Family Search for PF11737 (DUF3300)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF11737 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AEX15_16220 DUF3300 domain-containing protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 60:340 / 540 (52.0%), covers 99.6% of PF11737, 281.8 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...intergenic 4233585 C A AEX15_16055 SeKA_A4409 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4286504 T C NS Ser Pro 265 AEX15_16220 SeKA_A4445 hypothetical protein 4325107 A G S Gly Gly 137 AEX15_16390 SeKA_A4481 putative fimbrial outer membrane usher protein 4359640 G T NS Leu Met 704 intergenic 4463447 T C AEX15_22970...”

STM0157 putative outer membrane protein from Salmonella typhimurium LT2
Aligns to 60:340 / 540 (52.0%), covers 99.6% of PF11737, 281.7 bits

• Comparison of Phenotype and Genotype Virulence and Antimicrobial Factors of Salmonella Typhimurium Isolated from Human Milk
  Pławińska-Czarnak, International journal of molecular sciences 2023
  • “...STM1701 yciW Uncharacterized protein YciW stop_lost HIGH 184611 GTGATGATCG GG Deletion gacgatcatcac gaCC 850_857delGATCATCA Asp284fs STM0157 yacH Uncharacterized protein YacH Frameshift variant HIGH 2162286 TAAAAAAAATCAA TAAAAAAAAATCAA Insertion ttgattttttttaat TTGATTTTTTTTTAat 67_68insT Ile23_Phe24fs STM2082 rfbP Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) Frameshift variant HIGH 2292159 CGC CGGC Insertion cgcaaa CGGCaaa...”

SeKA_A4445 DUF3300 domain-containing protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 60:342 / 542 (52.2%), covers 99.6% of PF11737, 281.5 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...4233585 C A AEX15_16055 SeKA_A4409 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4286504 T C NS Ser Pro 265 AEX15_16220 SeKA_A4445 hypothetical protein 4325107 A G S Gly Gly 137 AEX15_16390 SeKA_A4481 putative fimbrial outer membrane usher protein 4359640 G T NS Leu Met 704 intergenic 4463447 T C AEX15_22970 SeKA_A4665...”

SC0156 putative outer membrane protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 60:339 / 539 (51.9%), covers 99.6% of PF11737, 281.2 bits

• The Novel Compounds with Biological Activity Derived from Soil Fungi in the Past Decade
  Zhang, Drug design, development and therapy 2022
  • “...versicorin 520 ( Figure 8B ), was isolated from mycelial solid cultures of Aspergillus versicolor SC0156. The new compound versicorin 520 possesses a hexahydro-2 H -naphtho[1,8- bc ]furan moiety, which is a rare type of the lovastatin-analogous compounds. 159 Three new lovastatin analogues 521523 ( Figure...”
  • “...multidrug resistant (MDR) mediated by P-glycoprotein (P-gp) modulator [ 158 ] 520 Versicorin Aspergillus versicolor SC0156 Guangdong Province, China - [ 159 ] 521522, 523* Unnamed Aspergillus sclerotiorum PSU-RSPG178 Surat Thani Province, Thailand Activity against HMG-CoA reductase [ 160 ] 524 Asterreusin A Aspergillus terreus YIM...”

YacH / b0117 DUF3300 domain-containing protein YacH from Escherichia coli K-12 substr. MG1655 (see paper)
b0117 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 74:363 / 617 (47.0%), covers 100.0% of PF11737, 268.5 bits

• Medium-Chain-Length Fatty Acid Catabolism in Cupriavidus necator H16: Transcriptome Sequencing Reveals Differences from Long-Chain-Length Fatty Acid β-Oxidation and Involvement of Several Homologous Genes
  Strittmatter, Applied and environmental microbiology 2023 (secret)
• Transcriptional profile of the Escherichia coli response to the antimicrobial insect peptide cecropin A
  Hong, Antimicrobial agents and chemotherapy 2003
  • “...(SL v C) LvC P (L v C) dr dc yacH (b0117) mbhA (b0230) yaiL (b0354) acrB (b0462) ylcD (b0574) entE (b0594) ybfC (b0704) rh1E (b0797) ybiA (b0798) ybiX (b0804)...”
• A functional update of the Escherichia coli K-12 genome
  Serres, Genome biology 2001
  • “...leucine biosynthesis, LysR family b0814 ec_1234 ompX m Outer membrane protease, receptor for phage OX2 b0117 ec_0171 yacH pm Putative membrane protein b0170 ec_0246 tsf f Protein chain elongation factor EF-Ts b0236 ec_0334 prfH pf Putative peptide chain release factor b0023 ec_0031 rpsT s 30S ribosomal...”

UTI89_C0130 hypothetical protein from Escherichia coli UTI89
Aligns to 74:363 / 585 (49.6%), covers 100.0% of PF11737, 265.3 bits

• Cathelicidin Peptides Restrict Bacterial Growth via Membrane Perturbation and Induction of Reactive Oxygen Species
  Rowe-Magnus, mBio 2019
  • “...phosphate- l -ara4N flippase subunit arnF ( yfbJ ) UTI89_C1152 1.40 9.36E10 Hypothetical protein orf UTI89_C0130 1.39 2.93E05 Hypothetical protein yacH UTI89_C1870 1.34 5.84E05 Peptidoglycan d -transpeptidase ynhG UTI89_C0026 1.32 4.08E09 Hypothetical protein yaaY UTI89_C3182 1.31 4.40E09 Hypothetical protein ygdI UTI89_C0880 1.31 5.86E07 ATP-dependent endonuclease ybjD...”

Or search for genetic data about PF11737 in the Fitness Browser