Family Search for PF11258 (DUF3048)

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PF11258 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YERB_BACSU / O34968 Putative lipoprotein YerB from Bacillus subtilis (strain 168) (see paper)
Aligns to 37:179 / 331 (43.2%), covers 100.0% of PF11258, 181.4 bits

• subunit: Interacts with PcrA. The interaction is not essential for cell viability or repair of UV-induced lesions.
  disruption phenotype: No PcrA-related phenotype.

CPR_2517 hypothetical protein from Clostridium perfringens SM101
Aligns to 68:210 / 355 (40.3%), covers 98.6% of PF11258, 162.5 bits

• Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and Germination Characteristics
  Xiao, PloS one 2015
  • “...COGs) CPR_1859 ( ytxC ), CPR_0147 (CD1511), CPR_1448 (CD3032), CPR_2589 (CD3613) CPR_1348 ( ydfR/ydfS ), CPR_2517( yerB ), CPR_1333 ( yhbH ), CPR_1731 ( ymxH ), CPR_1929 ( yunB ), CPR_1626 ( yuzA ), CPR2663 ( yyaC ), CPR2565 ( yyaD/ykvI ), CPR_0309 (CD0546), CPR_1322 (CD1594),...”

BH0638 hypothetical protein from Bacillus halodurans C-125
Aligns to 51:192 / 352 (40.3%), covers 99.3% of PF11258, 157.3 bits

• Periplasmic flagellar export apparatus protein, FliH, is involved in post-transcriptional regulation of FlaB, motility and virulence of the relapsing fever spirochete Borrelia hermsii
  Guyard, PloS one 2013
  • “...In addition to the large deletion in BH0289, a codon insertion (ATT) was detected in BH0638 at the position 683830 bp of the reference chromosome of B. hermsii DAH (NC_010673). This mutation resulted in the insertion of a tyrosine codon at position 1283 bp of the...”

RUMGNA_02392 hypothetical protein from Ruminococcus gnavus ATCC 29149
Aligns to 62:211 / 367 (40.9%), covers 98.6% of PF11258, 145.6 bits

• Capsular polysaccharide correlates with immune response to the human gut microbe Ruminococcus gnavus
  Henke, Proceedings of the National Academy of Sciences of the United States of America 2021
  • “...B as cps + ). Genes are numbered following ATCC 29149 locus convention (RUMGNA_02411 through RUMGNA_02392). Strain ATCC 35913 has a defective capsular polysaccharide biosynthesis gene cluster ( cps + * ) and does not appear encapsulated. Fig. 2. Phylogenetic tree based on genomic BLAST of...”

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