PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11999 (DUF3494)

PF11999.8 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YP_001404652 hypothetical protein (RefSeq) from Candidatus Methanoregula boonei 6A8
5 alignments in 49:1183 / 1183 (86.6%), covering up to 100.0% of PF11999, 1173.0 bits

YP_001403476 hypothetical protein (RefSeq) from Candidatus Methanoregula boonei 6A8
Aligns to 48:254 / 410 (50.5%), covers 99.0% of PF11999, 236.8 bits

YP_523138 Ig-like, group 2 (NCBI) from Rhodoferax ferrireducens DSM 15236
Aligns to 318:524 / 526 (39.4%), covers 100.0% of PF11999, 234.6 bits

YP_676864 CHU large protein; antifreeze-related protein (NCBI) from Cytophaga hutchinsonii ATCC 33406
Aligns to 163:366 / 368 (55.4%), covers 99.5% of PF11999, 225.2 bits

ZP_01462925 antifreeze protein (NCBI) from Stigmatella aurantiaca DW4/3-1
Aligns to 281:469 / 473 (40.0%), covers 99.5% of PF11999, 217.4 bits

YP_944155 hypothetical protein (NCBI) from Psychromonas ingrahamii 37
Aligns to 44:243 / 258 (77.5%), covers 100.0% of PF11999, 214.5 bits

YP_749708 Ig-like, group 2 (RefSeq) from Shewanella frigidimarina NCIMB 400
Aligns to 271:480 / 486 (43.2%), covers 100.0% of PF11999, 212.1 bits

YP_562920 hypothetical protein (RefSeq) from Shewanella denitrificans OS217
Aligns to 382:591 / 595 (35.3%), covers 100.0% of PF11999, 209.6 bits

YP_562921 hypothetical protein (RefSeq) from Shewanella denitrificans OS217
Aligns to 269:478 / 482 (43.6%), covers 100.0% of PF11999, 208.0 bits

IBP_LEUSY / C7F6X3 Ice-binding protein; Antifreeze protein; AFP; LeIBP from Leucosporidium sp. (strain AY30) (Arctic yeast) (see 6 papers)
Aligns to 36:241 / 261 (78.9%), covers 100.0% of PF11999, 201.1 bits

IBP_COLSX / A5XB26 Ice-binding protein; Antifreeze protein; AFP from Colwellia sp. (see 2 papers)
Aligns to 43:242 / 253 (79.1%), covers 100.0% of PF11999, 200.7 bits

IBPKB_TYPIS / Q76CE6 Ice-binding protein K3-B1; Antifreeze protein 6; AFP6; TAFP-2; TisAFP6 from Typhula ishikariensis (Gray snow mold fungus) (see 2 papers)
Aligns to 36:241 / 243 (84.8%), covers 99.5% of PF11999, 198.7 bits

IBP_FLAFP / H7FWB6 Ice-binding protein; Antifreeze protein; AFP; FfIBP from Flavobacterium frigoris (strain PS1) (see 3 papers)
Aligns to 75:273 / 276 (72.1%), covers 100.0% of PF11999, 197.4 bits

IBP1_SHEFN / Q086E4 Ice-binding protein 1; Antifreeze protein 1; AFP 1; Ice adhesin 1 from Shewanella frigidimarina (strain NCIMB 400) (see paper)
Aligns to 670:889 / 892 (24.7%), covers 100.0% of PF11999, 195.9 bits

IBPKA_TYPIS / Q76CE8 Ice-binding protein K1-A; Antifreeze protein 8; AFP8; TAFP-3; TisAFP8 from Typhula ishikariensis (Gray snow mold fungus) (see 2 papers)
Aligns to 36:241 / 243 (84.8%), covers 99.5% of PF11999, 195.3 bits

ZP_01118128 hypothetical protein (NCBI) from Polaribacter irgensii 23-P
Aligns to 64:263 / 265 (75.5%), covers 100.0% of PF11999, 194.0 bits

D0EKL2 Antifreeze protein Afp1 from Glaciozyma antarctica
Aligns to 55:177 / 177 (69.5%), covers 48.8% of PF11999, 36.1 bits

Or search for genetic data about PF11999 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory