PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF12010 (DUF3502)

PF12010 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

LLKF_1608 sugar ABC transporter substrate-binding protein from Lactococcus lactis subsp. lactis KF147
Aligns to 413:481 / 483 (14.3%), covers 100.0% of PF12010, 104.8 bits

FAY30_22440 ABC transporter substrate-binding protein from Bacillus sp. S3
Aligns to 414:482 / 485 (14.2%), covers 98.6% of PF12010, 103.0 bits

Csac_0681 ABC-type sugar transport system periplasmic component-like protein from Caldicellulosiruptor saccharolyticus DSM 8903
Aligns to 426:494 / 500 (13.8%), covers 97.1% of PF12010, 99.1 bits

lmo2007 weakly similar to putative sugar-binding lipoproteins from Listeria monocytogenes EGD-e
Aligns to 414:482 / 485 (14.2%), covers 98.6% of PF12010, 97.4 bits

IUJ47_RS13485 ABC transporter substrate-binding protein from Enterococcus faecalis
Aligns to 417:485 / 488 (14.1%), covers 98.6% of PF12010, 97.0 bits

EF2221 ABC transporter, substrate-binding protein from Enterococcus faecalis V583
Q832K5 ABC transporter, substrate-binding protein from Enterococcus faecalis (strain ATCC 700802 / V583)
Aligns to 417:485 / 488 (14.1%), covers 98.6% of PF12010, 97.0 bits

COB47_0549 ABC transporter substrate-binding protein from Caldicellulosiruptor obsidiansis OB47
Aligns to 426:494 / 500 (13.8%), covers 97.1% of PF12010, 96.3 bits

CPE2078 conserved hypothetical protein from Clostridium perfringens str. 13
Q8XIN7 DUF3502 domain-containing protein from Clostridium perfringens (strain 13 / Type A)
Aligns to 410:478 / 482 (14.3%), covers 100.0% of PF12010, 96.3 bits

LP_RS15260 ABC transporter substrate-binding protein from Lactiplantibacillus plantarum WCFS1
Aligns to 420:488 / 490 (14.1%), covers 98.6% of PF12010, 96.0 bits

Q8XLL1 DUF3502 domain-containing protein from Clostridium perfringens (strain 13 / Type A)
CPE1030 conserved hypothetical protein from Clostridium perfringens str. 13
Aligns to 411:479 / 482 (14.3%), covers 100.0% of PF12010, 94.4 bits

ERH_0228, ERH_RS01215 ABC transporter substrate-binding protein from Erysipelothrix rhusiopathiae str. Fujisawa
Aligns to 411:479 / 481 (14.3%), covers 100.0% of PF12010, 94.3 bits

M28_Spy1349 sugar-binding protein from Streptococcus pyogenes MGAS6180
Aligns to 410:478 / 481 (14.3%), covers 100.0% of PF12010, 94.1 bits

5mltA / A0A0H2UMY0 Structural characterization of a carbohydrate substrate bind protein from streptococcus pneumoniae (see paper)
Aligns to 383:452 / 454 (15.4%), covers 100.0% of PF12010, 89.6 bits

SBP92_STRPN / A0A0H2UMY0 Carbohydrate ABC transporter substrate-binding protein; Carbohydrate substrate-binding protein SP0092; Carbohydrate SBP SP0092 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see 2 papers)
SPD_0090 ABC transporter, substrate-binding protein from Streptococcus pneumoniae D39
SP_0092, SP_RS00475 ABC transporter substrate-binding protein from Streptococcus pneumoniae TIGR4
Aligns to 419:488 / 491 (14.3%), covers 100.0% of PF12010, 89.5 bits

spr0083 ABC transporter solute binding protein - sugar transport from Streptococcus pneumoniae R6
Aligns to 442:511 / 514 (13.6%), covers 100.0% of PF12010, 89.3 bits

SGO_1763 ABC transporter substrate-binding protein SP0092 from Streptococcus gordonii str. Challis substr. CH1
Aligns to 414:483 / 486 (14.4%), covers 100.0% of PF12010, 88.8 bits

RIL182_03796 ABC transporter substrate-binding protein from Roseburia intestinalis L1-82
Aligns to 432:500 / 502 (13.7%), covers 98.6% of PF12010, 88.1 bits

CPE1257 conserved hypothetical protein from Clostridium perfringens str. 13
Aligns to 412:480 / 483 (14.3%), covers 98.6% of PF12010, 84.1 bits

B9H01_RS09190 ABC transporter substrate-binding protein from Streptococcus suis
Aligns to 422:491 / 493 (14.2%), covers 100.0% of PF12010, 82.0 bits

BFP66_RS08960 ABC transporter substrate-binding protein from Streptococcus suis
Aligns to 422:491 / 493 (14.2%), covers 100.0% of PF12010, 81.9 bits

Or search for genetic data about PF12010 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory