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Family Search for PF11738 (DUF3298)

Running HMMer for PF11738

PF11738 hits 59 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CD630_15590, CDIF630erm_01728 anti-sigma-V factor rsiV from Clostridioides difficile 630
CD1559 hypothetical protein from Clostridium difficile 630
Aligns to 199:284 / 289 (29.8%), covers 97.6% of PF11738, 85.8 bits

RSIV_BACSU / O05403 Anti-sigma-V factor RsiV from Bacillus subtilis (strain 168) (see 2 papers)
BSU27130 anti-sigma(V) factor from Bacillus subtilis subsp. subtilis str. 168
NP_390591 anti-sigma(V) factor from Bacillus subtilis subsp. subtilis str. 168
Aligns to 189:272 / 285 (29.5%), covers 98.8% of PF11738, 84.4 bits

Cthe_1437 hypothetical protein from Clostridium thermocellum ATCC 27405
Aligns to 200:287 / 300 (29.3%), covers 96.4% of PF11738, 82.0 bits

CD630_15600 DUF3298 and DUF4163 domain-containing protein from Clostridioides difficile 630
CD1560 hypothetical protein from Clostridium difficile 630
Aligns to 160:245 / 251 (34.3%), covers 96.4% of PF11738, 78.8 bits

CD0543 hypothetical protein from Clostridium difficile 630
Aligns to 193:270 / 287 (27.2%), covers 97.6% of PF11738, 75.0 bits

CDR20291_1409 hypothetical protein from Clostridium difficile R20291
Aligns to 160:245 / 251 (34.3%), covers 96.4% of PF11738, 73.5 bits

OG1RF_12447 RsiV family protein from Enterococcus faecalis OG1RF
Aligns to 196:281 / 294 (29.3%), covers 96.4% of PF11738, 71.4 bits

EF3179 conserved hypothetical protein from Enterococcus faecalis V583
EF_3179 RsiV family protein from Enterococcus faecalis V583
Aligns to 196:281 / 294 (29.3%), covers 95.2% of PF11738, 70.5 bits

PGN_1502 hypothetical protein from Porphyromonas gingivalis ATCC 33277
Aligns to 187:266 / 290 (27.6%), covers 100.0% of PF11738, 70.1 bits

CPR_2297 hypothetical protein from Clostridium perfringens SM101
Aligns to 149:224 / 236 (32.2%), covers 98.8% of PF11738, 67.9 bits

lpl0749 hypothetical protein from Legionella pneumophila str. Lens
Aligns to 137:214 / 231 (33.8%), covers 100.0% of PF11738, 64.5 bits

LPC_2581 endo-1,4-beta-xylanase-like protein from Legionella pneumophila str. Corby
Aligns to 137:214 / 231 (33.8%), covers 100.0% of PF11738, 64.5 bits

lpp0767 hypothetical protein from Legionella pneumophila str. Paris
Aligns to 137:214 / 231 (33.8%), covers 100.0% of PF11738, 64.4 bits

lpg0712 endo-1,4-beta-xylanase-like from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Aligns to 137:214 / 231 (33.8%), covers 100.0% of PF11738, 64.4 bits

BTHUR0008_RS23575 DUF3298 and DUF4163 domain-containing protein from Bacillus thuringiensis serovar berliner ATCC 10792
Aligns to 154:229 / 247 (30.8%), covers 98.8% of PF11738, 61.4 bits

Cthe_0057 hypothetical protein from Clostridium thermocellum ATCC 27405
Aligns to 122:194 / 210 (34.8%), covers 96.4% of PF11738, 60.0 bits

CD3580 hypothetical protein from Clostridium difficile 630
Aligns to 144:217 / 247 (30.0%), covers 100.0% of PF11738, 59.5 bits

CDR20291_3418 DUF3298 and DUF4163 domain-containing protein from Clostridioides difficile R20291
Aligns to 144:217 / 247 (30.0%), covers 100.0% of PF11738, 59.4 bits

HMPREF1322_RS07770 RsiV family protein from Porphyromonas gingivalis W50
Aligns to 175:254 / 271 (29.5%), covers 98.8% of PF11738, 59.1 bits

