Family Search for PF11937 (DUF3455)
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Running HMMer for PF11937
PF11937 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
CH_124165 malate dehydrogenase from Magnaporthe grisea 70-15 (see paper)
Aligns to 81:256 / 263 (66.9%), covers 98.7% of PF11937, 152.6 bits
Afu2g13800 malate dehydrogenase from Aspergillus fumigatus Af293
Aligns to 66:251 / 251 (74.1%), covers 100.0% of PF11937, 147.7 bits
TERG_07011 uncharacterized protein from Trichophyton rubrum CBS 118892
Aligns to 69:246 / 246 (72.4%), covers 100.0% of PF11937, 141.1 bits
SS1G_05337 hypothetical protein from Sclerotinia sclerotiorum 1980 UF-70
Aligns to 49:223 / 223 (78.5%), covers 98.7% of PF11937, 135.3 bits
- Characterization of the Sclerotinia sclerotiorum cell wall proteome
Liu, Molecular plant pathology 2016 - “...Putative cell wall protein SS1G_08907 156048352 Yes (1) No Yes (1) Putative cell wall protein SS1G_05337 156055970 Yes (2) Yes (2) Yes (2) Putative cell wall protein with FGGAP repeat SS1G_14133 156031050 Yes (2) No No Putative cell wall protein SS1G_08110 156051043 Yes (1) No Yes...”
CHL79_03905 DUF3455 domain-containing protein from Delftia acidovorans
Aligns to 41:180 / 182 (76.9%), covers 100.0% of PF11937, 131.1 bits
PP_3007 DUF3455 domain-containing protein from Pseudomonas putida KT2440
PP3007 hypothetical protein from Pseudomonas putida KT2440
Aligns to 34:173 / 175 (80.0%), covers 99.4% of PF11937, 122.9 bits
- Development of genetic tools for heterologous protein expression in a pentose-utilizing environmental isolate of Pseudomonas putida
Gauttam, Microbial biotechnology 2023 - “...(JPUB_020328) P. putida KT2440 (clone 1) carrying pW17 for landing pad integration at Locus tag PP_3007 that encodes a hypothetical protein, Kan R This study P. putida PP2M710 (JPUB_020330) P. putida M2 carrying pRGPDuo6sfGFPCymR RBS0; Kan R This study P. putida PP2M711 (JPUB_020332) P. putida M2...”
- “...in the presence of kanamycin selection marker. PacBio sequencing identified pW17 integration at locus tag PP_3007, which encodes a hypothetical protein in KT2440 (PPK706). PacBio sequencing results for M2 (PP2M729) identified multiple sequences and some of the sequences aligned to pW17 confirming the integration of LP...”
- Genome-Wide Analysis of Targets for Post-Transcriptional Regulation by Rsm Proteins in Pseudomonas putida
Huertas-Rosales, Frontiers in molecular biosciences 2021 - “...Repeats may bind carbohydrates PP_2219 Hypothetical protein PP_2345 Hypothetical protein PP_2396 Hypothetical protein Periplasmic protein PP_3007 Hypothetical protein PP_3010 Hypothetical protein Putative lipoprotein PP_3130 Hypothetical protein Glycoside hydrolase family (EPS turnover?) PP_3580 Hypothetical protein PP_3662 Hypothetical protein Nucleotide 5-monophosphate nucleosidase YgdH-like superfamily PP_3901 Hypothetical protein Predicted...”
- Transcriptome Changes in Pseudomonas putida KT2440 during Medium-Chain-Length Polyhydroxyalkanoate Synthesis Induced by Nitrogen Limitation
Dabrowska, International journal of molecular sciences 2020 - “...Other genes code flagellar hook protein (FlgE), transglutaminase (PP_2686), and undetermined, hypothetical proteins (PP_2687, PP_2688, PP_3007, and PP_4331). 2.4. Validation of Illumina Sequence Data Using qRT-PCR To confirm the data obtained by RNAseq, the expression quantities of the most important genes for mcl-PHAs synthesis ( phaC1...”
- “...reductase large subunit 13.37 7.48 5.21 nd PP_1706 nirD nitrite reductase 17.03 10.49 6.57 nd PP_3007 nd hypothetical protein 7.68 5.13 7.95 nd PP_4331 nd hypothetical protein 6.33 3.84 6.71 nd PP_4387 nd hypothetical protein 13.22 3.53 11.64 nd PP_4631 nd hypothetical protein 7.97 8.95 7.12...”
- The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solvents
Duque, Journal of bacteriology 2007 - “...PP3005 is an inner membrane protein, whereas the PP3007 protein is periplasmic. A nonpolar rpoT mutant was generated by homologous recombination, and survival...”
- “...v1.4f5 (34) by using a window size of 9 (for PP3007) or 19 (for PP3005). RESULTS The gene that encodes ECF-Pp12 is clustered with genes encoding PP3005 and...”
PSPTO_5175 hypothetical protein from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 36:175 / 177 (79.1%), covers 99.4% of PF11937, 118.0 bits
CHL79_25525 DUF3455 domain-containing protein from Delftia acidovorans
Aligns to 48:188 / 190 (74.2%), covers 100.0% of PF11937, 115.9 bits
SMAC_05496 uncharacterized protein from Sordaria macrospora k-hell
Aligns to 44:255 / 256 (82.8%), covers 98.7% of PF11937, 110.1 bits
Or search for genetic data about PF11937 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory