotidase and polyphosphatase FS 33/253 yggN b2958 putative EcfF FS 195/239 mtr b3161 tryptophan:H(+) symporter Mtr FS 335/414 glpR # b3423 DNA-binding transcriptional repressor GlpR FS 51/105 pitA b3493 metal phosphate:H(+) symporter PitA T 385/499 gadW b3515...”
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...acid elongation 7.4; 3,7; 1.7; 5.8; 2.2; 1.4; 1.7 ; -; - yggN D Rh b2958 Uncharacterized protein, potentially involved in biofilm formation. 6.9 htrG D K Rh cca K Rh b3055-56 HtrG: Uncharacterized inner membrane protein; Cca: tRNA nucleotidyltransferase 2.1; 6.3 kdsC lptC(yrbK) lptA Rh...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...Protein function and expressione Reference(s) P0ADE8 P0ADS9 P67080 P0A8P3 Protein Hypothetical protein Hypothetical UPF0001 protein Probable Fe2-trafficking...”
• Role of sigma E-regulated genes in Escherichia coli uropathogenesis
  Redford, Infection and immunity 2006
  • “...2267 3170 c1313 c0066 c3989 c3904 c3473 c2289 c3718 c3805 c3544 c4121 c4608 c0457-9 c0197 c0197 c0215 mdoG surA degQ yraP dsbC cutC ytfJ ygiM yggN fkpA yidQ...”

YPK_0824 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 29:244 / 244 (88.5%), covers 95.2% of PF11101, 73.0 bits

• Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
  Mahmud, mSystems 2020
  • “...9.99 54,28,32 YPK_0746 YPK_0745 175, 132 IrGS8 940388 4.1 NA 3.4 TTGGCATTGTTGATGCTC + 10.1 24,28,54,38 YPK_0824 YPK_0825 26, 26, 64 IrGS9 1141660 6.5 4.2 3.4 TTGGTATGATTTATGCCT + 10.6 54,70,38,32,24 YPK_1016 YPK_1018 35, 36, 76, 78 IrGS10 1225391 3.3 NA NA TTGGCTGAAAACTTGCAG + 9.88 54,24 YPK_1084 YPK_1085...”

YPTB3220 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 37:251 / 252 (85.3%), covers 94.7% of PF11101, 73.0 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...0.675 (0.027) YPTB3177 YPO0901 putative exported protein 1.442 (0.019) YPTB3179 YPO0904 hypothetical protein 1.708 (0.002) YPTB3220 YPO0948 conserved hypothetical protein 1.56 (0.021) YPTB3256 (insA) or3105 insertion element protein 1.939 (< 0.001) YPTB3257 YPO0983 putative lipoprotein 2.06 (0.001) YPTB3280 or3088 Hypothetical 0.606 (0.009) YPTB3305 YPO1002 hypothetical protein...”

STM3107 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 69.9 bits

• Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium
  Gruzdev, Applied and environmental microbiology 2012
  • “...ycjX (STM1685) sixA (STM2387) iscA (STM2541) yggN (STM3107) exbB (STM3159) pckA (STM3500) slsA (STM3761) aceK (STM4185) phoH (STM1126) minE (STM1816) yahO...”
• L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence
  Kullas, Cell host & microbe 2012
  • “...TCR-, we generated strains with targeted deletions of STM3104 , STM3105 , STM3106 , or STM3107 . Only STM3106 S . Typhimurium were unable to downmodulate TCR- ( Figure 2C ). The presence of STM3106 in trans complemented the phenotype of STM3106 S . Typhimurium (...”
  • “...T cells left UI or cultured with WT, STM3104 , STM3105 , STM3106 , or STM3107 S . Typhimurium; p < 0.0001. (D and E) Expression of surface TCR- by CD25 + T cells left UI (gray in histograms) or cultured with WT S . Typhimurium,...”

SG3001 hypothetical protein from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Aligns to 24:239 / 239 (90.4%), covers 94.3% of PF11101, 69.8 bits

• Black soldier fly (Hermetia illucens) larvae enhances immune activities and increases survivability of broiler chicks against experimental infection of Salmonella Gallinarum
  Lee, The Journal of veterinary medical science 2018
  • “...problem in Korean poultry industry [ 15 ], was determined in this study. Salmonella Gallinarum (SG3001) used in the present study was originally isolated from a chick with naturally occurring fowl typhoid (National Veterinary Research & Quarantine Service). All chicks (n=20 in each group) were acclimatized...”
  • “...bacteriological culture of fecal samples obtained by cloacal swabs [ 10 ]. S . Gallinarum (SG3001) was prepared as described previously [ 25 ]. Each chick was orally challenged with 5 10 10 cfu, the optimal dose determined in our previous study [ 8 , 10...”
• Guanosine 5'-monophosphate-chelated calcium and iron feed additives maintains egg production and prevents Salmonella Gallinarum in experimentally infected layers
  Noh, Journal of veterinary science 2017
  • “...Salmonella Gallinarum. The experiment was conducted in triplicate. Preparation of Salmonella Gallinarum (inoculum) Salmonella Gallinarum (SG3001) for experimental inoculation was provided by the Animal and Plant Quarantine Agency (Korea). The SG3001 was cultured on MacConkey agar plates overnight. One colony was selected and inoculated in Brain...”
• Immunoprophylactic effects of administering honeybee (Apis melifera) venom spray against Salmonella gallinarum in broiler chicks
  Jung, The Journal of veterinary medical science 2013
  • “...rooms by group. In this experiment, 1 10 9 cfu/m l formalin-killed S . Gallinarum (SG3001) was used as the antigen. All chicks received two subcutaneous injections (0.3 m l each time) with a 1-week interval between injections. The first inoculation was given with Freunds complete...”
  • “...isolated group were orally inoculated with 1 10 9 cfu (sublethal dose) S . Gallinarum (SG3001). Five infected chicks from each isolated group were randomly sacrificed for analysis of the immune response and bacterial clearance against a sublethal dose of S . Gallinarum at 3, 7,...”
• Salmonella enterica serovar gallinarum requires ppGpp for internalization and survival in animal cells
  Jeong, Journal of bacteriology 2008
  • “...1. Salmonella strains used in this study Description SG3001 SG3003 SG3004 SG3005 SG3015 SG3016 SG3017 SG3018 SG3021 SG3022 SG3023 SG3024 SG3025 Sch2005 SMR2063...”
  • “...Wild-type isolate SG3001 spoT::cat relA::kan SG3001 hilA::kan SG3001 ssrAB::Kan SG3001 putA::hilAp::lacZY::Amp SG3003 putA::hilAp::lacZY::Amp SG3001...”

XAC1544 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 23:113 / 168 (54.2%), covers 36.4% of PF11101, 63.4 bits

• Deciphering the regulon of a GntR family regulator via transcriptome and ChIP-exo analyses and its contribution to virulence in Xanthomonas citri
  Zhou, Molecular plant pathology 2017
  • “...regulated-operon 1) (including ytrA, nodI, XAC1546, XAC1545, XAC1544 and XAC1543), yro2 (including czcB, XAC2065 and XAC2066) and yro3 (including XAC0231 and...”

XC_2740 hypothetical protein from Xanthomonas campestris pv. campestris str. 8004
Aligns to 31:121 / 177 (51.4%), covers 36.0% of PF11101, 57.7 bits

• Competitive control of endoglucanase gene engXCA expression in the plant pathogen Xanthomonas campestris by the global transcriptional regulators HpaR1 and Clp
  Liu, Molecular plant pathology 2019
  • “...proteins XC_0657 ( XCC3504 ) Hypothetical protein 2.79 XC_1710 ( XCC2402 ) Hypothetical protein 3.22 XC_2740 ( XCC1469 ) Hypothetical protein 13.84 Note False discovery rate (FDR)=0.05 and absolute value of log 2 of the fold change (log 2 FC)=1 (equivalent to a fold change of...”

Or search for genetic data about PF11101 in the Fitness Browser