Family Search for PF11944 (DUF3461)

PF11944 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ESA_03178 DUF3461 family protein from Cronobacter sakazakii ATCC BAA-894
ESA_03178 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
Aligns to 1:125 / 129 (96.9%), covers 100.0% of PF11944, 189.2 bits

• Comparative Outer Membrane Protein Analysis of High and Low-Invasive Strains of Cronobacter malonaticus
  Aldubyan, Frontiers in microbiology 2017
  • “...38.35 Uncharacterized protein x x x x x x YciE/YciF family protein 19.06 UPF0325 protein ESA_03178 x x x x x Hypothetical protein 15.06 60 kDa chaperonin (GroEL) x x x x x x x x 57.18 10 kDa chaperonin (GroS) x x x x x...”

YPO1040 conserved hypothetical protein from Yersinia pestis CO92
YPTB3007 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 1:125 / 129 (96.9%), covers 100.0% of PF11944, 187.5 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...conserved hypothetical protein 0.639 (0.027) YPTB2954 (asr) YPO2652 putative acid shock protein 1.815 (0.033) YPTB3007 YPO1040 conserved hypothetical protein 0.728 (0.024) 0.73 (0.025) YPTB3039 YPO0791 hypothetical protein 0.545 (0.007) YPTB3041 (ygeD) YPO0792 putative membrane protein 0.617 (0.015) YPTB3071 YPO0822 putative exported protein 0.51 (0.002) YPTB3111 YPO0867...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPO2653 conserved hypothetical protein 0.639 (0.027) YPTB2954 (asr) YPO2652 putative acid shock protein 1.815 (0.033) YPTB3007 YPO1040 conserved hypothetical protein 0.728 (0.024) 0.73 (0.025) YPTB3039 YPO0791 hypothetical protein 0.545 (0.007) YPTB3041 (ygeD) YPO0792 putative membrane protein 0.617 (0.015) YPTB3071 YPO0822 putative exported protein 0.51 (0.002) YPTB3111...”

A6T4W7 UPF0325 protein KPN78578_01770 from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Aligns to 1:125 / 128 (97.7%), covers 100.0% of PF11944, 187.0 bits

• Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production
  Sukumaran, BMC microbiology 2021
  • “...-3.239 cspC Cold shock protein A6T4Y0 2.361 hlpA Periplasmic molecular chaperone for outer membrane proteins A6T4W7 2.743 KPN78578_01770 UPF0325 protein A6T653 3.185 KPN_00624 Putative periplasmic binding protein/LacI transcriptional regulator A6T592 3.396 tauA Taurine transport protein A6TAI1 6.877 ihfA Integration host factor subunit alpha A6TFP8 14.425 rpoZ...”

YaeH / b0163 DUF3461 domain-containing protein YaeH from Escherichia coli K-12 substr. MG1655
Z0175 putative structural protein from Escherichia coli O157:H7 EDL933
P62768 UPF0325 protein YaeH from Escherichia coli (strain K12)
Q0TLG8 UPF0325 protein YaeH from Escherichia coli O6:K15:H31 (strain 536 / UPEC)
b0163 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:125 / 128 (97.7%), covers 100.0% of PF11944, 186.4 bits

