Family Search for PF11937 (DUF3455)

PF11937 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CH_124165 malate dehydrogenase from Magnaporthe grisea 70-15 (see paper)
Aligns to 81:256 / 263 (66.9%), covers 98.7% of PF11937, 152.6 bits

Afu2g13800 malate dehydrogenase from Aspergillus fumigatus Af293
Aligns to 66:251 / 251 (74.1%), covers 100.0% of PF11937, 147.7 bits

• Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter
  Barker, BMC genomics 2012
  • “...transcripts for fumarate reductase OsmA (Afu8g05530), phosphoenolpyruvate carboxykinase AcuF (Afu6g07720), and putative malate dehydrogenase homologs (Afu2g13800 and Afu7g05740) were reduced in response to hypoxia. These transcripts are key factors in the reductive branch of the TCA cycle, which in some organisms such as Mycobacterium tuberculosis are...”

TERG_07011 uncharacterized protein from Trichophyton rubrum CBS 118892
Aligns to 69:246 / 246 (72.4%), covers 100.0% of PF11937, 141.1 bits

• The Transcriptional Profile of Trichophyton rubrum Co-Cultured with Human Keratinocytes Shows New Insights about Gene Modulation by Terbinafine
  Petrucelli, Pathogens (Basel, Switzerland) 2019
  • “...TERG_03105 3.16 Hypothetical protein - TERG_07234 2.76 Hypothetical protein - TERG_04164 2.60 Hypothetical protein - TERG_07011 2.58 Hypothetical protein Arthroderma benhamiae CBS 112371 conserved fungal protein (800 nt) TERG_12474 2.48 Hypothetical protein Trichophyton tonsurans CBS 112818 ABC-transporter (2471 nt) TERG_06276 2.47 Chromate ion transporter Trichophyton tonsurans...”

SS1G_05337 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
Aligns to 49:223 / 223 (78.5%), covers 98.7% of PF11937, 135.3 bits

• Characterization of the Sclerotinia sclerotiorum cell wall proteome
  Liu, Molecular plant pathology 2016
  • “...Putative cell wall protein SS1G_08907 156048352 Yes (1) No Yes (1) Putative cell wall protein SS1G_05337 156055970 Yes (2) Yes (2) Yes (2) Putative cell wall protein with FGGAP repeat SS1G_14133 156031050 Yes (2) No No Putative cell wall protein SS1G_08110 156051043 Yes (1) No Yes...”

CHL79_03905 DUF3455 domain-containing protein from Delftia acidovorans
Aligns to 41:180 / 182 (76.9%), covers 100.0% of PF11937, 131.1 bits

• Transcriptomics reveal core activities of the plant growth-promoting bacterium Delftia acidovorans RAY209 during interaction with canola and soybean roots
  Suchan, Microbial genomics 2020
  • “...hypothetical genes (sigDE; P adj <0.05) (Supplementary Excel File). In another case, the DUF3455-containing genes CHL79_03905 and CHL79_25525 were strongly increased in differential expression in RAY209 cells isolated from soybean roots at day 7, revealing 20-fold higher expression compared to cells isolated from day 2 roots...”

PP3007 hypothetical protein from Pseudomonas putida KT2440
PP_3007 DUF3455 domain-containing protein from Pseudomonas putida KT2440
Aligns to 34:173 / 175 (80.0%), covers 99.4% of PF11937, 122.9 bits

