Family Search for PF11769 (DUF3313)

PF11769 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PC358_04000 DUF3313 domain-containing protein from Pseudomonas capeferrum
Aligns to 29:213 / 225 (82.2%), covers 100.0% of PF11769, 204.5 bits

• Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417
  Berendsen, BMC genomics 2015
  • “...to the production of the siderophores described above, except for one gene cluster in WCS358 (PC358_04000 - PC358_4180). This gene cluster putatively encodes three NRPS that share 100% identity in a BLASTp search against PsoA, PsoB and PsoC. PsoA-C are responsible for the biosynthesis of the...”

YdcL / b1431 DUF3313 domain-containing lipoprotein YdcL from Escherichia coli K-12 substr. MG1655 (see 3 papers)
P64451 Uncharacterized lipoprotein YdcL from Escherichia coli (strain K12)
b1431 predicted lipoprotein from Escherichia coli str. K-12 substr. MG1655
Z2287 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
ECs2036 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 30:214 / 222 (83.3%), covers 99.5% of PF11769, 203.8 bits

• Biodistribution of ⁸⁹Zr-DFO-labeled avian pathogenic Escherichia coli outer membrane vesicles by PET imaging in chickens
  Li, Poultry science 2023
  • “...P0ADT8 YGIM Signal transduction mechanisms Cell membrane 294 P0AB26 YCEB Function unknown Cell membrane 295 P64451 YDCL Function unknown Cell membrane 296 P75818 YBJP Function unknown Cell membrane 297 P0AA91 YEAY Function unknown Cell membrane 298 P64564 YGGT Function unknown Cell membrane 299 P77717 YBAY Function...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b0735 b0741 b0772 b0830 b1050 b1063 b1079 b1104 b1105 b1209 b1283 b1382 b1431 b1491 b1510 49.65 P 569.75 P 211 P 1,508.05 P 467.95 P 43.3 P 266 P 12.75 P 68.8 P...”
• Identification of the CRP regulon using in vitro and in vivo transcriptional profiling
  Zheng, Nucleic acids research 2004
  • “...adhE arcA argR b0846 b1329 b1431 b1513_ydeYZ_b1516_yneB b2085_b2084_b2083 b2448_b2449 b2450 b2462_b2461_b2459_eutI_cchA b2463 b2611_ypjE_yfjD b2710_ygbD...”
• Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut
  Bakkeren, eLife 2021
  • “...coli 536 P2 cat Z2124 cat on P2 Sm, Cm This study SL1344 P2 pM975 Z2287 P2 cured; bla Sm, Amp This study E. coli ESBL15 Z2115 CTX-M1 on pESBL Amp Bakkeren et al., 2019 ; Tschudin-Sutter et al., 2016 14028S Sm R T186 strAB on...”
• Transcriptional responses of Escherichia coli K-12 and O157:H7 associated with lettuce leaves
  Fink, Applied and environmental microbiology 2012
  • “...Z5714 Transport and binding proteins Z2243 Z2299 Z2287 1758 aem.asm.org Applied and Environmental Microbiology Downloaded from http://aem.asm.org/ on February...”
• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...20866 L (IM or OM) OM 1040 0 LSGC 23 V 2 uncharacterized lipoprotein YdcL Z2287 ydcL 24426 L (IM or OM) unkn 901 0 LSGC 21 A 2 type II secretion protein L7044 etpO 15051 L (IM or OM) mscl 901 36 ISGC 24 H...”
• Pasteurella haemolytica serotype 2 contains the gene for a noncapsular serotype 1-specific antigen
  Gonzalez, Infection and immunity 1995
  • “...of California, Berkeley pPGA2 M13 forward Z2285 Z2286 Z2287 Z2288 Z2289 Z2290 Z2291 Z2292 Z2293 Z2294 M13 reverse pPGA2.6 M13 forward M13 reverse Primer...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...ynaF 3.42 2 ECs2463 ynjE -4.04 1 ECs2028 ydcJ 3.64 2 ECs2467 gdhA -5.15 1 ECs2036 ydcL 3.78 2 ECs2491 yeaF -2.61 1 ECs2044 ydcS 5.22 2 ECs2492 yeaG 4.08 2 ECs2045 ydcT 5.23 2 ECs2511 yeaW 2.43 2 ECs2054 ydcU 2.59 2 ECs2514 fadD 2.50...”

c1856 Hypothetical lipoprotein ydcL precursor from Escherichia coli CFT073
Aligns to 30:214 / 222 (83.3%), covers 99.5% of PF11769, 202.3 bits

• Genome-wide detection of fitness genes in uropathogenic Escherichia coli during systemic infection
  Subashchandrabose, PLoS pathogens 2013
  • “...c2628 GntR-type regulator 10.66 ydhK c2037 Predicted membrane protein (putative fusaric acid resistance) 10.48 ydcL c1856 Lipoprotein precursor 10.16 rnb c1757 Exoribonuclease II (mRNA degradation) 10.06 cfa c2055 Cyclopropane fatty acyl phospholipid synthase 9.98 ycgF c1606 EAL domain protein 9.69 fadD c2209 Long chain fatty acid-CoA...”

SG1516 putative lipoprotein from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Aligns to 30:214 / 222 (83.3%), covers 99.5% of PF11769, 198.9 bits

• Regulation of high-affinity iron acquisition homologues in the tsetse fly symbiont Sodalis glossinidius
  Runyen-Janecky, Journal of bacteriology 2010
  • “...acquisition systems. These genes, SG1538 (hemT) and SG1516 (sitA), are homologous to genes encoding periplasmic heme and iron/manganese transporters,...”
  • “...systems (5, 21, 39, 54), are present in Sodalis (SG1516 to SG1519). The sit and yfe genes have been found in numerous pathogenic bacteria, and among the...”

SF2457T_1008 DUF3313 domain-containing protein from Shigella flexneri 2a str. 2457T
Aligns to 26:210 / 218 (84.9%), covers 97.3% of PF11769, 193.4 bits

• Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations
  Maggiore, International journal of medical microbiology : IJMM 2016
  • “...localized proteins with at least 0.01% mass in Sf2a GMMA not found in Ss GMMA SF2457T_1008 OM lipo Uncharacterized lipoprotein ydcL E3XZ64_SHIFL 0.035 SF2457T_0155 OM lipo Lipoprotein E3XWR9_SHIFL 0.035 sitA PP Iron transport protein Q3Z1C5_SHISS 0.024 + SF2457T_3658 OM Antigen 43 E3Y656_SHIFL 0.014 * Present if...”

DVU0243 lipoprotein, putative from Desulfovibrio vulgaris Hildenborough
Aligns to 31:211 / 222 (81.5%), covers 99.5% of PF11769, 193.2 bits

• High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris
  Walian, Journal of proteome research 2012
  • “...Hypothetical protein Homodimer DVU0100 TonB-dependent receptor Monomer DVU0133 Hypothetical protein Multimer DVU0147 Lipoprotein, putative Homopentamer DVU0243 Lipoprotein, putative Homodimer DVU0249 Lipoprotein, putative Homodimer DVU0255 Hypothetical protein Multimer DVU0266 Hypothetical protein Homodimer DVU0273 Conserved hypothetical protein Homotrimer DVU0371 Conserved hypothetical protein Monomer, homodimer DVU0397 Rare lipoprotein A,...”

RS_RS12840 DUF3313 domain-containing protein from Ralstonia pseudosolanacearum GMI1000
Aligns to 29:215 / 220 (85.0%), covers 98.9% of PF11769, 190.7 bits

• Comparative Analysis of Ralstonia solanacearum Methylomes
  Erill, Frontiers in plant science 2017
  • “...different methylation states (Figure 5 ). The G T WW A C site upstream of RS_RS12840, a putative DUF3313 domain-containing lipoprotein, was non-methylated in both strains and overlapped the 35 region of a putative promoter. In contrast, the site upstream of RS_RS15735, a HipB-like transcriptional regulator,...”
  • “...sites, G T WW A C sites overlap the 35 region of a predicted lipoprotein (RS_RS12840) and a putative RelBE-like toxin-antitoxin (TA) system (RS_RS17560-RS_RS17555). This promoter region of this TA system is hemi-methylated in R. solanacearum GMI1000 and non-methylated in strain UY031, hinting at a differential...”

PA14_20600 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 28:212 / 224 (82.6%), covers 100.0% of PF11769, 188.8 bits

• Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence
  Panayidou, Scientific reports 2020
  • “...secretion of the ExoU cytotoxin 75 . Hypothetical proteins overexpressed in highly pathogenic species include: PA14_20600, a DUF3313 domain-containing protein (PFAM ID: PF11769), a domain defining a family of putative bacterial lipoproteins; PA14_04710, a 4Fe-4S ferredoxin that, like other ferredoxins, mediates electron transfer in a wide...”

PSYTB_15435 DUF3313 domain-containing protein from Pseudomonas amygdali pv. tabaci str. ATCC 11528
Aligns to 29:215 / 222 (84.2%), covers 99.5% of PF11769, 160.4 bits

• N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity in Pseudomonas syringae pathovar tabaci 11528
  Cheng, MicrobiologyOpen 2017
  • “...rod protein 9.29 PSYTB_15425 Flagellar basal body rod protein 10.23 PSYTB_15430 Flagellar Lring protein 10.56 PSYTB_15435 Flagellar Pring protein 11.43 PSYTB_15440 Flagellar rod assembly protein 11.26 PSYTB_15445 Flagellar hook protein 5.34 PSYTB_15455 Flagellar hookassociated protein 4.07 PSYTB_15485 Flagellar protein 2.40 PSYTB_15495 Flagellar protein 4.14 PSYTB_15500 Flagellar...”

U876_22720 DUF3313 domain-containing protein from Aeromonas hydrophila NJ-35
Aligns to 23:207 / 218 (84.9%), covers 93.5% of PF11769, 117.2 bits

• Tetrahymena thermophila Predation Enhances Environmental Adaptation of the Carp Pathogenic Strain Aeromonas hydrophila NJ-35
  Liu, Frontiers in cellular and infection microbiology 2018
  • “...receptor family protein; outer membrane receptor proteins CirA 9.306 U876_02480 ABC-type transport auxiliary lipoprotein 2.016 U876_22720 Putative lipoproteins 3.255 U876_11065 Slp Slp family outer membrane 2.010 U876_00470 LpsA Beta-1,4-galactosyltransferase LPS and lipooligoaccharide biosynthesis protein 2.497 U876_13435 SurA Surface antigen (outer membrane lipoprotein) 2.024 U876_14480 MalE Sugar...”

Or search for genetic data about PF11769 in the Fitness Browser