Family Search for PF11367 (DUF3168)

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PF11367 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CCNA_02871 gene transfer agent (GTA)-related protein from Caulobacter crescentus NA1000
Aligns to 112:228 / 235 (49.8%), covers 99.1% of PF11367, 96.8 bits

• Correction of the Caulobacter crescentus NA1000 genome annotation
  Ely, PloS one 2014
  • “...non caulobacter CCNA_02536 26840422684413 Conserved hypothetical protein Caulobacter CCNA_02585 27336982734024 Conserved hypothetical protein non caulobacter CCNA_02871 3021200..3021598c Gene transfer agent (GTA)-like protein Caulobacter CCNA_02880 3027016..3028377c Phage DNA packaging protein Caulobacter CCNA_02968 31252413125573c Conserved hypothetical protein non caulobacter CCNA_02990 31441263144536 Transposase non caulobacter CCNA_02998 31531243153330 Conserved hypothetical...”
  • “...the complementary strand of the DNA. In three of the 38 cases described above, CCNA_02393, CCNA_02871, and CCNA_02968, we also identified a second open reading frame where there was a clear high third codon position GC peak that did not correspond to a previously annotated gene...”

RCAP_rcc01690 DUF3168 domain-containing protein from Rhodobacter capsulatus SB 1003
Aligns to 12:129 / 135 (87.4%), covers 98.3% of PF11367, 95.9 bits

• The gene transfer agent-like particle of the marine phototrophic bacterium Rhodovulum sulfidophilum
  Nagao, Biochemistry and biophysics reports 2015
  • “...RCAP_rcc01687 TY12_RS09190 71.7 0 6 RCAP_rcc01688 TY12_RS09195 54.0 1.00E66 7 RCAP_rcc01689 TY12_RS09200 54.0 5.00E35 8 RCAP_rcc01690 TY12_RS09205 60.5 4.00E45 9 RCAP_rcc01691 TY12_RS09210 73.7 7.00E78 10 RCAP_rcc01692 TY12_RS09215 64.1 4.00E29 10.5 RCAP_rcc01693 TY12_RS09220 63.3 3.00E24 11 RCAP_rcc01694 TY12_RS09225 59.3 3.00E82 12 RCAP_rcc01695 TY12_RS09230 69.1 2.00E109 13 RCAP_rcc01696...”

TM1040_1064 hypothetical protein from Silicibacter TM1040
Aligns to 12:128 / 135 (86.7%), covers 98.3% of PF11367, 88.8 bits

• Phylogenomics and signature proteins for the alpha proteobacteria and its main groups
  Gupta, BMC microbiology 2007
  • “...YP_612747 Lipoprotein, putative TM1040_2582 3 YP_614576 Hypothetical TM1040_1063 YP_613058 Gene transfer agent TM1040_2999 YP_614993 Hypothetical TM1040_1064 YP_613059 Gene transfer agent TM1040_3077 3 YP_611313 Hypothetical TM1040_1247 3 YP_613242 Hypothetical TM1040_3749 YP_611978 Hypothetical TM1040_1350 2 YP_613345 Hypothetical TM1040_3759 YP_611988 Lipoprotein, putative TM1040_1406 YP_613401 Outer membrane chaperone Skp (OmpH)...”

BR0593 hypothetical protein from Brucella suis 1330
Aligns to 11:128 / 135 (87.4%), covers 90.6% of PF11367, 84.9 bits

• Molecular targets for rapid identification of Brucella spp
  Ratushna, BMC microbiology 2006
  • “...hypothetical protein 1 BR0592 584345 .. 584512 BruAb1_0613 605848 .. 606381 168/534 hypothetical protein 1 BR0593 584472 .. 584879 BruAb1_0613 605848 .. 606381 408/534 conserved hypothetical protein 1 BR0952 (924995 .. 925828) 834 amino acid ABC transporter, permease protein 1 BR0953 (925831..926553) 723 amino acid ABC...”

BruAb1_0613 hypothetical protein from Brucella abortus biovar 1 str. 9-941
Aligns to 53:170 / 177 (66.7%), covers 89.7% of PF11367, 83.8 bits

• Molecular targets for rapid identification of Brucella spp
  Ratushna, BMC microbiology 2006
  • “..... 584348 BruAb1_0612 605513 .. 605851 339 conserved hypothetical protein 1 BR0592 584345 .. 584512 BruAb1_0613 605848 .. 606381 168/534 hypothetical protein 1 BR0593 584472 .. 584879 BruAb1_0613 605848 .. 606381 408/534 conserved hypothetical protein 1 BR0952 (924995 .. 925828) 834 amino acid ABC transporter, permease...”
  • “...+ 59 BR0591/BruAb1_0612 conserved hypothetical protein 139 + - - - + - 60 BR0592 BruAb1_0613 hypothetical protein 91 + - - - + - 61 BR0593/BruAb1_0613 conserved hypothetical protein 208 + + - - + - 62 BR1852/BruAb1_1831 transcriptional regulator, Cro/CI family, 194 + -...”

