Family Search for PF11611 (DUF4352)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF11611 hits 19 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MSMEG_1236 Mpr protein from Mycobacterium smegmatis str. MC2 155
Aligns to 83:211 / 215 (60.0%), covers 96.8% of PF11611, 116.2 bits

• Decoding phage resistance by mpr and its role in survivability of Mycobacterium smegmatis
  Seniya, Nucleic acids research 2022
  • “...(450 nm) filters. RESULTS Mpr is a membrane-bound protein We initiated our study with Mpr (MSMEG_1236) protein by carrying out a detailed in silico analysis of the protein sequence. SMART web server analysis of the Mpr sequence shows that it has one 18 amino acids long...”

NWMN_1689 hypothetical protein from Staphylococcus aureus subsp. aureus str. Newman
SAOUHSC_01919 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_1740 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
SACOL1847 conserved domain protein, putative from Staphylococcus aureus subsp. aureus COL
Aligns to 81:214 / 331 (40.5%), covers 99.2% of PF11611, 107.7 bits

• Transcriptional Response of Staphylococcus aureus to Sunlight in Oxic and Anoxic Conditions
  McClary, Frontiers in microbiology 2018
  • “...glk Glucokinase 2.70 13.0 thrS Threonyl-tRNA synthetase 0.46 21.6 gudB NAD-specific glutamate dehydrogenase 0.43 20.2 NWMN_1689 Conserved hypothetical protein 0.42 14.5 agrC Staphylococcal accessory gene regulator protein C 0.41 12.1 NWMN_1806 Conserved hypothetical protein 0.39 24.8 NWMN_2026 Aldehyde dehydrogenase family protein 0.38 12.6 glnA Glutamine synthetase...”
• Genomic and Long-Term Transcriptomic Imprints Related to the Daptomycin Mechanism of Action Occurring in Daptomycin- and Methicillin-Resistant Staphylococcus aureus Under Daptomycin Exposure
  Cafiso, Frontiers in microbiology 2020
  • “...CM structure, under-expression was displayed in fts H, incorporating the PBPs into the CM, in SAOUHSC_01919, SAOUHSC_02376, and SAOUHSC_02391 uncharacterized proteins locatedaccording to the GO Cellular Component term (GO-CC): 0016021in the CM, whereas over-expression was recorded only in SAOUHSC_03035 integral membrane protein. Metabolism A complex network...”
• Identification of Methicillin-Resistant Staphylococcus aureus (MRSA) Genetic Factors Involved in Human Endothelial Cells Damage, an Important Phenotype Correlated with Persistent Endovascular Infection
  Xiao, Antibiotics (Basel, Switzerland) 2022
  • “...5.76 SAUSA300_1093 pyrB aspartate carbamoyltransferase catalytic subunit 25.49 1.23 SAUSA300_0517 hypothetical RNA methyltransferase 25.39 8.18 SAUSA300_1740 hypothetical hypothetical protein 25.37 9.05 SAUSA300_0540 hypothetical HAD family hydrolase 25.26 9.24 SAUSA300_2272 hypothetical hypothetical protein 25.25 4.80 SAUSA300_1968 hypothetical putative phage transcriptional regulator 25.23 9.97 SAUSA300_0642 hypothetical hypothetical protein...”
• Staphylococcus aureus ClpX localizes at the division septum and impacts transcription of genes involved in cell division, T7-secretion, and SaPI5-excision
  Jensen, Scientific reports 2019
  • “...hypothetical protein 0,6 4,8E-05 hom homoserine dehydrogenase, hom 0,6 9,4E-04 SAUSA300_1739 hypothetical protein 0,6 8,0E-05 SAUSA300_1740 hypothetical protein, lipid anchored 0,6 1,1E-04 cap1C capsular polysaccharide biosynthesis protein Cap1C 0,6 1,9E-03 clfA clumping factor A 0,6 1,4E-03 glpT glycerol-3-phosphate transporter 0,6 5,3E-04 ureA urease subunit gamma 0,6...”
• A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus
  Chen, Molecular microbiology 2009
  • “...Luong et al ., 2006 ). Only 6 genes ( lacD, norB, scrA , SACOL1476, SACOL1847, SACOL1849) out of 55 that are upregulated in the sarZ mutant in the log phase are also upregulated in the mgrA mutant ( Luong et al ., 2006 ). Other...”
  • “...-2.3 ABC transporter SACOL1476 13.8 Amino acid permiase SACOL1661 3.8 - Acetyl-CoA carboxylase, accC homologue SACOL1847 3.8 Conserved hypothetical protein SACOL1849 2.3 - Conserved hypothetical protein SACOL1915 4.1 Glutamate ABC transporter SACOL1916 3.8 Amino acid ABC transporter SACOL2461 3.7 + Conserved hypothetical protein SACOL2579 3.6 Phytone...”

SA1618 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 81:214 / 331 (40.5%), covers 99.2% of PF11611, 107.7 bits

• The C-terminal region of the RNA helicase CshA is required for the interaction with the degradosome and turnover of bulk RNA in the opportunistic pathogen Staphylococcus aureus
  Giraud, RNA biology 2015
  • “...reductase SA1606 2.8 3.6 2.4 3.2 SA1617 SA1617-SA1618 Uncharacterized protein SA1617 2.8 1.8 3.1 7.0 SA1618 SA1617-SA1618 Uncharacterized protein SA1618 4.2 2.3 4.1 4.4 SAS053 Uncharacterized protein SAS053 2.4 2.3 1.1 2.1 SA1679 SA1678-SA1680 Uncharacterized protein SA1679 2.8 2.6 2.0 3.2 SA1680 SA1679-SA1680 Uncharacterized protein SA1680...”
• Characterizing the effects of inorganic acid and alkaline shock on the Staphylococcus aureus transcriptome and messenger RNA turnover
  Anderson, FEMS immunology and medical microbiology 2010
  • “...sa_c7633s6648_a_at * 3.3 5 stable rpoB SA0588 RNA polymerase, sa_c2650s2225_a_at * 3.5 2.5 15 rpoD SA1618 RNA polymerase sigma factor sa_c8190s7169_at 4.5 2.5 2.5 saeR SA0766 response regulator sa_c5056s4355_a_at 4.9 2.5 ND sarY SA2289 staphylococcal accessory regulator Y sa_c5529s4783_a_at 6.0 2.5 ND sarZ SA2384 staphylococcal accessory...”
  • “...sa_c7633s6648_a_at * 3.2 5 2.5 rpoB SA0588 RNA polymerase sa_c2650s2225_a_at * 2.4 2.5 2.5 rpoD SA1618 RNA polymerase sigma factor sa_c9811s8552_a_at 3.6 2.5 2.5 rpoE SA2120 RNA polymerase sa_c1187s970_at 2.0 2.5 2.5 rpoZ SA1222 RNA polymerase sa_c9851s9296_a_at 2.7 2.5 2.5 rsbu SA2057 sigma factor B regulator...”
• Transcriptome and functional analysis of the eukaryotic-type serine/threonine kinase PknB in Staphylococcus aureus
  Donat, Journal of bacteriology 2009
  • “...of California, Berkeley SA1528 SA1529 SA1532 SA1578 SA1583 SA1618 SA1682 SA1702 SA1703 SA1712 SA1726 SA1746 SA1867 SA1925 SA1937 SA1942 SA1976 SA2221 SA2323...”
• Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycin-intermediate- S. aureus-type resistance to vancomycin
  McAleese, Journal of bacteriology 2006
  • “...b SA1187 b SA1233 SA1249 SA1476 SA1477 SA1514 SA1617 SA1618 SA1619 SA1620 SA1637 SA1638 SA1640 SA1641 SA1645 SA1703 SA1712 SA1725 SA1772 yvqF hsdR vraF vraG...”
• Nucleotide substitution and recombination at orthologous loci in Staphylococcus aureus
  Hughes, Journal of bacteriology 2005
  • “...SA0742 SA0840 SA1001 SA1155 SA1271 SA1297 SA1298 SA1299 SA1618 SA1761 SA1765 SA1799 SA1801 SA1843 SA2008 SA2125 SA2186 SA2187 SA2260 SA2317 SA2333 SA2373 SA2423...”
• Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci
  Dunman, Journal of bacteriology 2001
  • “...SA1140 SA2293 SA0186 SA0021 SA0212 SA0271 SA0363 SA0412 SA1618 SA1937 SA2378 SA2448 SA2430 SA2431 SA2463 SA0746 SA0107 SA0900 SA0899 Role categoryf Adaptation...”