• Characterization of the universal stress protein F from atypical enteropathogenic Escherichia coli and its prevalence in Enterobacteriaceae
  de, Protein science : a publication of the Protein Society 2016
  • “...phase protection protein, DNAbinding transcriptional dual regulator HNS, ferritin, galactosebinding transport protein, the hypothetical proteins Z0175, Z2335 and Z3776, KHG/KDPG aldolase, universal stress protein A and D, stringent starvation protein A, putative transport protein, a protein of the fucose operon, peptidase E; also a putative filament...”
• The T4 phage DNA mimic protein Arn inhibits the DNA binding activity of the bacterial histone-like protein H-NS
  Ho, The Journal of biological chemistry 2014
  • “...1 UPF0325 protein YaeH DNA-binding protein H-NS P62768 P0ACF8 4,007/72 2,766/55 96 89 Band 2 Galactitol-1-phosphate 5-dehydrogenase PTS system mannose-specific...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...P36879 YadK YadR YaeC YaeH YaeT P37016 P0ACC3 Q9F577 P62768 P0A940 YahK P75691 YajD YajG YajO YajQ YbbL P0AAQ2 P0ADA5 P77735 P0A8E7 P77279 YbbN YbdQ P77395 YbeZ...”
• Identification of Functional Interactome of Colistin Resistance Protein MCR-1 in Escherichia coli
  Li, Frontiers in microbiology 2020
  • “...peptidyl-prolyl cis-trans isomerase FkpA 28,864 fkpA 23 P0ADS2 Cell division protein ZapA 12,643 zapA 24 Q0TLG8 UPF0325 protein YaeH 15,144 yaeH 25 P0A7T3 30S ribosomal protein S16 9,185 rpsP 26 P69428 Sec-independent protein translocase protein TatA 9,658 tatA 27 P0AG30 Transcription termination factor Rho 47,032 rho...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...uxaB xseB xylE yfiB ygjG yhaH yihP b0058 b0105 b0119 b0163 b0233 b0286 b0288 b3939 b3938 b2942 b3828 b3856 b0635 b2113 b3291 b4219 b3161 b0085 b0109 b0678 b1223...”
  • “...b3495 b1521 b0422 b4031 b2605 b3073 b3103 b3877 b0058 b0105 b0119 b0163 b0233 b0286 b0288 Fold induction 2.1 4.7 4.3 2.8 2.2 2.3 3.4 3.8 2.7 20.6 2.4 4.2 2.6...”
• DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
  Zheng, Journal of bacteriology 2001
  • “...yaeH manX ycgK b1020 b1165 b1498 b3917 b1376 b2425 b0163 b1817 b1178 14 14 14 12 12 12 12 11 10 Functionb Function unknown Chaperone, heat-inducible protein...”

D083_3591 DUF3461 family protein from Dickeya solani RNS 08.23.3.1.A
Aligns to 1:125 / 128 (97.7%), covers 100.0% of PF11944, 184.7 bits

• Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani
  Figaj, International journal of molecular sciences 2020
  • “...2.70 0.43 A0A2K8VYF1_9GAMM Epimerase domain-containing protein 2.34 0.37 0.18 0.75 Others Downregulated A0A2K8W376_9GAMM UPF0325 protein D083_3591 0.36 0.45 A0A2K8W2W2_9GAMM IncI1 plasmid conjugative transfer protein TraF 0.30 0.53 0.26 0.58 A0A2K8W4R1_9GAMM Uncharacterized protein 0.45 0.34 0.33 0.48 A0A2K8VTN2_9GAMM Uncharacterized protein 0.41 0.38 A0A2K8VV11_9GAMM Major outer membrane lipoprotein...”

STM0211 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 1:125 / 128 (97.7%), covers 100.0% of PF11944, 184.5 bits

• Computational prediction of type III and IV secreted effectors in gram-negative bacteria
  McDermott, Infection and immunity 2011
  • “...PSLT037 STM0082 STM3762 STM1087 STM1599 STM1809 STM1513 STM1633 STM0211 STM1121 STM3392 STM4082 STM3595 STM1548 a SIEVE EffectiveT3 Lower and Schneider 41 CyaA...”

VC2264 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 11:136 / 137 (92.0%), covers 100.0% of PF11944, 179.0 bits

• Mining regulatory 5'UTRs from cDNA deep sequencing datasets
  Livny, Nucleic acids research 2010
  • “...Hypothetical protein 62 VC1613 Hypothetical protein 63 VC1891 Hypothetical protein 64 VC2002 Hypothetical protein 65 VC2264 Hypothetical protein 66 VC2647 Hypothetical protein 67 VCA0327 Hypothetical protein 68 VCA0363 Hypothetical protein 69 VCA0743 Hypothetical protein Asterisk denotes candidates containing or directly upstream of a putative transcription terminator....”

Or search for genetic data about PF11944 in the Fitness Browser