Family Search for PF11998 (DUF3493)

PF11998 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

LPA1_ARATH / Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G02910 LPA1 (LOW PSII ACCUMULATION1); binding from Arabidopsis thaliana
Aligns to 182:260 / 453 (17.4%), covers 98.6% of PF11998, 83.8 bits

• function: Chaperone required for efficient photosystem II (PSII) assembly. Binds to psbA during de novo biogenesis of PSII.
  subunit: Interacts with psbA, but not with psbD, petB, ALB3, LPA2 or LPA3. Is not a component of the PSII complex.
  disruption phenotype: Pale-green phenotype and greatly reduced growth. Disturbed thylakoid membrane systems.
• Commonalities and specialties in photosynthetic functions of PROTON GRADIENT REGULATION5 variants in Arabidopsis
  Penzler, Plant physiology 2022
  • “...E 02 Q6STH5 HCHF101 Fe-S cluster assembly factor HCF101 1.504 1.80 E 02 PSII biogenesis Q9SRY4 LPA1 Protein LOW PSII ACCUMULATION 1 0.322 3.53 E 03 Q9LR64 PSB27 PSII repair protein PSB27-H1 0.460 3.53 E 03 Q9ZVL6 TLP18.3 Thylakoid Lumen Protein 18.3 0.493 3.53 E 03...”
• Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29
  Mostafa, Frontiers in plant science 2017
  • “...NAD(P)H-quinone oxidoreductase subunit H NDHH 1.374 0.034 Photosynthesis and oxidation reduction activities D, T Tair Q9SRY4 At1g02910 Protein low PSII accumulation 1 LPA1 1.368 0.016 Member of photosystem D, H, S, T, M Peng et al., 2006 Q9SL67 At2g20140 26S proteasome regulatory subunit 4 homolog B...”
• Eukaryote-specific assembly factor DEAP2 mediates an early step of photosystem II assembly in Arabidopsis
  Keller, Plant physiology 2023
  • “...Volvox carteri (Vocar.0018s0093), and Chlamydomonas reinhardtii (Cre16.g679300) and PAM68 and LPA1 from Arabidopsis (At4g19100 and At1g02910, respectively). Supplementary Material kiad446_Supplementary_Data Click here for additional data file. Acknowledgments The authors thank Paulina Heinkow for excellent technical assistance within the MS Proteomics Unit Biology of Plants of the...”
  • “...to the work described in this paper: At3g51510 Gramene: AT3G51510 At3g51510 Araport: AT3G51510 lpa1 Gramene: AT1G02910 lpa1 Araport: AT1G02910 ATP CHEBI: CHEBI:15422 protein CHEBI: CHEBI:36080 References Alonso JM , Stepanova AN , Leisse TJ , Kim CJ , Chen H , Shinn P , Stevenson DK...”
• Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29
  Mostafa, Frontiers in plant science 2017
  • “...oxidoreductase subunit H NDHH 1.374 0.034 Photosynthesis and oxidation reduction activities D, T Tair Q9SRY4 At1g02910 Protein low PSII accumulation 1 LPA1 1.368 0.016 Member of photosystem D, H, S, T, M Peng et al., 2006 Q9SL67 At2g20140 26S proteasome regulatory subunit 4 homolog B RPT2B...”
• Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis
  Lu, Frontiers in plant science 2016
  • “...C-terminal processing of D1 Yamamoto et al., 2001 ; Che et al., 2013 LPA1/PratA slr2048 At1g02910 50 47 TM TPR Biogenesis and assembly of the D1 protein Peng et al., 2006 MET1 At1g55480 37 30 TM TPR Supercomplex formation in PSII repair Ishikawa et al., 2005a...”
• New putative chloroplast vesicle transport components and cargo proteins revealed using a bioinformatics approach: an Arabidopsis model
  Khan, PloS one 2013
  • “...Putative Motif TM spans Orientation Putative transmembrane cargos having a diacidic motif at the C-terminus At1g02910 Chloroplast membrane chaperone, required for efficient PSII assembly(AtLPA1) E E E , D F D , E I E 2 N(In)-C(In) At1g03160 Dynamin-type GTPase (AtFZL) D I D 2 N(In)-C(In)...”
• Evidence that miRNAs are different from other RNAs
  Zhang, Cellular and molecular life sciences : CMLS 2006
  • “...390 (A), 5.8S rRNA (B), tRNA (C), and protein-coding At1g02910 mRNA (D). Each type of RNA has a similar hairpin structure for the whole or partial sequence....”