MW1738 conserved hypothetical protein from Staphylococcus aureus subsp. aureus MW2
Aligns to 81:214 / 331 (40.5%), covers 99.2% of PF11611, 107.3 bits

• Nucleotide substitution and recombination at orthologous loci in Staphylococcus aureus
  Hughes, Journal of bacteriology 2005
  • “...MW0862, MW1038, MW1206, MW1328, MW1354, MW1355, MW1356, MW1738, MW1889, MW1895, MW1928, MW1932, MW1962, MW2132, MW2254, MW2320, MW2321, MW2396, MW2449, MW2466,...”

SAB1654 probable membrane protein from Staphylococcus aureus RF122
Aligns to 81:214 / 331 (40.5%), covers 99.2% of PF11611, 106.2 bits

• Phage-mediated horizontal transfer of a Staphylococcus aureus virulence-associated genomic island
  Moon, Scientific reports 2015
  • “...( Fig. 2B ), suggesting a linear form of phage DNA with left flanking near SAB1654 and right flanking near SAB1694 ( Fig. 2A ). However, one cannot rule out the possibility that several intermediates might be detectable as a result of imperfect excision of SaBov...”
  • “...with p1651/p1655 and p1691/pseg, indicating a linear form of phage DNA with left flanking near SAB1654, and right flanking near SAB1694. (C) Southern blot analysis of RF122 chromosomal DNA (C) and phage DNA (P) digested with EcoR I restriction enzyme using a probe specific to the...”

YCDA_BACSU / O34538 Uncharacterized lipoprotein YcdA from Bacillus subtilis (strain 168) (see paper)
Aligns to 33:151 / 354 (33.6%), covers 94.4% of PF11611, 103.8 bits

• A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
  Albaum, Proteome science 2011
  • “...>0.99 <0.000001 741 O34833 <0.000001 0.007364 <0.000001 0.000001 827 O32076 <0.000001 0.000083 >0.99 <0.000001 1344 O34538 <0.000001 0.000020 0.977644 <0.000001 1616 P94565 <0.000001 >0.99 0.264667 0.000003 1033 P54466 <0.000001 0.003793 <0.000001 <0.000001 2382 P33166 <0.000001 <0.000001 0.067524 <0.000001 1605 P02968 <0.000001 0.000001 <0.000001 <0.000001 9369 P37809...”
  • “...<0.000001 <0.000001 1692 O32076 <0.000001 0.000083 >0.99 <0.000001 1344 P24141 0.000001 >0.99 <0.000001 <0.000001 1257 O34538 <0.000001 0.000020 0.977644 <0.000001 1616 P54535 0.000073 >0.99 <0.000001 <0.000001 2391 P54466 <0.000001 0.003793 <0.000001 <0.000001 2382 P02968 <0.000001 0.000001 <0.000001 <0.000001 9369 O31501 0.000036 0.006965 <0.000001 <0.000001 1681 P46920...”