PG1308 hypothetical protein from Porphyromonas gingivalis W83
Aligns to 185:264 / 281 (28.5%), covers 98.8% of PF11738, 59.0 bits

A1S_0556 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 169:247 / 275 (28.7%), covers 100.0% of PF11738, 58.6 bits

ABBFA_003004 hypothetical protein from Acinetobacter baumannii AB307-0294
Aligns to 189:267 / 295 (26.8%), covers 100.0% of PF11738, 58.4 bits

HMPREF0010_01698 RsiV family protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Aligns to 207:285 / 313 (25.2%), covers 98.8% of PF11738, 57.0 bits

P9WIN9 Immunogenic protein MPT64 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
NP_216496 immunogenic protein Mpt64 from Mycobacterium tuberculosis H37Rv
NP_216496, Rv1980c IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) from Mycobacterium tuberculosis H37Rv
Mb2002c IMMUNOGENIC PROTEIN MPT64 (ANTIGEN MPT64/MPB64) from Mycobacterium bovis AF2122/97
Aligns to 145:221 / 228 (33.8%), covers 97.6% of PF11738, 55.2 bits

APJL_1469 hypothetical protein from Actinobacillus pleuropneumoniae serovar 3 str. JL03
Aligns to 228:305 / 335 (23.3%), covers 98.8% of PF11738, 54.9 bits

APP7_1495 hypothetical protein from Actinobacillus pleuropneumoniae serovar 7 str. AP76
Aligns to 251:328 / 358 (21.8%), covers 98.8% of PF11738, 54.8 bits

MUL_5032 immunogenic protein Mpt64 from Mycobacterium ulcerans Agy99
Aligns to 147:223 / 230 (33.5%), covers 96.4% of PF11738, 54.3 bits

BP1296 RsiV family protein from Bordetella pertussis Tohama I
NP_880063 putative lipoprotein from Bordetella pertussis Tohama I
Aligns to 182:261 / 275 (29.1%), covers 83.1% of PF11738, 53.8 bits

TDE0098 conserved domain protein from Treponema denticola ATCC 35405
Aligns to 153:236 / 239 (35.1%), covers 98.8% of PF11738, 53.0 bits

MAP3084c hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 144:220 / 227 (33.9%), covers 98.8% of PF11738, 52.6 bits

Mjls_1842 immunogenic protein MPB64/MPT64 precursor from Mycobacterium sp. JLS
Aligns to 148:224 / 232 (33.2%), covers 97.6% of PF11738, 52.0 bits

ESTR2_MYCTU / I6YF08 Esterase Rv3036c; EC 3.1.1.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
Rv3036c PROBABLE CONSERVED SECRETED PROTEIN TB22.2 from Mycobacterium tuberculosis H37Rv
Aligns to 144:220 / 227 (33.9%), covers 98.8% of PF11738, 51.8 bits

MMAR_1665 hypothetical protein from Mycobacterium marinum M
Aligns to 141:217 / 224 (34.4%), covers 97.6% of PF11738, 49.6 bits

BLi04185 hypothetical protein from Bacillus licheniformis DSM 13
Aligns to 139:224 / 227 (37.9%), covers 97.6% of PF11738, 49.3 bits

PDAC_BACSU / O34798 Peptidoglycan-N-acetylmuramic acid deacetylase PdaC; Peptidoglycan MurNAc deacetylase; Polysaccharide deacetylase PdaC; EC 3.5.1.- from Bacillus subtilis (strain 168) (see 2 papers)
BSU12100 secreted deoxyriboendonuclease from Bacillus subtilis subsp. subtilis str. 168
Aligns to 156:235 / 467 (17.1%), covers 98.8% of PF11738, 48.5 bits

BJAB0868_02946 RsiV family protein from Acinetobacter baumannii BJAB0868
Aligns to 163:242 / 262 (30.5%), covers 86.7% of PF11738, 47.2 bits

MSMEG_1051 immunogenic protein MPB64/MPT64 from Mycobacterium smegmatis str. MC2 155
Aligns to 150:225 / 233 (32.6%), covers 97.6% of PF11738, 46.8 bits

APL_1437 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 228:305 / 335 (23.3%), covers 98.8% of PF11738, 46.4 bits

A1S_1734 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 130:203 / 224 (33.0%), covers 95.2% of PF11738, 46.3 bits

MAV_4130 immunogenic protein MPT64 from Mycobacterium avium 104
Aligns to 155:251 / 258 (37.6%), covers 90.4% of PF11738, 46.1 bits

S5ZKA9 Endo-1,4-beta-xylanase from Treponema pedis str. T A4
Aligns to 146:228 / 231 (35.9%), covers 94.0% of PF11738, 45.9 bits

HD0195 hypothetical protein from Haemophilus ducreyi 35000HP
Aligns to 227:304 / 332 (23.5%), covers 97.6% of PF11738, 44.7 bits

PP_4920 lipoprotein, putative from Pseudomonas putida KT2440
Aligns to 156:233 / 248 (31.5%), covers 97.6% of PF11738, 43.4 bits

ACIAD1781 conserved hypothetical protein from Acinetobacter sp. ADP1
Aligns to 178:252 / 271 (27.7%), covers 95.2% of PF11738, 42.8 bits

B1MNL7 Immunogenic protein MPT64 from Mycobacteroides abscessus (strain ATCC 19977 / DSM 44196 / CCUG 20993 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543 / L948)
MAB_1835c Immunogenic protein MPT64 precursor from Mycobacterium abscessus ATCC 19977
Aligns to 161:268 / 275 (39.3%), covers 90.4% of PF11738, 42.2 bits

MSMEG_1150 hypothetical protein from Mycobacterium smegmatis str. MC2 155
Aligns to 158:260 / 273 (37.7%), covers 97.6% of PF11738, 40.0 bits

PA4972 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 156:233 / 248 (31.5%), covers 97.6% of PF11738, 37.6 bits

PFLU0494 putative lipoprotein from Pseudomonas fluorescens SBW25
Aligns to 156:233 / 248 (31.5%), covers 98.8% of PF11738, 37.3 bits

MAB_1003c hypothetical protein from Mycobacterium abscessus ATCC 19977
Aligns to 159:260 / 272 (37.5%), covers 97.6% of PF11738, 36.9 bits

PSPTO_4974 lipoprotein, putative from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 156:233 / 248 (31.5%), covers 97.6% of PF11738, 35.2 bits

MAP0087 hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 152:224 / 238 (30.7%), covers 83.1% of PF11738, 32.9 bits

MAP1858 hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 147:247 / 255 (39.6%), covers 97.6% of PF11738, 31.9 bits

MAV_2381 hypothetical protein from Mycobacterium avium 104
Aligns to 147:247 / 255 (39.6%), covers 97.6% of PF11738, 31.9 bits

MUL_3803 conserved hypothetical secreted protein from Mycobacterium ulcerans Agy99
MMAR_3871 hypothetical protein from Mycobacterium marinum M
Aligns to 151:251 / 259 (39.0%), covers 98.8% of PF11738, 31.2 bits

MAV_0109 hypothetical protein from Mycobacterium avium 104
Aligns to 147:247 / 261 (38.7%), covers 81.9% of PF11738, 30.5 bits

MAP0115 hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 147:247 / 261 (38.7%), covers 81.9% of PF11738, 30.5 bits

MUL_4936 conserved secreted protein from Mycobacterium ulcerans Agy99
Aligns to 138:240 / 252 (40.9%), covers 97.6% of PF11738, 30.0 bits

MMAR_0160 hypothetical protein from Mycobacterium marinum M
Aligns to 149:251 / 263 (39.2%), covers 97.6% of PF11738, 29.3 bits

XC_2828 hypothetical protein from Xanthomonas campestris pv. campestris str. 8004
Aligns to 173:264 / 280 (32.9%), covers 45.8% of PF11738, 26.6 bits

Or search for genetic data about PF11738 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory