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Family Search for PF11879 (DUF3399)

PF11879 hits 24 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

KCND2_RAT / Q63881 A-type voltage-gated potassium channel KCND2; Potassium voltage-gated channel subfamily D member 2; RK5; Shal1; Voltage-gated potassium channel subunit Kv4.2 from Rattus norvegicus (Rat) (see 46 papers)
Aligns to 470:546 / 630 (12.2%), covers 97.4% of PF11879, 126.7 bits

KCND2_RABIT / P59995 A-type voltage-gated potassium channel KCND2; Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 470:546 / 630 (12.2%), covers 97.4% of PF11879, 126.7 bits

NP_113918 potassium voltage-gated channel subfamily D member 2 from Rattus norvegicus
Aligns to 470:546 / 630 (12.2%), covers 97.4% of PF11879, 126.7 bits

KCND2_HUMAN / Q9NZV8 A-type voltage-gated potassium channel KCND2; Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Homo sapiens (Human) (see 23 papers)
TC 1.A.1.2.5 / Q9NZV8 Voltage-gated K+ channel subfamily D, member 2, Kv4.2 or KCND2, in neurons and muscle; forms complexes with auxiliary subunits and scaffolding proteins via its N-terminus, influencing trafficking, temperature-sensitivity and gating (Radicke et al. 2013).These subunits are (1) dipeptidyl-peptidase-like type II transmembrane proteins typified by DPPX-S (e.g., protein 6, P42658; 865 aas), and (2) cytoplasmic Ca2+ binding proteins known as K+ channel interacting proteins (KChIPs; TC#5.B.1.1.7; Q6PIL6) from Homo sapiens (Human) (see 17 papers)
KCND2 / RF|NP_036413.1 potassium voltage-gated channel subfamily D member 2 from Homo sapiens (see paper)
NP_036413 potassium voltage-gated channel subfamily D member 2 precursor from Homo sapiens
Aligns to 470:546 / 630 (12.2%), covers 97.4% of PF11879, 126.7 bits

KCND2_MOUSE / Q9Z0V2 A-type voltage-gated potassium channel KCND2; Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Mus musculus (Mouse) (see 22 papers)
NP_062671 potassium voltage-gated channel subfamily D member 2 precursor from Mus musculus
Aligns to 470:546 / 630 (12.2%), covers 97.4% of PF11879, 126.6 bits

XP_015132111 potassium voltage-gated channel subfamily D member 2 isoform X1 from Gallus gallus
Aligns to 472:548 / 632 (12.2%), covers 96.1% of PF11879, 123.4 bits

KCND3_RAT / Q62897 A-type voltage-gated potassium channel KCND3; Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Rattus norvegicus (Rat) (see 10 papers)
Aligns to 468:563 / 655 (14.7%), covers 97.4% of PF11879, 122.2 bits

KCND3_MOUSE / Q9Z0V1 A-type voltage-gated potassium channel KCND3; Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Mus musculus (Mouse) (see 3 papers)
Aligns to 468:563 / 655 (14.7%), covers 97.4% of PF11879, 122.2 bits

NP_001257891 potassium voltage-gated channel subfamily D member 3 isoform 1 from Rattus norvegicus
Aligns to 468:563 / 655 (14.7%), covers 97.4% of PF11879, 122.2 bits

KCND3_RABIT / Q9TTT5 A-type voltage-gated potassium channel KCND3; Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 468:563 / 655 (14.7%), covers 97.4% of PF11879, 122.0 bits

KCND3_HUMAN / Q9UK17 A-type voltage-gated potassium channel KCND3; Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Homo sapiens (Human) (see 13 papers)
TC 1.A.1.2.19 / Q9UK17 The voltage-gated K+ channel subfamily D member 3, KCND3 or Kv4.3 from Homo sapiens
NP_004971 potassium voltage-gated channel subfamily D member 3 isoform 1 from Homo sapiens
Aligns to 468:563 / 655 (14.7%), covers 97.4% of PF11879, 121.9 bits

XP_005630924 potassium voltage-gated channel subfamily D member 3 isoform X1 from Canis lupus familiaris
Aligns to 468:563 / 679 (14.1%), covers 97.4% of PF11879, 121.9 bits

XP_018100233 potassium channel, voltage gated Shal related subfamily D, member 3 L homeolog isoform X1 from Xenopus laevis
Aligns to 468:563 / 653 (14.7%), covers 97.4% of PF11879, 117.1 bits

KCND1_RABIT / P59994 A-type voltage-gated potassium channel KCND1; Potassium voltage-gated channel subfamily D member 1; Voltage-gated potassium channel subunit Kv4.1 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 470:550 / 647 (12.5%), covers 97.4% of PF11879, 109.1 bits

XP_002719951 potassium voltage-gated channel subfamily D member 1 from Oryctolagus cuniculus
Aligns to 470:550 / 647 (12.5%), covers 97.4% of PF11879, 109.1 bits

KCND1_HUMAN / Q9NSA2 A-type voltage-gated potassium channel KCND1; Potassium voltage-gated channel subfamily D member 1; Shal-type potassium channel KCND1; Voltage-gated potassium channel subunit Kv4.1 from Homo sapiens (Human) (see 2 papers)
NP_004970 potassium voltage-gated channel subfamily D member 1 precursor from Homo sapiens
Aligns to 470:550 / 647 (12.5%), covers 97.4% of PF11879, 107.3 bits

KCND1_MOUSE / Q03719 A-type voltage-gated potassium channel KCND1; Potassium voltage-gated channel subfamily D member 1; Voltage-gated potassium channel subunit Kv4.1; mShal from Mus musculus (Mouse) (see 4 papers)
NP_032449 potassium voltage-gated channel subfamily D member 1 precursor from Mus musculus
Aligns to 470:550 / 651 (12.4%), covers 97.4% of PF11879, 105.4 bits

NP_001099218 potassium voltage-gated channel subfamily D member 1 precursor from Rattus norvegicus
Aligns to 470:550 / 650 (12.5%), covers 97.4% of PF11879, 104.5 bits

KCNAL_DROME / P17971 Potassium voltage-gated channel protein Shal; Shaker cognate l; Shal2 from Drosophila melanogaster (Fruit fly) (see paper)
NP_001097646 shaker cognate l, isoform B from Drosophila melanogaster
Aligns to 470:546 / 571 (13.5%), covers 86.8% of PF11879, 65.5 bits

7ukhA / Q9NZV8 Human kv4.2-kchip2-dpp6 channel complex in an open state, intracellular region (see paper)
Aligns to 176:203 / 203 (13.8%), covers 35.5% of PF11879, 52.6 bits

TC 1.A.1.2.21 / Q95XD1 Shal (SHL-1, Kv4) K+ channels of 578 aas and 6 TMSs are the predominant transient outward current in C. elegans muscle. SHL-1 expression occurs in a subset of neurons, body wall muscle and in male-specific diagonal muscles (Fawcett et al. 2006) and control the excitability of neurons and cardiac myocytes by conducting rapidly activating-inactivating currents. Activity is modulated by three K+ channel interacting (KChIP) soluble auxiliary subunits, NCS-4, NCS-5, and NCS-7. All three ceKChIPs alter electrical characteristics of SHL-1 currents by slowing down inactivation kinetics and shifting voltage dependence of activation to more hyperpolarizing potentials. Native SHL-1 current is completely abolished in cultured myocytes of Triple KO worms in which all three KChIP genes are deleted from Caenorhabditis elegans
Aligns to 471:543 / 578 (12.6%), covers 86.8% of PF11879, 48.1 bits

7e8eD / Q9NZV8 Cryoem structure of human kv4.2-dpp6s-kchip1 complex, transmembrane and intracellular region (see paper)
Aligns to 434:459 / 459 (5.7%), covers 32.9% of PF11879, 47.4 bits

TC 1.A.1.2.3 / P17971 Voltage-sensitive fast transient outward current K+ channel in neurons and muscle of flies and worms from Drosophila melanogaster (Fruit fly) (see 4 papers)
Shal / GB|ABC86265.1 potassium voltage-gated channel protein Shal from Drosophila melanogaster (see paper)
Aligns to 470:490 / 490 (4.3%), covers 25.0% of PF11879, 31.1 bits

XP_026693459 potassium voltage-gated channel protein Shal from Ciona intestinalis
Aligns to 475:569 / 800 (11.9%), covers 69.7% of PF11879, 26.7 bits

Or search for genetic data about PF11879 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory