Family Search for PF11254 (DUF3053)

PF11254 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YiaF / b3554 DUF3053 domain-containing protein YiaF from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P0ADK0 Uncharacterized protein YiaF from Escherichia coli (strain K12)
b3554 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 14:232 / 236 (92.8%), covers 99.1% of PF11254, 326.4 bits

• Quantitative Shotgun Proteomic Analysis of Bacteria after Overexpression of Recombinant Spider Miniature Spidroin, MaSp1
  Randene, International journal of molecular sciences 2024
  • “...of our best candidates identified in our proteomic analysis represent uncharacterized bacterial proteins (accession numbers P0ADK0, P0ADA5, P0AD33, and P77376), which will require further investigation to elucidate their specific roles in spidroin expression ( Table 3 ). Other identified candidates with elevated protein levels are curious,...”
  • “...racemase, catabolic P29012 5.79 10 3 +OLR Isomerizes L- to D-alanine yiaF Uncharacterized protein YiaF P0ADK0 1.60 10 3 +OLR Uncharacterized panB 3-methyl-2-oxobutanoate hydroxymethyltransferase P31057 1.60 10 3 +OLR Pantothenate biosynthesis yajG Uncharacterized lipoprotein YajG P0ADA5 5.79 10 3 +OLR Uncharacterized N/A MaSp1 NT4XCT N/A 1.00...”
• Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli
  Baars, Journal of bacteriology 2008
  • “...23 24 25 26 27 ompX cirA yiaF fhuA btuB P0A917 P17315 P0ADK0 P06971 P06129 28 29 30 32 tolC nlpA mipA pal P02930 P04846 P0A908 P0A912 33 fepA P05825 34 35 36...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...YhhF YhiU P0ADX9 YhjG YiaF YibO P37645 P0ADK0 YidA P0A8Y5 Phosphatase 5.11/29,721.14 YieL P31471 Protein 5.23/63,739.36 YifE YifL YigL YihK P0ADN2...”
• Sxy induces a CRP-S regulon in Escherichia coli
  Sinha, Journal of bacteriology 2009
  • “...78 79 79 b3863 b0294 b3334 b0245 b4326 b1562 b0235 b0325 b3554 b4327 b0032 b2821 b2819 polA matA gspM ykfI yjiD hokD ykfJ yahK yiaF yjiE carA ptrA recD 4.18...”
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...b Product(s) description/function Fold change(s) c yebE Y b1846 Conserved inner membrane protein 9.8 yiaF b3554 Putative inner membrane lipoprotein 5.9 ( 7.71 ) yhaH yhaI yhaJ b3103-5 Predicted inner membrane protein; putative inner membrane protein; predicted DNA binding transcriptional regulator 1.9; 3.2 ( 40.3 );...”

c4373 Hypothetical protein yiaF from Escherichia coli CFT073
Z4979 No description from Escherichia coli O157:H7 EDL933
Aligns to 54:272 / 276 (79.3%), covers 99.1% of PF11254, 325.6 bits

• P-113D, an antimicrobial peptide active against Pseudomonas aeruginosa, retains activity in the presence of sputum from cystic fibrosis patients
  Sajjan, Antimicrobial agents and chemotherapy 2001
  • “...R3001 R3004 441513 cep0533 cep0455 cep0509 cep0055 c5424 c6061 c4373 c6424 FC441 cep0055s 61AT 72AT 81BG 85BG 100BG 47BH 59BH 17BI 22BI 44BI 46BJ 77BJ 8AU 32AU...”
• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...L (IM or OM) OM 3322 45* VSGC 21 T 2* conserved putative lipoprotein YiaF Z4979 yiaF 30157 L (IM or OM) unkn 3297 157 LSGC 26 F 2 predicted metallopeptidase YggG Z4280 yggG 31826 L (IM or OM) unkn 2523 326 LTGC 19 Q seq,...”

STM3647 putative outer membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 14:232 / 236 (92.8%), covers 99.5% of PF11254, 320.9 bits

• Immunity to intracellular Salmonella depends on surface-associated antigens
  Barat, PLoS pathogens 2012
  • “...873 399 0.024 87 27 0.126 76 45 0.043 52 29 0.011 4 0.938 T3872 STM3647 yiaF Inner Membrane 829 354 n.d. n.d. n.d. n.d. 0 0.880 T1508 STM1599 pcgL Periplasm 14605 2135 503 235 0.077 75 22 0.006 63 66 0.110 1212 940 <0.001 3...”

YPTB3917 putative exported protein from Yersinia pseudotuberculosis IP 32953
Aligns to 19:237 / 241 (90.9%), covers 99.5% of PF11254, 319.4 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPTB3893 YPO4040 putative exported protein 0.487 (< 0.001) YPTB3908 YPO4081 putative membrane protein 1.408 (0.01) YPTB3917 (yiaF) YPO4070 putative exported protein 1.554 (0.016) 0.701 (0.047) YPTB3922 YPO4064 hypothetical protein 1.409 (0.046) YPTB3923 YPO4063 putative membrane protein 1.53 (0.041) YPTB3944 or2545 hypothetical protein_ 0.593 (0.016) O: posttranslational...”

YPO4070 putative exported protein from Yersinia pestis CO92
Aligns to 19:237 / 241 (90.9%), covers 99.5% of PF11254, 316.6 bits

• Cell membrane is impaired, accompanied by enhanced type III secretion system expression in Yersinia pestis deficient in RovA regulator
  Yang, PloS one 2010
  • “...putative exported protein 3.C.1 Cell envelop YPO2670 4.12 ureG urease accessory protein 3.C.1 Cell envelop YPO4070 3.16 yiaF putative exported protein 3.C.1 Cell envelop YPO2943 2.78 ----- outer membrane usher protein (pseudogene) 3.C.3 Cell envelop YPO2339 2.08 mppA putative periplasmic murein peptide-binding protein 4.A Transport/binding proteins...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...putative exported protein 0.487 (< 0.001) YPTB3908 YPO4081 putative membrane protein 1.408 (0.01) YPTB3917 (yiaF) YPO4070 putative exported protein 1.554 (0.016) 0.701 (0.047) YPTB3922 YPO4064 hypothetical protein 1.409 (0.046) YPTB3923 YPO4063 putative membrane protein 1.53 (0.041) YPTB3944 or2545 hypothetical protein_ 0.593 (0.016) O: posttranslational modification, protein...”

PSPTO_2769 lipoprotein, putative from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 8:227 / 233 (94.4%), covers 98.2% of PF11254, 273.3 bits

• Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality
  McMillan, Applied and environmental microbiology 2023 (secret)
• AlgU Controls Expression of Virulence Genes in Pseudomonas syringae pv. tomato DC3000
  Markel, Journal of bacteriology 2016
  • “...Type III chaperone protein PSPTO_2697 PSPTO_2734 PSPTO_2769 PSPTO_3087 PSPTO_3157 PSPTO_3296 PSPTO_3490 PSPTO_3500 PSPTO_3527 PSPTO_3692 FIG 4 Intersection of...”

PSPPH_2654 lipoprotein, putative from Pseudomonas syringae pv. phaseolicola 1448A
Aligns to 8:227 / 233 (94.4%), covers 98.6% of PF11254, 266.3 bits

• Transcriptional profile of P. syringae pv. phaseolicola NPS3121 at low temperature: physiology of phytopathogenic bacteria
  Arvizu-Gómez, BMC microbiology 2013
  • “...PSPPH_2260 UTP-glucose-1-phosphate uridylyltransferase 1.72 PSPPH_2542 membrane protein, putative 1.94 PSPPH_2643 outer membrane efflux protein 1.68 PSPPH_2654 lipoprotein, putative 1.55 PSPPH_2842 lipoprotein, putative 1.55 PSPPH_3226 glycosyl transferase, group 1 family protein 1.72 PSPPH_3288 predicted periplasmic lipoprotein 2.05 PSPPH_3810 lipoprotein 1.71 PSPPH_3916 membrane protein, putative 1.86 PSPPH_4139 UDP-N-acetylglucosamine...”
  • “...the cell wall [ 34 , 35 ]. In our analyses four genes (PSPPH_ 1464, PSPPH_2654, PSPPH_2842, and PSPPH_3810) encoding lipoproteins were induced, which may be related to outer membrane synthesis. The microarray results suggest that membrane component synthesis is activated in the conditions of our...”
• Transcriptional profile of Pseudomonas syringae pv. phaseolicola NPS3121 in response to tissue extracts from a susceptible Phaseolus vulgaris L. cultivar
  Hernández-Morales, BMC microbiology 2009
  • “...protein 2.0 PSPPH_2652 ABC transporter, ATP-binding protein 8.7 PSPPH_2653 lipopolysaccharide core biosynthesis domain protein 10.5 PSPPH_2654 lipoprotein, putative 6.4 The table comprises all the genes that shown 2.0 fold change in expression level. L Bean leaf extract, A apoplastic fluid and P Bean pod extract. ORF...”

STM1188 putative inner membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 12:241 / 247 (93.1%), covers 99.5% of PF11254, 248.8 bits

• Salmonella serovar identification using PCR-based detection of gene presence and absence
  Arrach, Journal of clinical microbiology 2008
  • “...STM1002, STM1031, STM1055, STM1088, STM1096, STM1130, STM1188, STM1240, STM1284, STM1285, STM1352, STM1360, STM1380, STM1381, STM1525, STM1533, STM1537,...”

SC1135 putative inner membrane lipoprotein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 18:247 / 253 (90.9%), covers 99.5% of PF11254, 247.6 bits

• A new class of Caulobacter crescentus flagellar genes
  Leclerc, Journal of bacteriology 1998
  • “...SC1032 SC1055 SC1066 SC1117 SC1127 SC1128 SC1132 SC1134 SC1135 SC2663 SC3090 SC3809 SC3898 SC3899 SC3971 SC3973 SC3975 SC4016 SC4250 Wild type syn-1000 bla-6...”
  • “...SC1029 SC1032 SC1055 SC1066 SC1132 SC2663 SC3809 SC1117 SC1134 SC1135 SC1128 flhB (II) flbD (II) rpoN (II) fliL (II) flhA (II) fliM (II) flaS (II) flgH (III)...”
• Physical mapping and complementation analysis of transposon Tn5 mutations in Caulobacter crescentus: organization of transcriptional units in the hook gene cluster
  Ohta, Journal of bacteriology 1984
  • “...SC1052 SC1054 SC1060 SC1061 SC1062 SC1114 SC1132 SC1134 SC1135 SC1166 SC1582 SC1585 SC1721 PC5001 PC5005 PC5007 PCM103 Genotype TRANSCRIPTIONAL UNITS IN C....”
  • “...1, CB15; lane 2, SC1132 (fla-608::TnS); lane 3, SC1135 (fla602::TnS); lane 4, SC1062 (flaE178::TnS, unlinked to hook gene cluster, [23]); lane 5, SC1054...”

BP2886 putative lipoprotein from Bordetella pertussis Tohama I
Aligns to 23:240 / 250 (87.2%), covers 99.1% of PF11254, 246.3 bits

• Identification of BvgA-Dependent and BvgA-Independent Small RNAs (sRNAs) in Bordetella pertussis Using the Prokaryotic sRNA Prediction Toolkit ANNOgesic
  Moon, Microbiology spectrum 2021
  • “...Bvg(+) S10 25 298 < BP3409 < BP3410 < Bvg(+) Bvg(+) S11 26 242 < BP2886 BP2887 > > Bvg(+) Bvg(+) S12 28 17 ubiE > BP0162 > > Independent Bvg()/Bvg(+) S13 30 239 panB > BP2851 > < Bvg() S14 34 95 BP1164 > BP1165...”

SEN1861 putative inner membrane lipoprotein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 12:241 / 247 (93.1%), covers 99.5% of PF11254, 245.6 bits

• Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen
  Clavijo, Applied and environmental microbiology 2006
  • “...ES17 ES31 ES33 ES37 ES41 ES50 SEN1188 yigQ SEN1861 STM3980 SEN0784 SEN1204 Putative Putative Putative Putative Putative Putative Metabolism ES3 ES5 ES7 ES12...”

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