GRMZM2G383154 uncharacterized protein LOC100275611 from Zea mays
Aligns to 180:258 / 450 (17.6%), covers 98.6% of PF11998, 79.9 bits

• Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
  Vercruysse, Plant biotechnology journal 2020
  • “...that the LPA1 expression is conserved as it takes part in a onetoone orthology with GRMZM2G383154, previously described as a chloroplast maintenance gene as well (Huang etal ., 2013 ). Among these 217 orthology groups, 41 with unknown genes in both species were identified which could...”

F4JM22 LOW PSII ACCUMULATION-like protein from Arabidopsis thaliana
AT4G28740 hypothetical protein from Arabidopsis thaliana
Aligns to 91:169 / 347 (22.8%), covers 97.3% of PF11998, 77.3 bits

• Identification of Candidate Ergosterol-Responsive Proteins Associated with the Plasma Membrane of Arabidopsis thaliana
  Khoza, International journal of molecular sciences 2019
  • “...Q9SRH6 Response --- 949.547 1.6 237.0 5.91 A4 Uncharacterized protein (LOW PSII ACCUMULATION-like protein) At4g28740 F4JM22 Chloroplast --- 995.600 -0.1 131.8 1.24 Structure (1) A2 Putative clathrin assembly protein At1g14910 P94017 Transport Clathrin binding 1314.742 1.3 122.2 1.22 Unknown (8) A11 Triacylglycerol lipase-like 1 At1g45200 Q8L7S1...”
• Development of a Target Enrichment Probe Set for Conifer (REMcon)
  Khan, Biology 2024
  • “...900 62 MA_199851 AT3G01660 350 63 MA_196209 AT4G36530 273 64 MA_187402 AT4G31460 471 65 MA_173127 AT4G28740 548 66 MA_159115 AT2G27600 1191 67 MA_159115 AT4G27600 1056 68 MA_127668 AT3G15290 465 69 MA_123340 AT2G19870 1137 70 MA_121485 AT1G02410 749 71 MA_121026 AT1G08460 570 72 MA_106933 AT2G266801 636 73...”
• Local auxin biosynthesis acts downstream of brassinosteroids to trigger root foraging for nitrogen
  Jia, Nature communications 2021
  • “...We then analyzed T-DNA insertion lines of YUC8 and another two genes ( At4g28730 and At4g28740 ) located within the 20-kb interval centered around the identified SNP (Fig. 1e ). Knockout lines of At4g28730 and At4g28740 exhibited LN-induced LR length comparable to wild-type plants, and the...”
  • “...not respond to LN (Supplementary Fig. 1be ), excluding an eventual role of At4g28730 and At4g28740 in regulating LR elongation induced by mild N deficiency. By contrast, loss of YUC8 expression significantly impaired the LR response to LN (Fig. 1f, h ). In two independent YUC8...”
• Identification of Candidate Ergosterol-Responsive Proteins Associated with the Plasma Membrane of Arabidopsis thaliana
  Khoza, International journal of molecular sciences 2019
  • “...At3g01290 Q9SRH6 Response --- 949.547 1.6 237.0 5.91 A4 Uncharacterized protein (LOW PSII ACCUMULATION-like protein) At4g28740 F4JM22 Chloroplast --- 995.600 -0.1 131.8 1.24 Structure (1) A2 Putative clathrin assembly protein At1g14910 P94017 Transport Clathrin binding 1314.742 1.3 122.2 1.22 Unknown (8) A11 Triacylglycerol lipase-like 1 At1g45200...”

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