Family Search for PF11742 (DUF3302)

Running HMMer for PF11742

PF11742 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YiaW / b3587 DUF3302 domain-containing protein YiaW from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P0ADK5 Inner membrane protein YiaW from Escherichia coli O157:H7
ECs4463 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 3:79 / 107 (72.0%), covers 98.7% of PF11742, 146.7 bits

• Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica.
  Paparoditis, Biochimica et biophysica acta 2014
  • “...unknown unknown Q7UGF9 7 9.B32 SdpC (Peptide-Antibiotic Killer Factor) Immunity Protein, SdpI (SdpI) Family 9.B.32.1.2 P0ADK5 2 unknown unknown Q7ULG4 3 9.B.45 Arg/Asp/Asp (RDD) Family 9.B.45.1.2 Q465I3 3 unknown unknown Q7UXA5 4 9.B.45.1.2 Q465I3 3 unknown unknown Q7UL03 4 9.B.59 Putative Peptide Transporter Carbon Starvation CstA...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...yiaG 2.73 2 ECs4160 rpoA -4.11 1 ECs4449 xylF 2.34 2 ECs4163 rpsM -3.05 1 ECs4463 yiaW 2.75 2 ECs4166 rplO -3.63 1 ECs4464 aldB 3.02 2 ECs4167 rpmD -3.70 1 ECs4473 yibH 3.78 2 ECs4168 rpsE -3.75 1 ECs4475 mtlA 2.84 2 ECs4169 rplR -3.75...”

ECs4474 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Z5022 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 3:79 / 120 (64.2%), covers 98.7% of PF11742, 140.0 bits

• Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts
  Crozier, Frontiers in microbiology 2016
  • “...as #2 and 3 for level of induction, at 50-fold. Probes corresponding to Z5022 and ECs4474 were induced 270- to 300-fold in spinach root exudates, but repressed in spinach leaf lysates and lettuce CWPS (392-fold). Some of these genes are unique to the O157:H7 serotype (...”
  • “...(99) NS 34.86 NS -12.47 ECs4115 aaeX, Shigella flexneri 2002017 (99) 24.15 2.86 NS NS ECs4474 yibI, Shigella flexneri Shi06HN006 (99) -3.10 267.91 NS -92.50 ECs4491 M23 peptidase domain protein, Shigella boydii CDC 308394 (98) NS -19.12 NS 10.08 ECs4970 x x Galactidol-1-phosphatol dehydrogenase, Citrobacter rodentium...”
• Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts
  Crozier, Frontiers in microbiology 2016
  • “...were ranked as #2 and 3 for level of induction, at 50-fold. Probes corresponding to Z5022 and ECs4474 were induced 270- to 300-fold in spinach root exudates, but repressed in spinach leaf lysates and lettuce CWPS (392-fold). Some of these genes are unique to the O157:H7...”

YibI / b3598 DUF3302 domain-containing protein YibI from Escherichia coli K-12 substr. MG1655 (see paper)
ETEC_3840 DUF3302 domain-containing protein from Escherichia coli ETEC H10407
b3598 predicted inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 3:79 / 120 (64.2%), covers 98.7% of PF11742, 140.0 bits

• The molecular basis for control of ETEC enterotoxin expression in response to environment and host
  Haycocks, PLoS pathogens 2015
  • “...TGTGA CGGGGC T A ACA ( ETEC_3806 ) ( wecH ) 4153055 TGTGA TCTGAA TCACA ETEC_3840 yibI TGTGA TCTACAG CA TG 4153191 TGTGA TTGATA TCACA ETEC_3841 mtlA TGTGA TGAACG TCAC G 4158433 n.d. ETEC_3846 lldP 4196869 TG CA A TCGATA TCACA ETEC_3886 dinD 4251326 CT T...”
• Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli
  Brown, Proceedings of the National Academy of Sciences of the United States of America 2004
  • “...(b4060); yjcC (b4061) nupG (b2964) mtlA (b3599); yibI (b3598) b1458 (b1458) tnaL (b3707) qseA (b3243); yhcR (b3242) yeaA (b1778); b1777 (b1777); gapA (b1779)...”

Q7ULG4 Inner membrane protein from Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
Aligns to 35:110 / 137 (55.5%), covers 84.4% of PF11742, 60.8 bits

• Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica
  Paparoditis, Biochimica et biophysica acta 2014
  • “...9.B32 SdpC (Peptide-Antibiotic Killer Factor) Immunity Protein, SdpI (SdpI) Family 9.B.32.1.2 P0ADK5 2 unknown unknown Q7ULG4 3 9.B.45 Arg/Asp/Asp (RDD) Family 9.B.45.1.2 Q465I3 3 unknown unknown Q7UXA5 4 9.B.45.1.2 Q465I3 3 unknown unknown Q7UL03 4 9.B.59 Putative Peptide Transporter Carbon Starvation CstA (CstA) Family 9.B.59.1.3 Q5JIF7...”

Or search for genetic data about PF11742 in the Fitness Browser