Family Search for PF11367 (DUF3168)

PF11367 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CCNA_02871 gene transfer agent (GTA)-related protein from Caulobacter crescentus NA1000
Aligns to 112:228 / 235 (49.8%), covers 99.1% of PF11367, 96.8 bits

• Correction of the Caulobacter crescentus NA1000 genome annotation
  Ely, PloS one 2014
  • “...non caulobacter CCNA_02536 26840422684413 Conserved hypothetical protein Caulobacter CCNA_02585 27336982734024 Conserved hypothetical protein non caulobacter CCNA_02871 3021200..3021598c Gene transfer agent (GTA)-like protein Caulobacter CCNA_02880 3027016..3028377c Phage DNA packaging protein Caulobacter CCNA_02968 31252413125573c Conserved hypothetical protein non caulobacter CCNA_02990 31441263144536 Transposase non caulobacter CCNA_02998 31531243153330 Conserved hypothetical...”
  • “...the complementary strand of the DNA. In three of the 38 cases described above, CCNA_02393, CCNA_02871, and CCNA_02968, we also identified a second open reading frame where there was a clear high third codon position GC peak that did not correspond to a previously annotated gene...”

RCAP_rcc01690 DUF3168 domain-containing protein from Rhodobacter capsulatus SB 1003
Aligns to 12:129 / 135 (87.4%), covers 98.3% of PF11367, 95.9 bits

• The gene transfer agent-like particle of the marine phototrophic bacterium Rhodovulum sulfidophilum
  Nagao, Biochemistry and biophysics reports 2015
  • “...RCAP_rcc01687 TY12_RS09190 71.7 0 6 RCAP_rcc01688 TY12_RS09195 54.0 1.00E66 7 RCAP_rcc01689 TY12_RS09200 54.0 5.00E35 8 RCAP_rcc01690 TY12_RS09205 60.5 4.00E45 9 RCAP_rcc01691 TY12_RS09210 73.7 7.00E78 10 RCAP_rcc01692 TY12_RS09215 64.1 4.00E29 10.5 RCAP_rcc01693 TY12_RS09220 63.3 3.00E24 11 RCAP_rcc01694 TY12_RS09225 59.3 3.00E82 12 RCAP_rcc01695 TY12_RS09230 69.1 2.00E109 13 RCAP_rcc01696...”

TM1040_1064 hypothetical protein from Silicibacter TM1040
Aligns to 12:128 / 135 (86.7%), covers 98.3% of PF11367, 88.8 bits

• Phylogenomics and signature proteins for the alpha proteobacteria and its main groups
  Gupta, BMC microbiology 2007
  • “...YP_612747 Lipoprotein, putative TM1040_2582 3 YP_614576 Hypothetical TM1040_1063 YP_613058 Gene transfer agent TM1040_2999 YP_614993 Hypothetical TM1040_1064 YP_613059 Gene transfer agent TM1040_3077 3 YP_611313 Hypothetical TM1040_1247 3 YP_613242 Hypothetical TM1040_3749 YP_611978 Hypothetical TM1040_1350 2 YP_613345 Hypothetical TM1040_3759 YP_611988 Lipoprotein, putative TM1040_1406 YP_613401 Outer membrane chaperone Skp (OmpH)...”

BR0593 hypothetical protein from Brucella suis 1330
Aligns to 11:128 / 135 (87.4%), covers 90.6% of PF11367, 84.9 bits

• Molecular targets for rapid identification of Brucella spp
  Ratushna, BMC microbiology 2006
  • “...hypothetical protein 1 BR0592 584345 .. 584512 BruAb1_0613 605848 .. 606381 168/534 hypothetical protein 1 BR0593 584472 .. 584879 BruAb1_0613 605848 .. 606381 408/534 conserved hypothetical protein 1 BR0952 (924995 .. 925828) 834 amino acid ABC transporter, permease protein 1 BR0953 (925831..926553) 723 amino acid ABC...”

BruAb1_0613 hypothetical protein from Brucella abortus biovar 1 str. 9-941
Aligns to 53:170 / 177 (66.7%), covers 89.7% of PF11367, 83.8 bits

• Molecular targets for rapid identification of Brucella spp
  Ratushna, BMC microbiology 2006
  • “..... 584348 BruAb1_0612 605513 .. 605851 339 conserved hypothetical protein 1 BR0592 584345 .. 584512 BruAb1_0613 605848 .. 606381 168/534 hypothetical protein 1 BR0593 584472 .. 584879 BruAb1_0613 605848 .. 606381 408/534 conserved hypothetical protein 1 BR0952 (924995 .. 925828) 834 amino acid ABC transporter, permease...”
  • “...+ 59 BR0591/BruAb1_0612 conserved hypothetical protein 139 + - - - + - 60 BR0592 BruAb1_0613 hypothetical protein 91 + - - - + - 61 BR0593/BruAb1_0613 conserved hypothetical protein 208 + + - - + - 62 BR1852/BruAb1_1831 transcriptional regulator, Cro/CI family, 194 + -...”

YP_003714740 tail terminator from Streptomyces phage phiSASD1
Aligns to 22:141 / 145 (82.8%), covers 95.7% of PF11367, 77.9 bits

• Isolation, characterization, and complete genome analysis of P1312, a thermostable bacteriophage that infects Thermobifida fusca
  Cheepudom, Frontiers in microbiology 2015
  • “...36 015 7720 8157 16.2 (V) Phage tail protein WP_026128262 84/130 Nocardiopsis lucentensis (65) gp33 YP_003714740 44/124 phiSASD1 phage (35) 016 8512 8703 7.1 (V) Phage tail protein WP_017602209 45/62 Nocardiopsis lucentensis (73) gp34 YP_003714741 19/53 phiSASD1 phage (36) 017 8703 9098 14.3 (M) Hypothetical protein...”

PP1572 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 4:118 / 122 (94.3%), covers 96.6% of PF11367, 74.6 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

RSP_6012 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 4:120 / 126 (92.9%), covers 100.0% of PF11367, 74.6 bits

• Evolutionary constraints and expression analysis of gene duplications in Rhodobacter sphaeroides 2.4.1
  Peters, BMC research notes 2012
  • “...0.0377 0.7706 0.9452 RSP_2482 RSP_4189 Receptor PC/PD 294 6 0.0270 0.5608 0.0481 0.9162 0.9250 RSP_2064 RSP_6012 Hypothetical CI/CI 126 11 0.0485 0.9247 0.0525 N/A N/A RSP_4252 RSP_3907 Hypothetical PD/PA 163 2 0.0050 0.0757 0.0658 N/A N/A RSP_1653 RSP_6190 Hypothetical CI/CII 208 18 0.0821 1.0949 0.0750 N/A...”

RSP_2064 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 4:120 / 126 (92.9%), covers 100.0% of PF11367, 71.5 bits

• Evolutionary constraints and expression analysis of gene duplications in Rhodobacter sphaeroides 2.4.1
  Peters, BMC research notes 2012
  • “...0.8434 0.0377 0.7706 0.9452 RSP_2482 RSP_4189 Receptor PC/PD 294 6 0.0270 0.5608 0.0481 0.9162 0.9250 RSP_2064 RSP_6012 Hypothetical CI/CI 126 11 0.0485 0.9247 0.0525 N/A N/A RSP_4252 RSP_3907 Hypothetical PD/PA 163 2 0.0050 0.0757 0.0658 N/A N/A RSP_1653 RSP_6190 Hypothetical CI/CII 208 18 0.0821 1.0949 0.0750...”

