Family Search for PF11961 (DUF3475)

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PF11961 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT5G04550 hypothetical protein from Arabidopsis thaliana
Aligns to 28:84 / 599 (9.5%), covers 100.0% of PF11961, 92.3 bits

• Protein Phosphorylation Changes During Systemic Acquired Resistance in Arabidopsis thaliana
  Zhou, Frontiers in plant science 2021
  • “...14 (IQD14), eukaryotic translation initiation factor isoform 4G-1 (EIF4G1), TSS (REDUCED CHLOROPLAST COVERAGE 2), and AT5G04550. These five proteins are presumably subject to complex phosphorylation modification regulation in systemic leaves of Psm ES4326 locally inoculated plants. FIGURE 3 Phosphoproteomic analysis. (A) Significantly changed phosphorylated peptides in...”
  • “...3B and Supplementary Table 4 ). Among these, five proteins (ABCG36, IQD14, EIF4G1, TSS, and AT5G04550) had five or more significantly changed phosphopeptides. Functions of these proteins are evidently regulated by complex phosphorylation modification during SAR induction. ABC transporters clearly play essential roles in plant growth/development...”
• A user-friendly platform for yeast two-hybrid library screening using next generation sequencing
  Erffelinck, PloS one 2018
  • “...57 AT1G18570 1654 0,351 2,529 7,207 AtMYB51/BW51A 58 AT2G33580 2239 0,259 1,868 7,207 LYK5 59 AT5G04550 2580 0,225 1,621 7,207 60 AT4G03560 2674 0,217 1,564 7,207 ATCCH1/ATTPC1 70 AT4G02020 2876 0,202 1,454 7,207 EZA1/SDG10 71 AT3G13690 3321 0,175 1,259 7,207 10.1371/journal.pone.0201270.t004 Table 4 Signalto-noise ratio of...”
  • “...AT5G47110 1088 1,0668 8,3290 7,8074 LIL3:2 26 AT3G04730 1279 0,4537 3,5426 7,8074 IAA16 Y 27 AT5G04550 2580 0,2249 1,7562 7,8074 28 AT3G15760 843 0,6884 4,9614 7,2068 Y 29 AT1G12270 1949 0,5955 4,2919 7,2068 Hop1 30 AT3G47980 1097 0,5290 3,8126 7,2068 Y 31 AT1G02650 1542 0,3764 2,7124...”
• Ectopic RING zinc finger gene from hot pepper induces totally different genes in lettuce and tobacco
  Kesawat, Molecular breeding : new strategies in plant improvement 2018
  • “...death domain protein (DCD) 0 0 0 5.13 At2g18970 Uncharacterized gene 0.83 1.92 0.95 3.40 At5g04550 Uncharacterized gene 0.11 1.43 1.67 3.29 At1g55160 Uncharacterized gene 0.63 1.13 1.86 3.54 At2g11630 Uncharacterized gene 0.02 0.23 0.59 6.04 At2g24755 Uncharacterized gene 0 0.32 0.51 4.97 At5g26775 Uncharacterized gene...”
• Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase
  Yang, Molecular & cellular proteomics : MCP 2013
  • “...AT3G08780 AT3G58440 AT3G60380 AT4G21930 AT4G37210 AT5G04550 32 AT5G63190 SHTLFADLNIKpSPTGGK KVQLSDSVQGYKpSPLR oxMGQpTPERPSISSVKK AIAAKIFpTGLR pSP pSP pTP...”

PSI1_ARATH / Q9XID5 Protein PSK SIMULATOR 1; AtPSI1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_174692 Ikzf5 (DUF668) from Arabidopsis thaliana
AT1G34320 hypothetical protein from Arabidopsis thaliana
Aligns to 157:213 / 657 (8.7%), covers 100.0% of PF11961, 87.6 bits

• function: Promotes seedling growth probably via the regulation of phytosulfokine (PSK) signaling; PSK are peptide phytohormones acting as growth factors (PubMed:25062973). Together with PSI2 and PSI3, required during vegetative growth and reproduction (PubMed:25062973). May also have a function in carbohydrate metabolism (PubMed:25062973).
  disruption phenotype: Short roots and hypocotyls due to both a reduced cell number and reduced cell elongation (PubMed:25062973). Plants missing both PSI1 and PSI3 are dwarf and contain reduced starch levels; these phenotypes are partially rescued by sucrose (PubMed:25062973).
• The PSI family of nuclear proteins is required for growth in arabidopsis.
  Stührwohldt, Plant molecular biology 2014 (PubMed)
  • GeneRIF: PSI1 protein has a role in Arabidopsis growth.
• The TIR-NB-LRR pair DSC1 and WRKY19 contributes to basal immunity of Arabidopsis to the root-knot nematode Meloidogyne incognita
  Warmerdam, BMC plant biology 2020
  • “...] AT5G45380 8.41 0.09 DEGRADATION OF UREA 3 (DUR3) Y Urea uptake [ 38 ] AT1G34320 8.11 0.18 PSK SIMULATOR 1 (PSI1) Y Cell growth [ 39 ] AT5G14470 7.96 0.19 Galactokinase 2 (GALK2) Y Abiotic stress response [ 40 ] AT1G64790 2.84 1.19 ILITHYIA (ILA)...”
• Expression and integrated network analyses revealed functional divergence of NHX-type Na⁺/H⁺ exchanger genes in poplar
  Tian, Scientific reports 2017
  • “...co-expression network. Gene Name Gene ID Arabidopsis orthologous Functional Description Co-expressed with PtNHXs PSI1 Potri.013G115300 AT1G34320 Located in plasma membrane, required for growth. PtNHX6 , PtNHX7 , and PtNHX8 MKP1 Potri.008G049900 AT3G55270 Involved in protein dephosphorylation, inactivation of MAPK activity, response to salt stress, UV, and...”

NP_001331590 D-lactate dehydrogenase (DUF668) from Arabidopsis thaliana
Aligns to 151:207 / 471 (12.1%), covers 100.0% of PF11961, 82.5 bits

• The PSI family of nuclear proteins is required for growth in arabidopsis.
  Stührwohldt, Plant molecular biology 2014 (PubMed)
  • GeneRIF: PSI3 protein has a role in Arabidopsis growth.

PSI3_ARATH / P0DO24 Protein PSK SIMULATOR 3; AtPSI3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G08660 hypothetical protein from Arabidopsis thaliana
Aligns to 151:207 / 649 (8.8%), covers 100.0% of PF11961, 81.7 bits

• function: Promotes plant growth, especially at the vegetative stage, probably via the regulation of phytosulfokine (PSK) signaling; PSK are peptide phytohormones acting as growth factors (PubMed:25062973). Together with PSI2 and PSI3, required during vegetative growth and reproduction (PubMed:25062973). May also have a function in carbohydrate metabolism (PubMed:25062973).
  disruption phenotype: Reduced response to phytosulfokine (PSK) in roots (PubMed:25062973). Small rosettes and dwarf plants as well as early senescence of older leaves (PubMed:25062973). Reduced fertility, premature senescence and severe dwarfism in psi2-1 psi3-1 plants due to reduced cell growth and proliferation as well as premature leaf growth arrest (PubMed:25062973). Plants missing both PSI1 and PSI3 are dwarf and contain reduced starch levels; these phenotypes are partially rescued by sucrose (PubMed:25062973).
• AtMAD: Arabidopsis thaliana multi-omics association database
  Lan, Nucleic acids research 2021
  • “...be involved in flower development process with experimental supports ( 31 , 32 ). Moreover, AT5G08660 (PSI3) was identified to connect to YieldMainEffect2009 (seed weight) in AtMAD, which was consistent with the positive role of PSI3 in regulating plant growth and seed development ( 33 )....”
• Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage
  Broekgaarden, PloS one 2018
  • “...transporter G family member 22 3.56 Wf-2 Bo2g008820 AT5G07920 Diacylglycerol kinase1 (DGK1) 1.74 Wf-2 Bo2g009180 AT5G08660 Hypothetical protein 1.68 Wf-2 Bo2g009640 AT5G09960 Hypothetical protein 4.13 Wf-2 Bo2g010640 AT5G11790 Protein N-MYC downregulated-like 2 (NDL2) 2.58 Wf-2 Bo2g010810 AT5G12080 Mechanosensitive channel of small conductance-like 10 (MSL10) 1.41 Wf-2...”

PSI2_ARATH / Q9SA91 Protein PSK SIMULATOR 2; AtPSI2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G30755 hypothetical protein from Arabidopsis thaliana
NP_001320551 elongation factor G, putative (DUF668) from Arabidopsis thaliana
Aligns to 136:192 / 615 (9.3%), covers 100.0% of PF11961, 74.7 bits

• function: Promotes seedling growth probably via the regulation of phytosulfokine (PSK) signaling; PSK are peptide phytohormones acting as growth factors (PubMed:25062973). Involved in PSK-induced root growth (PubMed:25062973). Together with PSI1 and PSI3, required during vegetative growth and reproduction (PubMed:25062973).
  disruption phenotype: Reduced fertility, premature senescence and severe dwarfism in psi2-1 psi3-1 plants due to reduced cell growth and proliferation as well as premature leaf growth arrest.
• Co-Expression Networks in Sunflower: Harnessing the Power of Multi-Study Transcriptomic Public Data to Identify and Categorize Candidate Genes for Fungal Resistance
  Ribone, Plants (Basel, Switzerland) 2023
  • “...0.86 AT2G40140 51.25 97 0 HanXRQChr13g0399921 Green39 1 AT3G09830 66.92 88 0 HanXRQChr12g0366961 Green39 0.81 AT1G30755 49.69 100 0 HanXRQChr10g0300021 Root36 0.96 AT5G01050 53.74 98 0 HanXRQChr05g0161441 Root36 0.94 AT1G22400 52.50 98 0 HanXRQChr07g0205991 Root44/Green18 1.0/0.39 AT1G08450 70.12 95 0 HanXRQChr17g0553831 Root44 0.89 AT5G42510 42.47 64...”
• Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress
  Zhao, BMC genomics 2021
  • “...5 ). Homology analysis showed that Gh_DUF66808 and Gh_DUF66823 have the highest homology with Arabidopsis AT1G30755 , which is highly related to growth, development and defense in Arabidopsis [ 53 ]. In a study conducted with flg22 treatment in Arabidopsis, the expression levels of 35 genes...”
  • “...of DUF668 gene family in G. hirsutum. Additional file 6: Figure S4. Interaction network of AT1G30755 proteins in Arabidopsi s. Additional file 7: Table S3. cis-acting elements analysis of DUF668 family members in G. hirsutum. Additional file 8: Table S4. All primers used in this study....”
• Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes
  Zhao, PloS one 2019
  • “...0.0) AGO2 | AGO2 (argonaute 2); nucleic acid binding Bra023130 21507995..21510828 Down-regulated SNPs hypothetical protein AT1G30755 (E = 3e-138) | unknown protein Bra032370 22098548..22098796 Down-regulated SNPs hypothetical protein AT1G30250 (E = 3e-015) | unknown protein Bra023188 20887186..20888028 Up-regulated SNPs hypothetical protein AT1G31460 (E = 1e-037) |...”
• Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?
  Gutiérrez, Genome biology 2004
  • “...Representative EST clone ID Locus Description Cluster 1 PS 111O21XP At1g19180 Expressed protein PS 123B21T7 At1g30755 Expressed protein PS 209F11T7 At1g63090 F-box protein (SKP1 interacting partner 3-related) PS 181I16T7 At1g72510 Expressed protein PS 148B19T7 At1g74950 Expressed protein PS 40F4T7 At2g23320 Identical to WRKY DNA-binding protein 15...”
• The PSI family of nuclear proteins is required for growth in arabidopsis.
  Stührwohldt, Plant molecular biology 2014 (PubMed)
  • GeneRIF: PSI2 protein has a role in Arabidopsis growth.

AT5G51670 hypothetical protein from Arabidopsis thaliana
Aligns to 39:95 / 474 (12.0%), covers 100.0% of PF11961, 70.8 bits

• Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis
  Zheng, PLoS genetics 2010
  • “...found between At1g66400 and At1g66410 . (F) A novel, base-paired RNA on Chr. 5 between At5g51670 and At5g51680 . (G) A Chr. 5 intergenic dsRNA hotspot between At5g54180 and At5g54190 . (HJ) Random-primed RT-PCR analysis of the novel, base-paired RNAs that are pictured in EG using...”
• Genome-wide analysis of the auxin-responsive transcriptome downstream of iaa1 and its expression analysis reveal the diversity and complexity of auxin-regulated gene expression
  Lee, Journal of experimental botany 2009
  • “...0.011 1.3 0.022 3 1 At1g23340 263042_at Expressed protein 2.4 0.012 1.9 0.231 0 2 At5g51670 248423_at Expressed protein 2.4 0.016 2.0 0.266 1 0 At1g29195 260841_at Expressed protein 2.3 0.016 1.0 0.081 2 0 At1g23060 264902_at Expressed protein 2.2 0.029 1.4 0.039 1 1 At2g40000...”
• Genetic regulation of gene expression during shoot development in Arabidopsis
  DeCook, Genetics 2006
  • “...3 At5g50550 At5g50560 At5g50565 At5g50570 At5g50580 At5g50630 At5g51670 At5g51820 At5g51960 3 At5g51980 3 At5g53000 3 At5g53050 3 At5g53070 At5g53120 3 3...”

Or search for genetic data about PF11961 in the Fitness Browser