BH3064 hypothetical protein from Bacillus halodurans C-125
Aligns to 84:212 / 215 (60.0%), covers 96.8% of PF11611, 100.1 bits

• Genome analysis of deep-sea thermophilic phage D6E
  Wang, Applied and environmental microbiology 2010
  • “...(ZP_03558146.1, 1e107, 85) Hypothetical protein BH3064, Bacillus halodurans C-125 (NP_243930.1, 5e47, 48) Hypothetical protein Nther_0358, Natranaerobius...”

MAP4270 hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 109:227 / 230 (51.7%), covers 96.8% of PF11611, 93.1 bits

• Discovery of stable and variable differences in the Mycobacterium avium subsp. paratuberculosis type I, II, and III genomes by pan-genome microarray analysis
  Castellanos, Applied and environmental microbiology 2009
  • “...MAP3764 MAP3770 to MAP3776c MAP3814 to MAP3818 MAP4266 to MAP4270 vGI name vGI locus tag(s) GC% vGI-1a vGI-1b MAP0071 to MAP0093 MAP0094 to MAP0103c 65.84 63.89...”
• Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species
  Paustian, BMC genomics 2008
  • “...HOM, AV-SI MAP_RD6 LSPP14/15 MAP-16 27 MAP3814 MAP3818 HOM RDA II60 MAP_RD7 LSPP16 28 MAP4266 MAP4270 HOM, AV-SI LSPP17 MAP-17 MAA, MAS 29 MAP4326c MAP4328c HOM MAP-18 A novel LSP comprised of the ORFs MAP1432 1438c was identified in the present study as absent from sheep...”
• Comparative genomic hybridizations reveal genetic regions within the Mycobacterium avium complex that are divergent from Mycobacterium avium subsp. paratuberculosis isolates
  Paustian, Journal of bacteriology 2005
  • “...MAP3772c MAP3775c MAP3815 MAP3816 MAP3817c MAP3818 MAP4270 MAP4280 Hypothetical protein ABC transporter ATP-binding protein Heavy metal tolerance protein...”

SSA_0300 hypothetical protein from Streptococcus sanguinis SK36
Aligns to 83:209 / 214 (59.3%), covers 98.4% of PF11611, 85.2 bits

• Transcriptome, Phenotypic, and Virulence Analysis of Streptococcus sanguinis SK36 Wild Type and Its CcpA-Null Derivative (ΔCcpA)
  Bai, Frontiers in cellular and infection microbiology 2019
  • “...c , m SSA_0391 a 2,312.95 14,153.22 2.34 0.00000 c184_g18 b , c , m SSA_0300 67.70 371.66 2.21 0.00000 c183_g84 b , c SSA_1949 a 132.20 609.00 2.11 0.00000 c183_g30 m SSA_0509 52.34 358.25 2.40 0.00000 c184_g19 b , m SSA_0572 a 72.24 442.42 2.49...”

lp_3178 extracellular protein from Lactobacillus plantarum WCFS1
F9UT91 Extracellular protein from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
lp_3178 DUF4352 domain-containing protein from Lactiplantibacillus plantarum WCFS1
Aligns to 61:179 / 184 (64.7%), covers 98.4% of PF11611, 79.2 bits

• Transcriptional analysis of the molecular mechanism underlying the response of Lactiplantibacillus plantarum to lactic acid stress conditions
  Jang, Heliyon 2023
  • “...lp_2993 COG0589 lp_2448 2.26 0.0285048 0.0826832 2.34 0.0237935 0.0773064 prophage P2a protein regulator lp_2448 COG1396 lp_3178 2.43 4.62E-34 5.39E-32 2.33 4.31E-31 3.82E-29 extracellular protein lp_3178 ENOG502DPC1 larC2 0.45 0.148891 0.291432 2.33 1.11E-19 5.83E-18 lactate racemization operon protein lp_0107 COG1641 lp_3177 2.37 8.54E-25 6.86E-23 2.29 4.70E-23 3.35E-21...”
  • “...membrane-associated proteins were up- or down-regulated under both acidic conditions. Membrane proteins (lp_1684, lp_3080, lp_2949, lp_3178, lp_3177, lp_0309, lp_1946), amino acid transporter (lp_3278), and manganese ABC transporter (lp_2992) were up-regulated, and cold shock protein (lp_1160, lp_0997), carbohydrate proton transporter (lp_1792), and ammonium transporter (lp_0349) were down-regulated...”
• Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments
  Jung, Scientific reports 2020
  • “...ATPase lp_3055 F9USH5 NOG150102 lp_3177 1.09 0.007399 0.028166 Hypothetical membrane protein lp_3177 F9UT90 COG2217 K17686 lp_3178 1.20 0.004248 0.017189 Extracellular protein lp_3178 F9UT91 NOG111565 copB 2.51 2.27E42 1.09E40 Copper transporting ATPase lp_3363 F9UU49 COG2217 K01533 lp_3421 2.86 9.32E271 6.15E268 gamma-D-glutamate-meso-diaminopimelate muropeptidase lp_3421 F9UUA0 COG0791 K18718 mapB...”
• Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments.
  Jung, Scientific reports 2020
  • “...0.028166 Hypothetical membrane protein lp_3177 F9UT90 COG2217 K17686 lp_3178 1.20 0.004248 0.017189 Extracellular protein lp_3178 F9UT91 NOG111565 copB 2.51 2.27E42 1.09E40 Copper transporting ATPase lp_3363 F9UU49 COG2217 K01533 lp_3421 2.86 9.32E271 6.15E268 gamma-D-glutamate-meso-diaminopimelate muropeptidase lp_3421 F9UUA0 COG0791 K18718 mapB 1.50 3.68E08 3.19E07 Maltose phosphorylase lp_0181 F9USZ3...”

LSEI_1970 hypothetical protein from Lactobacillus casei ATCC 334
Aligns to 77:198 / 201 (60.7%), covers 99.2% of PF11611, 71.4 bits

• New Genes Involved in Mild Stress Response Identified by Transposon Mutagenesis in Lactobacillus paracasei
  Palud, Frontiers in microbiology 2018
  • “...H E S LSEI_1931 HP S A LSEI_1945 Phage protein H LSEI_1951 Phage protein E LSEI_1970 HP E LSEI_2024 HP H LSEI_2033 Transcriptional regulator H LSEI_2049 Capsular polysaccharide biosynthesis protein H (P) LSEI_2059 Transcriptional regulator E LSEI_2082 Exonuclease H LSEI_2091 Integrase H LSEI_2096 HP H LSEI_2129...”

YXKC_BACSU / P94356 Uncharacterized protein YxkC from Bacillus subtilis (strain 168) (see 2 papers)
Aligns to 46:179 / 180 (74.4%), covers 94.4% of PF11611, 58.1 bits

• A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
  Albaum, Proteome science 2011
  • “...>0.99 <0.000001 685 P35136 <0.000001 >0.99 0.000003 <0.000001 1498 P37808 <0.000001 >0.99 >0.99 <0.000001 1219 P94356 <0.000001 0.037934 0.414572 <0.000001 2053 P80877 <0.000001 >0.99 >0.99 0.000002 892 P27206 <0.000001 0.000004 0.000028 <0.000001 2232 P37871 <0.000001 0.399160 0.901907 <0.000001 1938 O34992 <0.000001 0.085647 <0.000001 <0.000001 1215 P37476...”
  • “...0.000188 <0.000001 1837 P35136 <0.000001 >0.99 0.000003 <0.000001 1498 P37808 <0.000001 >0.99 >0.99 <0.000001 1219 P94356 <0.000001 0.037934 0.414572 <0.000001 2053 P27206 <0.000001 0.000004 0.000028 <0.000001 2232 P37871 <0.000001 0.399160 0.901907 <0.000001 1938 O34992 <0.000001 0.085647 <0.000001 <0.000001 1215 P37476 <0.000001 >0.99 <0.000001 <0.000001 3203 Q04747...”

Sca_2250 hypothetical protein from Staphylococcus carnosus subsp. carnosus TM300
Aligns to 43:162 / 353 (34.0%), covers 96.0% of PF11611, 54.4 bits

• Secretome analysis revealed adaptive and non-adaptive responses of the Staphylococcus carnosus femB mutant
  Nega, Proteomics 2015
  • “...2.8 + 25.3 7.9 Sca0421 Hypothetical protein Sca_0421 6.2 + 34.5 9.7 Sca2250 Hypothetical protein Sca_2250 9.2 + 37.2 4.5 Membrane localization LtaS 1 Polyglycerol phosphate synthase LtaS Sca_0366 SA0674 SACOL0778 4.2 74.3 9.0 LtaS 2 Polyglycerol phosphate synthase LtaS Sca_0366 SA0674 SACOL0778 3.5 74.3 9.0...”

GALLO_0814 hypothetical secreted protein from Streptococcus gallolyticus UCN34
Aligns to 61:187 / 421 (30.2%), covers 83.2% of PF11611, 47.4 bits

• Transcriptome analysis of Streptococcus gallolyticus subsp. gallolyticus in interaction with THP-1 macrophage-like cells
  Grimm, PloS one 2017
  • “...0.34 n. r. Unknown function GALLO_0901 hypothetical protein n. r. -1.63 0.04 n. r. 0.32 GALLO_0814 hypothetical protein n. r. -1.25 0.04 n. r. 0.42 GALLO_1321 glutamate-rich protein GrpB -1.39 n. r. 0.01 0.38 n. r. transport system GALLO_1556 amino acid ABC transporter substrate-binding protein -1.89...”

SIR_1455 DUF5105 domain-containing protein from Streptococcus intermedius B196
Aligns to 26:146 / 378 (32.0%), covers 72.0% of PF11611, 40.9 bits

• A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria
  Whitney, eLife 2017
  • “...10.64 0.97 - Putative bacteriocin accessory protein SIR_1027 63.00 67.64 0.93 - Elongation Factor Tu SIR_1455 14.00 15.96 0.88 - - SIR_0758 13.00 15.20 0.86 - - SIR_1387 9.33 11.40 0.82 - Putative extracellular solute-binding protein SIR_0492 12.33 15.20 0.81 - Putative adhesion protein SIR_1033 17.67...”

AC3_2280 DUF4352 domain-containing protein from Clostridium perfringens E str. JGS1987
B1BW51 DUF4352 domain-containing protein from Clostridium perfringens E str. JGS1987
Aligns to 61:197 / 201 (68.2%), covers 83.2% of PF11611, 38.5 bits

• A Tailored Multivariate Mixture Model for Detecting Proteins of Concordant Change Among Virulent Strains of Clostridium Perfringens
  Chen, Journal of the American Statistical Association 2018
  • “...2.29 4.94 6.59 4.38 1.83 80.20 pmbA Q8XNJ3 3.98 2.83 5.69 5.03 4.38 1.25 79.95 AC3_2280 B1BW51 3.74 2.50 5.53 5.66 4.36 1.52 78.02 CJD_1905 B1V1K7 4.48 3.25 1.85 5.64 3.80 1.54 44.89 HA1_04034 H7CTN9 3.77 2.83 4.36 3.86 3.71 0.64 40.68 prtP CPR_0968 Q0SUB6 3.29...”
• A Tailored Multivariate Mixture Model for Detecting Proteins of Concordant Change Among Virulent Strains of Clostridium Perfringens
  Chen, Journal of the American Statistical Association 2018
  • “...4.94 6.59 4.38 1.83 80.20 pmbA Q8XNJ3 3.98 2.83 5.69 5.03 4.38 1.25 79.95 AC3_2280 B1BW51 3.74 2.50 5.53 5.66 4.36 1.52 78.02 CJD_1905 B1V1K7 4.48 3.25 1.85 5.64 3.80 1.54 44.89 HA1_04034 H7CTN9 3.77 2.83 4.36 3.86 3.71 0.64 40.68 prtP CPR_0968 Q0SUB6 3.29 2.41...”

SH1011 hypothetical protein from Staphylococcus haemolyticus JCSC1435
Aligns to 84:199 / 205 (56.6%), covers 96.8% of PF11611, 37.4 bits

• The Influence of Probiotic Supplementation on the Obesity Indexes, Neuroinflammatory and Oxidative Stress Markers, Gut Microbial Diversity, and Working Memory in Obese Thai Children
  Khongtan, Foods (Basel, Switzerland) 2023
  • “...previously. A Shimadzu-HPLC system (Shimadzu, Kyoto, Japan) with a UV-Vis detector and a Shodex SUGAR SH1011 column (Showa Denko K.K., Tokyo, Japan) was used. Fecal samples were also examined for putrefaction biomarkers (indole, cresol, and skatole) using the HPLC with a C18 column (Showa Denko K.K.,...”
• Effects of Synbiotic Lacticaseibacillus paracasei, Bifidobacterium breve, and Prebiotics on the Growth Stimulation of Beneficial Gut Microbiota
  Kaewarsar, Foods (Basel, Switzerland) 2023
  • “...stored in an amber glass vial tube. A SUGAR column (6 m, 8 300 mm, SH1011, Shodex, Munich, Germany) was used to identify these organic acids. The analytical column was maintained at a constant temperature of 75 C. The sample solution was eluted with 5 mM...”
• Potential use of Bacillus paramycoides for the production of the biopolymer polyhydroxybutyrate from leftover carob fruit agro-waste
  Djerrab, AIMS microbiology 2022
  • “...liquid chromatography (HPLC) provided with a refractive index (R1) detector (50 C) and a column (SH1011, 8.0 300 nm, Shodex) [19] . 2.3. Screening of a bacterial strain producing PHB The producing PHB bacterial strain was isolated from a soil sample collected from the botanic garden...”
• Extended Cheese Whey Fermentation Produces a Novel Casein-Derived Antibacterial Polypeptide That Also Inhibits Gelatinases MMP-2 and MMP-9
  Santos, International journal of molecular sciences 2021
  • “...Germany) with a pore size of 0.2 m. Samples were injected in a Schodex SUGAR SH1011 column (Waters Corporation, Milford, MA, USA), and separations were achieved at 50 C, using 5 mM sulfuric acid as the mobile phase (isocratic elution) at a flow rate of 0.6...”

CAC1868 Uncharacterized secreted protein, homolog YXKC Bacillus subtilis from Clostridium acetobutylicum ATCC 824
Aligns to 61:184 / 202 (61.4%), covers 84.8% of PF11611, 34.4 bits

• Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum
  Borden, Applied and environmental microbiology 2007
  • “...rank with increasing transfers, while other genes (e.g., CAC1868 to CAC1870) are more gradually enriched during the selection process. For each biological...”
  • “...because only one asterisk is used to mark the contiguous genes CAC1868 to CAC1870). These 16 genes not only were ranked in the top 5% as of the 13th transfer...”

BSU05730 putative lipoprotein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 83:195 / 236 (47.9%), covers 84.0% of PF11611, 28.4 bits

• The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
  Eichenberger, PLoS biology 2004
  • “...uxuA (BSU12340), ybaN (BSU01570), ybaS (BSU01590), ycgF (BSU03090), ycgM (BSU03200), ycgN (BSU03210), ydcI (BSU04780), ydhF (BSU05730), yeeA (BSU06760), yeeB (BSU06770), yeeC (BSU06780), yefA (BSU06730), yefB (BSU06740), yefC (BSU06750), yfhP (BSU08620), yfkO (BSU07830), yfmC (BSU07520), yfmD (BSU07510), yfnD (BSU07310), yfnE (BSU07300), yfnF (BSU07290), yfnG (BSU07280), yfnH (BSU07270),...”

Or search for genetic data about PF11611 in the Fitness Browser