PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF12010 (DUF3502)

PF12010 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

FAY30_22440 ABC transporter substrate-binding protein from Bacillus sp. S3
Aligns to 352:482 / 485 (27.0%), covers 99.2% of PF12010, 155.2 bits

CPE1030 conserved hypothetical protein (NCBI ptt file) from Clostridium perfringens str. 13
Aligns to 351:479 / 482 (26.8%), covers 100.0% of PF12010, 152.4 bits

lmo2007 weakly similar to putative sugar-binding lipoproteins (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 352:482 / 485 (27.0%), covers 100.0% of PF12010, 149.8 bits

CPE2078 conserved hypothetical protein (NCBI ptt file) from Clostridium perfringens str. 13
Aligns to 349:478 / 482 (27.0%), covers 100.0% of PF12010, 145.7 bits

Csac_0681 ABC-type sugar transport system periplasmic component-like protein (RefSeq) from Caldicellulosiruptor saccharolyticus DSM 8903
Aligns to 362:494 / 500 (26.6%), covers 100.0% of PF12010, 145.3 bits

CPE1257 conserved hypothetical protein (NCBI ptt file) from Clostridium perfringens str. 13
Aligns to 352:480 / 483 (26.7%), covers 100.0% of PF12010, 143.3 bits

COB47_0549 ABC transporter substrate-binding protein from Caldicellulosiruptor obsidiansis OB47
Aligns to 362:494 / 500 (26.6%), covers 100.0% of PF12010, 142.0 bits

LLKF_1608 sugar ABC transporter substrate-binding protein (RefSeq) from Lactococcus lactis subsp. lactis KF147
Aligns to 350:481 / 483 (27.3%), covers 100.0% of PF12010, 139.0 bits

IUJ47_RS13485 ABC transporter substrate-binding protein from Enterococcus faecalis
Aligns to 355:485 / 488 (26.8%), covers 99.2% of PF12010, 128.9 bits

M28_Spy1349 sugar-binding protein (NCBI) from Streptococcus pyogenes MGAS6180
Aligns to 348:478 / 481 (27.2%), covers 100.0% of PF12010, 127.8 bits

EF2221 ABC transporter, substrate-binding protein (NCBI ptt file) from Enterococcus faecalis V583
Aligns to 355:485 / 488 (26.8%), covers 99.2% of PF12010, 127.4 bits

LP_RS15260 ABC transporter substrate-binding protein from Lactiplantibacillus plantarum WCFS1
Aligns to 356:488 / 490 (27.1%), covers 100.0% of PF12010, 121.7 bits

ERH_0228, ERH_RS01215 ABC transporter substrate-binding protein from Erysipelothrix rhusiopathiae str. Fujisawa
Aligns to 349:479 / 481 (27.2%), covers 100.0% of PF12010, 121.2 bits

5mltA / A0A0H2UMY0 Structural characterization of a carbohydrate substrate bind protein from streptococcus pneumoniae (see paper)
Aligns to 319:452 / 454 (29.5%), covers 100.0% of PF12010, 118.2 bits

SBP92_STRPN / A0A0H2UMY0 Carbohydrate ABC transporter substrate-binding protein; Carbohydrate substrate-binding protein SP0092; Carbohydrate SBP SP0092 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see 2 papers)
SPD_0090 ABC transporter, substrate-binding protein (NCBI) from Streptococcus pneumoniae D39
SP_0092 ABC transporter substrate-binding protein from Streptococcus pneumoniae TIGR4
Aligns to 355:488 / 491 (27.3%), covers 100.0% of PF12010, 118.0 bits

spr0083 ABC transporter solute binding protein - sugar transport (NCBI ptt file) from Streptococcus pneumoniae R6
Aligns to 378:511 / 514 (26.1%), covers 100.0% of PF12010, 117.9 bits

SGO_1763 ABC transporter substrate-binding protein SP0092 (RefSeq) from Streptococcus gordonii str. Challis substr. CH1
Aligns to 350:483 / 486 (27.6%), covers 100.0% of PF12010, 117.8 bits

Or search for genetic data about PF12010 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory