Family Search for PF11853 (DUF3373)

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PF11853 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SO4143 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 150:574 / 574 (74.0%), covers 99.8% of PF11853, 488.9 bits

• Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis
  Beg, Nucleic acids research 2012
  • “...ccoQ, ccoO, ccoN, nrdG, nrdD , SO2891, SO3054, SO3890 , nrfA, narQ, narP , SO4142, SO4143 , hupE, moaE, moaD, moaC, moaA, etfQ , SO4512 , fdhA, fdhB, fdhC, ctaG Cytochrome maturation, fumarate reductase, nitrate/nitrite reductase, Fe transport storage, adenylate cyclase, lactate transport/utilization, cytochrome oxidase, formate/NiFe...”

DBW_0838 DUF3373 domain-containing protein from Desulfuromonas sp. DDH964
Aligns to 143:569 / 569 (75.0%), covers 99.8% of PF11853, 466.6 bits

• Comparative insights into genome signatures of ferric iron oxide- and anode-stimulated Desulfuromonas spp. strains
  Guo, BMC genomics 2021
  • “...DTF_RS0116600 cbb 3 cytochrome c oxidase, subunit III AOP6_0462, AOP6_1193, AOP6_1768, AOP6_2692 BQ4888_RS04845, BQ4888_RS07140 DSOUD_0601 DBW_0838 DTF_RS0119470 cbb 3 cytochrome c oxidase, subunit III DSOUD_0719 cbb 3 cytochrome c oxidase, subunit III BQ4888_RS10570 DSOUD_0327, DSOUD_1618 DBW_3541 DTF_RS25165 cbb 3 cytochrome c oxidase, subunit III AOP6_1494 cbb...”

TC 1.B.60.1.1 / Q0P986 The outer membrane, monomeric, large conductance, cation-selective Omp50 porin from Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
YP_002344561 outer membrane protein from Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Cj1170c outer membrane protein from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 102:472 / 473 (78.4%), covers 89.0% of PF11853, 127.6 bits

• substrates: cations
  tcdb comment: of 453 aas (Bolla et al. 2000)
• The omp50 gene is transcriptionally controlled by a temperature-dependent mechanism conserved among thermophilic Campylobacter species.
  Dedieu, Research in microbiology 2008 (PubMed)
  • GeneRIF: Omp50 expression in C. jejuni was temperature-dependent, but independent of growth phase or medium viscosity.
• A two-hit epistasis model prevents core genome disharmony in recombining bacteria
  Taylor, 2021
• Genome-Wide Identification of Host-Segregating Epidemiological Markers for Source Attribution in Campylobacter jejuni
  Thépault, Applied and environmental microbiology 2017
  • “...depletion of the hypothetical protein Cj1169c and the protein Cj1170c (OMP50) in C. jejuni mutants has been shown to result in reduced colonization of chicken...”
• Transcriptomic analysis of Campylobacter jejuni NCTC 11168 in response to epinephrine and norepinephrine
  Xu, Frontiers in microbiology 2015
  • “...cis-trans isomerase Ppi ( Cj1171c ), a 50 kDa outer membrane protein precursor Omp50 ( Cj1170c ) and a putative periplasmic protein Cj1169c were all up-regulated by Epi or NE. In contrast, all the 4 genes were down-regulated in iron-replete medium (Palyada et al., 2004 ;...”
• Adaptive mechanisms of Campylobacter jejuni to erythromycin treatment
  Xia, BMC microbiology 2013
  • “...growth under high-level oxygen. Another notable finding is the consistent up-regulation of cj1169c-cj1170c, of which cj1170c encodes a known phosphokinase, an important regulatory protein in C. jejuni . Mutation of the cj1169c-cj1170c rendered C. jejuni less tolerant to atmospheric oxygen and reduced Campylobacter colonization and transmission...”
  • “...genes are involved in motility/chemotaxis, tryptophan synthesis, branched-chain amino acid transport, and protein phosphorylation ( cj1170c) . A two-component sensor kinase ( cj1226c ) was down-regulated under both inhibitory and sub-inhibitory treatments (Table 3 ). To confirm differential expression detected by microarray, qRT-PCR was conducted on...”
• Mutational and transcriptomic changes involved in the development of macrolide resistance in Campylobacter jejuni
  Hao, Antimicrobial agents and chemotherapy 2013
  • “...cluster includes genes encoding membrane proteins (Cj1170c, Cj0378c, and Cj0124c), surface polysaccharides (Cj1425c, Cj1430c, and lpxB), periplasmic proteins...”
• Insights into the mode of action of benzyl isothiocyanate on Campylobacter jejuni
  Dufour, Applied and environmental microbiology 2013
  • “...cft chuA chuC chuD Cj0391c Cj0628 Cj0700 Cj0772c Cj0937 Cj1170c Cj1324 Cj1383c Cj1429c Cj1516 Cj1564 Cj1725 fabF flaC nrdA peb4 purB thiC a Gene product and/or...”
• Hyperosmotic stress response of Campylobacter jejuni
  Cameron, Journal of bacteriology 2012
  • “...export system peb2 omp50 kpsM cj0561c cj0778 cj1170c cj1448c 5.4 2.1 Amino acid biosynthesis Glutamate synthase Putative anthranilate synthase component I...”
  • “...Gene Locus tag 15 min 1.5 h peb4 omp50 cj0596 cj1170c 2.1 2.6 2.9 lctP kdpA kdpB peb1A cj0076c cj0676 cj0677 cj0921c cjaB cjaA putP sdaC cj0981c cj0982c cj1502c...”
• Mucosal reactive oxygen species decrease virulence by disrupting Campylobacter jejuni phosphotyrosine signaling
  Corcionivoschi, Cell host & microbe 2012
  • “...2007 ). Using a bioinformatics approach based on homology to particular sequence motifs, we identified Cj1170c, an outer membrane protein, previously designated OMP50 ( Bolla et al., 2000 ), as candidate BY-kinase. Based on its molecular weight we hypothesized that autophosphorylated OMP50 was represented by the...”
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omp50 / CAE46532.1 50 kDa outer membrane protein from Campylobacter jejuni (see paper)
Aligns to 102:471 / 472 (78.4%), covers 89.0% of PF11853, 126.1 bits

CJJ81176_1185 hypothetical protein from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 102:465 / 466 (78.1%), covers 89.0% of PF11853, 124.7 bits

• Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System
  Liu, mBio 2018
  • “...2.88E02 Hypothetical proteins CJJ81176_1006 CJJ81176_1006 Hypothetical protein 2.3 1.43E03 CJJ81176_1184 CJJ81176_1184 Hypothetical protein 2.5 3.58E04 CJJ81176_1185 CJJ81176_1185 Hypothetical protein 2.6 9.42E04 CJJ81176_1657 CJJ81176_1657 Hypothetical protein 2.6 5.54E31 2.7 1.72E32 C.jejuni exposed to human fecal extracts versus chicken cecal extract had higher expression of iron uptake and...”
• Proteomic and genomic analysis reveals novel Campylobacter jejuni outer membrane proteins and potential heterogeneity
  Watson, EuPA open proteomics 2014
  • “...number of proteins with known roles in small molecule transport including the porins PorA and CJJ81176_1185 (Omp50), ABC transporter components PEB1, CjaA and CjaC and the multi drug efflux pump component CmeC. Two iron acquisition proteins ChuA and CfrB were also identified as well as the...”
  • “...sequence similarity with proteins present within both strains of C. coli although the lipoprotein CJJ81176_0125, CJJ81176_1185 (Omp50), the hypothetical protein CJJ81176_0127 and the serine protease CJJ81176_1367 are absent. Several OM proteins of strain 81-176 were revealed to have high sequence similarity (up to 91%) with C....”
• Identification of Campylobacter jejuni proteins recognized by maternal antibodies of chickens
  Shoaf-Sweeney, Applied and environmental microbiology 2008
  • “...FlaB FlaA CmeC 59.5 59.7 52.6 55.4 FlaB FlaA CJJ81176_1185 CmeC 59.5 59.7 46.1 59.5 59.7 43.5 40.0 FlaB FlaA CJJ81176_1295 FlaB FlaA CJJ81176_0128 CmeA 11 59.5...”

omp50 / CAE46533.1 50 kDa outer membrane protein from Campylobacter jejuni (see paper)
Aligns to 102:481 / 482 (78.8%), covers 91.4% of PF11853, 124.0 bits

omp50 / CAE46535.1 50 kDa outer membrane protein from Campylobacter lari (see paper)
Aligns to 102:482 / 483 (78.9%), covers 89.0% of PF11853, 122.9 bits

omp50 / CAE46534.1 50 kDa outer membrane protein from Campylobacter lari (see paper)
Aligns to 102:482 / 483 (78.9%), covers 89.0% of PF11853, 122.0 bits

CJE1304 hypothetical protein from Campylobacter jejuni RM1221
Aligns to 102:475 / 476 (78.6%), covers 89.0% of PF11853, 121.8 bits

• Unique features of a highly pathogenic Campylobacter jejuni strain
  Hofreuter, Infection and immunity 2006
  • “...81-176 is very closely related to corresponding protein CJE1304 of C. jejuni RM1221 (94% Downloaded from http://iai.asm.org/ on February 10, 2017 by University...”

omp50 / CAE46531.1 50 kDa outer membrane protein from Campylobacter jejuni (see paper)
Aligns to 102:471 / 472 (78.4%), covers 88.5% of PF11853, 121.2 bits

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