SO_2957 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 5:118 / 122 (93.4%), covers 84.6% of PF11367, 69.3 bits

• Electrochemical selection and characterization of a high current-generating Shewanella oneidensis mutant with altered cell-surface morphology and biofilm-related gene expression
  Kouzuma, BMC microbiology 2014
  • “...phage minor tail protein G -1.62 SO_2956 Prophage LambdaSo, major tail protein V, putative -1.60 SO_2957 Lambda phage protein of unknown function -1.35 SO_2965 Prophage LambdaSo, HK97 family portal protein Function unknown -1.24 SO_2968 Phage terminase small subunit Replication, recombination and repair -1.03 SO_2969 Prophage LambdaSo,...”

COMPL_BPSPP / O48448 Tail completion protein gp17; Gene product 17; gp17; Head-tail joining protein gp17; Tail-to-head joining protein from Bacillus phage SPP1 (Bacteriophage SPP1) (see 3 papers)
Aligns to 13:127 / 134 (85.8%), covers 89.7% of PF11367, 55.4 bits

• function: Tail completion protein that caps the tail and interacts with the connector gp16, thereby attaching the tail to the capsid.
  subunit: Homohexamer (PubMed:22072538, PubMed:25991862). Interacts with gp16 connector protein (PubMed:22072538, PubMed:25991862).
• Dual function of a highly conserved bacteriophage tail completion protein essential for bacteriophage infectivity.
  Auzat, Communications biology 2024
  • “...Joining Protein (THJP) gp17 gpU TrP p142 T5.146 ORF41 gp11 gpR gpK Mup37 Uniprot entry O48448 P03732 Q6QGE1 Q77K20 Q9MCS8 P36933 Q9T1V8 Length (aa) 134 131 161 129 115 155 182 MS mass spectrometry, WB western blot, Tap tail activator protein, TTP tail tube protein, TrP...”

WP_017647849 DUF3168 domain-containing protein from Streptococcus agalactiae STIR-CD-14
Aligns to 15:123 / 128 (85.2%), covers 83.8% of PF11367, 32.5 bits

• Comprehensive Characterization of a Streptococcus agalactiae Phage Isolated from a Tilapia Farm in Selangor, Malaysia, and Its Potential for Phage Therapy
  Megat, Pharmaceuticals (Basel, Switzerland) 2023
  • “...agalactiae ] 161/161 (100%) 161 Phage major tail protein TP901-1 (IPR011855) Major Tail 8 11,16311,549 WP_017647849 DUF3168 domain-containing protein [ S. agalactiae ] 128/128 (100%) 128 Tail completion protein (IPR021508) Tail protein 9 11,54611,929 WP_000609260 HK97 gp10 family phage protein [ S. agalactiae ] 104/126 (83%)...”

A1S_1594 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 2:79 / 99 (78.8%), covers 53.0% of PF11367, 32.3 bits

• Prophage induction and differential RecA and UmuDAb transcriptome regulation in the DNA damage responses of Acinetobacter baumannii and Acinetobacter baylyi
  Hare, PloS one 2014
  • “...A1S_2039 Phage nucleotide binding protein recA 7.1 A1S_1586 esvK1 Ethanol-stimulated virulence protein ** recA 7.1 A1S_1594 Hypothetical protein recA 7.1 A1S_1164 Putative phage tail tape measure protein recA 7.0 A1S_3620 Hypothetical protein recA 7.0 A1S_3755 Holin recA 7.0 A1S_1151 Hypothetical protein recA 6.7 A1S_1165 Putative phage...”

Q9MCS8 Gp11 from Enterobacteria phage HK97
Aligns to 6:111 / 115 (92.2%), covers 63.2% of PF11367, 31.7 bits

• Dual function of a highly conserved bacteriophage tail completion protein essential for bacteriophage infectivity.
  Auzat, Communications biology 2024
  • “...gpU TrP p142 T5.146 ORF41 gp11 gpR gpK Mup37 Uniprot entry O48448 P03732 Q6QGE1 Q77K20 Q9MCS8 P36933 Q9T1V8 Length (aa) 134 131 161 129 115 155 182 MS mass spectrometry, WB western blot, Tap tail activator protein, TTP tail tube protein, TrP terminator protein. Discussion A...”

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