YP_003714740 tail terminator from Streptomyces phage phiSASD1
Aligns to 22:141 / 145 (82.8%), covers 95.7% of PF11367, 77.9 bits

• Isolation, characterization, and complete genome analysis of P1312, a thermostable bacteriophage that infects Thermobifida fusca
  Cheepudom, Frontiers in microbiology 2015
  • “...36 015 7720 8157 16.2 (V) Phage tail protein WP_026128262 84/130 Nocardiopsis lucentensis (65) gp33 YP_003714740 44/124 phiSASD1 phage (35) 016 8512 8703 7.1 (V) Phage tail protein WP_017602209 45/62 Nocardiopsis lucentensis (73) gp34 YP_003714741 19/53 phiSASD1 phage (36) 017 8703 9098 14.3 (M) Hypothetical protein...”

PP1572 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 4:118 / 122 (94.3%), covers 96.6% of PF11367, 74.6 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

RSP_6012 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 4:120 / 126 (92.9%), covers 100.0% of PF11367, 74.6 bits

• Evolutionary constraints and expression analysis of gene duplications in Rhodobacter sphaeroides 2.4.1
  Peters, BMC research notes 2012
  • “...0.0377 0.7706 0.9452 RSP_2482 RSP_4189 Receptor PC/PD 294 6 0.0270 0.5608 0.0481 0.9162 0.9250 RSP_2064 RSP_6012 Hypothetical CI/CI 126 11 0.0485 0.9247 0.0525 N/A N/A RSP_4252 RSP_3907 Hypothetical PD/PA 163 2 0.0050 0.0757 0.0658 N/A N/A RSP_1653 RSP_6190 Hypothetical CI/CII 208 18 0.0821 1.0949 0.0750 N/A...”

RSP_2064 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 4:120 / 126 (92.9%), covers 100.0% of PF11367, 71.5 bits

• Evolutionary constraints and expression analysis of gene duplications in Rhodobacter sphaeroides 2.4.1
  Peters, BMC research notes 2012
  • “...0.8434 0.0377 0.7706 0.9452 RSP_2482 RSP_4189 Receptor PC/PD 294 6 0.0270 0.5608 0.0481 0.9162 0.9250 RSP_2064 RSP_6012 Hypothetical CI/CI 126 11 0.0485 0.9247 0.0525 N/A N/A RSP_4252 RSP_3907 Hypothetical PD/PA 163 2 0.0050 0.0757 0.0658 N/A N/A RSP_1653 RSP_6190 Hypothetical CI/CII 208 18 0.0821 1.0949 0.0750...”

SO_2957 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 5:118 / 122 (93.4%), covers 84.6% of PF11367, 69.3 bits

• Electrochemical selection and characterization of a high current-generating Shewanella oneidensis mutant with altered cell-surface morphology and biofilm-related gene expression
  Kouzuma, BMC microbiology 2014
  • “...phage minor tail protein G -1.62 SO_2956 Prophage LambdaSo, major tail protein V, putative -1.60 SO_2957 Lambda phage protein of unknown function -1.35 SO_2965 Prophage LambdaSo, HK97 family portal protein Function unknown -1.24 SO_2968 Phage terminase small subunit Replication, recombination and repair -1.03 SO_2969 Prophage LambdaSo,...”

COMPL_BPSPP / O48448 Tail completion protein gp17; Gene product 17; gp17; Head-tail joining protein gp17; Tail-to-head joining protein from Bacillus phage SPP1 (Bacteriophage SPP1) (see 3 papers)
Aligns to 13:127 / 134 (85.8%), covers 89.7% of PF11367, 55.4 bits

• function: Tail completion protein that caps the tail and interacts with the connector gp16, thereby attaching the tail to the capsid.
  subunit: Homohexamer (PubMed:25991862, PubMed:22072538). Interacts with gp16 connector protein (PubMed:22072538, PubMed:25991862).

WP_017647849 DUF3168 domain-containing protein from Streptococcus agalactiae
Aligns to 15:123 / 128 (85.2%), covers 83.8% of PF11367, 32.5 bits

• Comprehensive Characterization of a Streptococcus agalactiae Phage Isolated from a Tilapia Farm in Selangor, Malaysia, and Its Potential for Phage Therapy
  Megat, Pharmaceuticals (Basel, Switzerland) 2023
  • “...agalactiae ] 161/161 (100%) 161 Phage major tail protein TP901-1 (IPR011855) Major Tail 8 11,16311,549 WP_017647849 DUF3168 domain-containing protein [ S. agalactiae ] 128/128 (100%) 128 Tail completion protein (IPR021508) Tail protein 9 11,54611,929 WP_000609260 HK97 gp10 family phage protein [ S. agalactiae ] 104/126 (83%)...”

A1S_1594 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 2:79 / 99 (78.8%), covers 53.0% of PF11367, 32.3 bits

• Prophage induction and differential RecA and UmuDAb transcriptome regulation in the DNA damage responses of Acinetobacter baumannii and Acinetobacter baylyi
  Hare, PloS one 2014
  • “...A1S_2039 Phage nucleotide binding protein recA 7.1 A1S_1586 esvK1 Ethanol-stimulated virulence protein ** recA 7.1 A1S_1594 Hypothetical protein recA 7.1 A1S_1164 Putative phage tail tape measure protein recA 7.0 A1S_3620 Hypothetical protein recA 7.0 A1S_3755 Holin recA 7.0 A1S_1151 Hypothetical protein recA 6.7 A1S_1165 Putative phage...”

Or search for genetic data about PF11367 in the Fitness Browser