• The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solvents
  Duque, Journal of bacteriology 2007
  • “...PP3005 is an inner membrane protein, whereas the PP3007 protein is periplasmic. A nonpolar rpoT mutant was generated by homologous recombination, and survival...”
  • “...v1.4f5 (34) by using a window size of 9 (for PP3007) or 19 (for PP3005). RESULTS The gene that encodes ECF-Pp12 is clustered with genes encoding PP3005 and...”
• Development of genetic tools for heterologous protein expression in a pentose-utilizing environmental isolate of Pseudomonas putida
  Gauttam, Microbial biotechnology 2023
  • “...(JPUB_020328) P. putida KT2440 (clone 1) carrying pW17 for landing pad integration at Locus tag PP_3007 that encodes a hypothetical protein, Kan R This study P. putida PP2M710 (JPUB_020330) P. putida M2 carrying pRGPDuo6sfGFPCymR RBS0; Kan R This study P. putida PP2M711 (JPUB_020332) P. putida M2...”
  • “...in the presence of kanamycin selection marker. PacBio sequencing identified pW17 integration at locus tag PP_3007, which encodes a hypothetical protein in KT2440 (PPK706). PacBio sequencing results for M2 (PP2M729) identified multiple sequences and some of the sequences aligned to pW17 confirming the integration of LP...”
• Genome-Wide Analysis of Targets for Post-Transcriptional Regulation by Rsm Proteins in Pseudomonas putida
  Huertas-Rosales, Frontiers in molecular biosciences 2021
  • “...Repeats may bind carbohydrates PP_2219 Hypothetical protein PP_2345 Hypothetical protein PP_2396 Hypothetical protein Periplasmic protein PP_3007 Hypothetical protein PP_3010 Hypothetical protein Putative lipoprotein PP_3130 Hypothetical protein Glycoside hydrolase family (EPS turnover?) PP_3580 Hypothetical protein PP_3662 Hypothetical protein Nucleotide 5-monophosphate nucleosidase YgdH-like superfamily PP_3901 Hypothetical protein Predicted...”
• Transcriptome Changes in Pseudomonas putida KT2440 during Medium-Chain-Length Polyhydroxyalkanoate Synthesis Induced by Nitrogen Limitation
  Dabrowska, International journal of molecular sciences 2020
  • “...Other genes code flagellar hook protein (FlgE), transglutaminase (PP_2686), and undetermined, hypothetical proteins (PP_2687, PP_2688, PP_3007, and PP_4331). 2.4. Validation of Illumina Sequence Data Using qRT-PCR To confirm the data obtained by RNAseq, the expression quantities of the most important genes for mcl-PHAs synthesis ( phaC1...”
  • “...reductase large subunit 13.37 7.48 5.21 nd PP_1706 nirD nitrite reductase 17.03 10.49 6.57 nd PP_3007 nd hypothetical protein 7.68 5.13 7.95 nd PP_4331 nd hypothetical protein 6.33 3.84 6.71 nd PP_4387 nd hypothetical protein 13.22 3.53 11.64 nd PP_4631 nd hypothetical protein 7.97 8.95 7.12...”

PSPTO_5175 hypothetical protein from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 36:175 / 177 (79.1%), covers 99.4% of PF11937, 118.0 bits

• Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality
  McMillan, Applied and environmental microbiology 2023 (secret)

CHL79_25525 DUF3455 domain-containing protein from Delftia acidovorans
Aligns to 48:188 / 190 (74.2%), covers 100.0% of PF11937, 115.9 bits

• Transcriptomics reveal core activities of the plant growth-promoting bacterium Delftia acidovorans RAY209 during interaction with canola and soybean roots
  Suchan, Microbial genomics 2020
  • “...(sigDE; P adj <0.05) (Supplementary Excel File). In another case, the DUF3455-containing genes CHL79_03905 and CHL79_25525 were strongly increased in differential expression in RAY209 cells isolated from soybean roots at day 7, revealing 20-fold higher expression compared to cells isolated from day 2 roots ( P...”

SMAC_05496 uncharacterized protein from Sordaria macrospora
Aligns to 44:255 / 256 (82.8%), covers 98.7% of PF11937, 110.1 bits

• Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development
  Teichert, BMC genomics 2012
  • “...-- extracellular SMAC_03636 loosenin ( Bjerkandera adusta ) riboflavin aldehyde-forming enzyme extracellular SMAC_05143 -- nuclear SMAC_05496 -- extracellular SMAC_05710 MoFLP1 ( M. grisea ) fasciclin extracellular SMAC_05970 ppg1 pheromone precursor extracellular SMAC_09568 -- cytosolic SMAC_12697 ppg2 pheromone precursor extracellular Putative functions were predicted with Blast2GO [...”

CNBG_4371 uncharacterized protein from Cryptococcus deuterogattii R265
Aligns to 14:164 / 165 (91.5%), covers 83.9% of PF11937, 57.5 bits

• Centromere deletion in Cryptococcus deuterogattii leads to neocentromere formation and chromosome fusions
  Schotanus, eLife 2020
  • “...High osmolarity signaling protein ( SHO1 ) CNBG_4373 100 Hypothetical protein CNBG_4372 100 Hypothetical protein CNBG_4371 100 Hypothetical protein CNBG_4370 100 In three of the independent cen9 mutants ( cen9 -B , -C and -E ), neocentromeres formed at the same chromosomal location ( Figure 1A...”

Or search for genetic data about PF11937 in the Fitness Browser