Family Search for PF12012 (DUF3504)
PF12012 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
ZMYM3_MOUSE / Q9JLM4 Zinc finger MYM-type protein 3; DXHXS6673E protein; Zinc finger protein 261 from Mus musculus (Mouse) (see paper)
Aligns to 1186:1353 / 1370 (12.3%), covers 99.4% of PF12012, 221.2 bits
- function: Plays a role in the regulation of cell morphology and cytoskeletal organization.
subunit: May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. - Microarray-based analysis of fish egg quality after natural or controlled ovulation.
Bonnet, BMC genomics 2007 - “...Zinc finger protein 16 (Zinc finger protein KOX9) 311 Omy.6191 tcbk0009.g.08 BX875276 tcbk0009c.g.08_5.1.s.om.8 ZNF261 MOUSE (Q9JLM4) Zinc finger protein 261 (DXHXS6673E protein) 254 Omy.2759 Genes subsequently studied by real time PCR are bolded. For each gene, clone name, GenBank accession number, official human symbol and corresponding...”
XP_036017934 zinc finger MYM-type protein 3 isoform X4 from Mus musculus
Aligns to 1220:1387 / 1404 (12.0%), covers 99.4% of PF12012, 221.2 bits
ZMYM4_HUMAN / Q5VZL5 Zinc finger MYM-type protein 4; Zinc finger protein 262 from Homo sapiens (Human) (see 2 papers)
Aligns to 1356:1526 / 1548 (11.0%), covers 100.0% of PF12012, 221.0 bits
- function: Plays a role in the regulation of cell morphology and cytoskeletal organization.
- Proteome Analysis of Aflibercept Intervention in Experimental Central Retinal Vein Occlusion
Cehofski, Molecules (Basel, Switzerland) 2022 - “...light chain roadblock-type 1 DYNLRB1 0.027 0.85 P36955 Pigment epithelium-derived factor (PEDF) SERPINF1 0.020 0.84 Q5VZL5 Zinc finger MYM-type protein 4 ZMYM4 0.030 0.83 P83916 Chromobox protein homolog 1 CBX1 0.046 0.82 P62272;P62269 40S ribosomal protein S18 RPS18 0.030 0.76 Q9Y2R9 28S ribosomal protein S7, mitochondrial...”
- Plasma proteomic analysis reveals altered protein abundances in cardiovascular disease.
Lygirou, Journal of translational medicine 2018 - “...Q5T481 RNA-binding protein 20 4 4.84 9.84E04 4 4.61 2.35E01 [ 47 , 82 ] Q5VZL5 Zinc finger MYM-type protein 4 2 0.36 5.30E03 2 0.38 2.62E01 O15553 Pyrin 2 11.75 1.72E03 2 2.65 2.74E01 [ 49 51 , 83 ] Q96PV0 Ras/Rap GTPase-activating protein SynGAP...”
- Proteomic identification of cyclophilin A as a potential biomarker and therapeutic target in oral submucous fibrosis.
Yuan, Oncotarget 2016 - “...Fibrinogen beta chain FGB 55,928/4.14 2 87 P02679 Fibrinogen gamma chain FGG 51,512/5.24 5 112 Q5VZL5 Zinc finger MYM-type protein 4 ZMYM4 172,788/6.46 3 85 Q9UJY1 Heat shock protein beta-8 HSPB8 21,604/ 3 69 P02766 Transthyretin TTR 15,887/5.35 5 188 P06732 muscle creatine kinase M CKM...”
- Quantitative proteomic analysis for high-throughput screening of differential glycoproteins in hepatocellular carcinoma serum
Gao, Cancer biology & medicine 2015 - “...6 OS=Homo sapiens GN=UBXN6 PE=1 SV=1 - [UBXN6_HUMAN] 4.08 1 1 1 441 49.7 6.89 Q5VZL5 Zinc finger MYM-type protein 4 OS=Homo sapiens GN=ZMYM4 PE=1 SV=1 - [ZMYM4_HUMAN] 0.52 1 1 1 1,548 172.7 6.84 Q6ZQV5 Zinc finger protein 788 OS=Homo sapiens GN=ZNF788 PE=2 SV=2 -...”
- Splicing factor 2-associated protein p32 participates in ribosome biogenesis by regulating the binding of Nop52 and fibrillarin to preribosome particles
Yoshikawa, Molecular & cellular proteomics : MCP 2011 - “...112 113 Unknown Q96JP5 Q9H5H4 Q14966 Q8NAF0 Q5VZL5 Q8N9Z2 Q9Y4P3 Q9UJZ1 Q9P2N5 Q5T8P6 Q9NWS8 ZFP91_HUMAN ZN768_HUMAN ZN638_HUMAN ZN579_HUMAN ZMYM4_HUMAN...”
ZMYM3_HUMAN / Q14202 Zinc finger MYM-type protein 3; Zinc finger protein 261 from Homo sapiens (Human) (see 5 papers)
Aligns to 1185:1353 / 1370 (12.3%), covers 99.4% of PF12012, 221.0 bits
- function: Plays a role in the regulation of cell morphology and cytoskeletal organization.
subunit: May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. - Deleterious, protein-altering variants in the transcriptional coregulator ZMYM3 in 27 individuals with a neurodevelopmental delay phenotype
Hiatt, American journal of human genetics 2023 (secret) - High-throughput quantitative proteomic analysis of dengue virus type 2 infected A549 cells.
Chiu, PloS one 2014 - “...protein KIF20A 0.34 2 1.7210 29 Mitotic kinesin required for chromosome passenger complex-mediated cytokinesis. ZMYM3 Q14202 Zinc finger MYM-type protein 3 0.35 2 3.0810 6 Plays a role in the regulation of cell morphology and cytoskeletal organization. CENPF P49454 Centromere protein F 0.35 2 1.167810 2...”
- Heme-binding-mediated negative regulation of the tryptophan metabolic enzyme indoleamine 2,3-dioxygenase 1 (IDO1) by IDO2.
Lee, Experimental & molecular medicine 2014 - “...1.988 O75503 CLN5 ceroid-lipofuscinosis neuronal protein 5 1.919 P61970 NUTF2 Nuclear transport factor 2 1.908 Q14202 ZMYM3 Isoform 1 of zinc finger MYM-type protein 3 1.904 P00918 CA2 Carbonic anhydrase 2 1.904 P05387 RPLP2 60S acidic ribosomal protein P2 1.904 P49643 PRIM2 Isoform 1 of DNA...”
XP_047298589 zinc finger MYM-type protein 3 isoform X2 from Homo sapiens
Aligns to 1173:1341 / 1358 (12.4%), covers 99.4% of PF12012, 220.9 bits
- Deleterious, protein-altering variants in the transcriptional coregulator ZMYM3 in 27 individuals with a neurodevelopmental delay phenotype.
Hiatt, American journal of human genetics 2023 - GeneRIF: Deleterious, protein-altering variants in the transcriptional coregulator ZMYM3 in 27 individuals with a neurodevelopmental delay phenotype.
- Evolving evidence on a link between the ZMYM3 exceptionally long GA-STR and human cognition.
Afshar, Scientific reports 2020 - GeneRIF: Evolving evidence on a link between the ZMYM3 exceptionally long GA-STR and human cognition.
- Aicardi-Goutières Syndrome associated mutations of RNase H2B impair its interaction with ZMYM3 and the CoREST histone-modifying complex.
Shapson-Coe, PloS one 2019 - GeneRIF: AGS mutations in this cluster impair the interaction of RNase H2 with several members of the CoREST chromatin-silencing complex that include the histone deacetylase HDAC2 and the demethylase KDM1A, the transcriptional regulators RCOR1 and GTFII-I as well as ZMYM3, an MYM-type zinc finger protein.
- Disease-only alleles at the extreme ends of the human ZMYM3 exceptionally long 5' UTR short tandem repeat in bipolar disorder: A pilot study.
Alizadeh, Journal of affective disorders 2019 (PubMed)- GeneRIF: The ZMYM3 "exceptionally long" 5' UTR STR findings may alter our perspective of disease pathogenesis in psychiatric disorders, and set an example in which the low frequency alleles at the extreme short and long ends of the human STRs are, at least in part, a result of natural selection against these alleles and their unambiguous link to major human disorders.
- Skewing of the genetic architecture at the ZMYM3 human-specific 5' UTR short tandem repeat in schizophrenia.
Alizadeh, Molecular genetics and genomics : MGG 2018 (PubMed)- GeneRIF: Data found skewing of the genetic architecture at the ZMYM3 short tandem repeats (STR) in schizophrenia. Further, results found a bell-shaped distribution of alleles and selection against alleles at the extreme ends of this STR.
NP_001263010 without children, isoform E from Drosophila melanogaster
Aligns to 1530:1691 / 1702 (9.5%), covers 99.4% of PF12012, 218.7 bits
- The zinc-finger proteins WOC and ROW play distinct functions within the HP1c transcription complex.
Di, Biochimica et biophysica acta. Gene regulatory mechanisms 2020 (PubMed)- GeneRIF: The results suggest that WOC and ROW play distinct functions within the HP1c complex, supporting a model in which WOC interacts with Dsk2 and recruits it to the complex, while ROW mediates binding of the complex to chromatin.
- Without children is required for Stat-mediated zfh1 transcription and for germline stem cell differentiation.
Maimon, Development (Cambridge, England) 2014 - GeneRIF: Without children is required for Stat-mediated zfh1 transcription and for germline stem cell differentiation.
- Drosophila HP1c is regulated by an auto-regulatory feedback loop through its binding partner Woc.
Abel, PloS one 2009 - GeneRIF: interaction between HP1c and Woc constitutes a transcriptional feedback loop that operates to balance the concentration of HP1c within the cell
- Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and Relative-of-WOC to regulate gene expression.
Font-Burgada, Genes & development 2008 - GeneRIF: HP1c, WOC, and ROW regulate a common gene expression program that, in part, is executed in the context of the nervous system.
- Woc gene mutation causes 20E-dependent alpha-tubulin detyrosination in Drosophila melanogaster.
Jin, Archives of insect biochemistry and physiology 2005 (PubMed)- GeneRIF: Woc gene mutation causes 20E-dependent alpha-tubulin detyrosination in Drosophila melanogaster.
- The putative Drosophila transcription factor woc is required to prevent telomeric fusions.
Raffa, Molecular cell 2005 (PubMed)- GeneRIF: Data show that mutations in the woc gene cause frequent telomeric fusions in Drosophila brain cells.
QRIC1_HUMAN / Q2TAL8 Transcriptional regulator QRICH1; Glutamine-rich protein 1 from Homo sapiens (Human) (see 4 papers)
NP_001307513 transcriptional regulator QRICH1 from Homo sapiens
Aligns to 599:759 / 776 (20.7%), covers 98.8% of PF12012, 213.1 bits
- function: Transcriptional regulator that acts as a mediator of the integrated stress response (ISR) through transcriptional control of protein homeostasis under conditions of ER stress (PubMed:33384352). Controls the outcome of the unfolded protein response (UPR) which is an ER-stress response pathway (PubMed:33384352). ER stress induces QRICH1 translation by a ribosome translation re-initiation mechanism in response to EIF2S1/eIF-2-alpha phosphorylation, and stress-induced QRICH1 regulates a transcriptional program associated with protein translation, protein secretion-mediated proteotoxicity and cell death during the terminal UPR (PubMed:33384352). May cooperate with ATF4 transcription factor signaling to regulate ER homeostasis which is critical for cell viability (PubMed:33384352). Up-regulates CASP3/caspase-3 activity in epithelial cells under ER stress. Central regulator of proteotoxicity associated with ER stress-mediated inflammatory diseases in the intestines and liver (PubMed:33384352). Involved in chondrocyte hypertrophy, a process required for normal longitudinal bone growth (PubMed:30281152).
- Novel Apoptotic Mediators Identified by Conservation of Vertebrate Caspase Targets.
Gubina, Biomolecules 2020 - “...3 ( PSMC3 ) PRS6A P17980 DILDPALL Stab glutamine rich 1 ( QRICH1 ) QRIC1 Q2TAL8 LTVDSAHL Stab RNA binding motif protein 22 ( RBM22 ) RBM22 Q9NW64 SNSDGTRP Stab RNA binding motif protein 39 ( RBM39 ) RBM39 Q14498 ERTDASSA Stab replication factor C subunit...”
- TCTEX1D4 interactome in human testis: unraveling the function of dynein light chain in spermatozoa
Freitas, Omics : a journal of integrative biology 2014 - “...KYVFF RKVNW RVAW - 2 1 1 1 2 Q96GD0 22cen-q12.3 - Q2TAL8 3p21.31 All isoforms (2) Q96S59 6p23 - Q9BQ04 11q13 - Q96T21 9q22.2 - - - RMIHF - LNVAW 1 Q9HCE7 7q22.1...”
- QRICH1 suppresses pediatric T-cell acute lymphoblastic leukemia by inhibiting GRP78.
Zhao, Cell death & disease 2024 - GeneRIF: QRICH1 suppresses pediatric T-cell acute lymphoblastic leukemia by inhibiting GRP78.
- QRICH1 variants in Ververi-Brady syndrome-delineation of the genotypic and phenotypic spectrum.
Föhrenbach, Clinical genetics 2021 (PubMed)- GeneRIF: QRICH1 variants in Ververi-Brady syndrome-delineation of the genotypic and phenotypic spectrum.
- QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis.
You, Science (New York, N.Y.) 2021 - GeneRIF: QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis.
- A case of Ververi-Brady syndrome due to QRICH1 loss of function and the literature review.
Baruch, American journal of medical genetics. Part A 2021 (PubMed)- GeneRIF: A case of Ververi-Brady syndrome due to QRICH1 loss of function and the literature review.
- QRICH1 mutations cause a chondrodysplasia with developmental delay.
Lui, Clinical genetics 2019 - GeneRIF: Our findings indicate that QRICH1 mutations cause not only developmental delay but also a chondrodysplasia characterized by diminished linear growth and abnormal growth plate morphology due to impaired growth plate chondrocyte hypertrophic differentiation.
- Phenotypic spectrum associated with de novo mutations in QRICH1 gene.
Ververi, Clinical genetics 2018 (PubMed)- GeneRIF: Despite their small number, the patients had a relatively consistent pattern of clinical features suggesting the presence of a QRICH1-associated phenotype. LoF mutations in QRICH1 are suggested as a novel cause of developmental delay.
QRIC1_MOUSE / Q3UA37 Transcriptional regulator QRICH1; Glutamine-rich protein 1 from Mus musculus (Mouse) (see 2 papers)
Aligns to 600:760 / 777 (20.7%), covers 98.8% of PF12012, 211.8 bits
- function: Transcriptional regulator that acts as a mediator of the integrated stress response (ISR) through transcriptional control of protein homeostasis under conditions of ER stress (PubMed:33384352). Controls the outcome of the unfolded protein response (UPR), an ER- stress response pathway that either promotes recovery of ER homeostasis and cell survival, or triggers the terminal UPR which elicits programmed cell death when ER stress is prolonged and unresolved (PubMed:33384352). ER stress induces QRICH1 translation by a ribosome translation re-initiation mechanism in response to EIF2S1/eIF-2-alpha phosphorylation, and stress-induced QRICH1 regulates a transcriptional program associated with protein translation, protein secretion-mediated proteotoxicity and cell death during the terminal UPR (By similarity). May cooperate with ATF4 transcription factor signaling to regulate ER homeostasis which is critical for cell viability (By similarity). Up- regulates CASP3/caspase-3 activity in epithelial cells under ER stress. Central regulator of proteotoxicity associated with ER stress-mediated inflammatory diseases in the intestines and liver (PubMed:33384352). Involved in chondrocyte hypertrophy, a process required for normal longitudinal bone growth (PubMed:30281152).
- Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure.
Mulcahy, Journal of proteome research 2020 - “...0.046 17 Ctc1 Q5SUQ9 (6/6) 0.24 0.013 8 Pctp P53808 (6/6) 0.24 0.040 2 Qrich1 Q3UA37 (6/6) 0.24 0.001 11 Gc P21614 (5/6) 0.24 0.031 19 Tada1 Q99LM9 (5/6) 0.24 0.038 3 Hmgcs1 Q8JZK9 (5/6) 0.23 0.049 21 Setd6 Q9CWY3 (6/6) 0.23 0.025 2 Slc16a11 Q5NC32...”
XP_006511872 transcriptional regulator QRICH1 isoform X1 from Mus musculus
Aligns to 600:760 / 777 (20.7%), covers 98.8% of PF12012, 211.8 bits
ZMYM2_MOUSE / Q9CU65 Zinc finger MYM-type protein 2; Zinc finger protein 198 from Mus musculus (Mouse) (see paper)
Aligns to 1191:1359 / 1376 (12.3%), covers 99.4% of PF12012, 204.4 bits
- function: Involved in the negative regulation of transcription.
subunit: Can form homodimers (By similarity). May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. Interacts with FOXP1 and FOXP2 (By similarity).
XP_011243522 zinc finger MYM-type protein 2 isoform X1 from Mus musculus
Aligns to 1217:1385 / 1402 (12.1%), covers 99.4% of PF12012, 204.4 bits
ZMYM2_HUMAN / Q9UBW7 Zinc finger MYM-type protein 2; Fused in myeloproliferative disorders protein; Rearranged in atypical myeloproliferative disorder protein; Zinc finger protein 198 from Homo sapiens (Human) (see 3 papers)
Aligns to 1192:1360 / 1377 (12.3%), covers 99.4% of PF12012, 204.2 bits
- function: Involved in the negative regulation of transcription.
subunit: Can form homodimers (PubMed:32891193). May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. Interacts with FOXP1 and FOXP2 (PubMed:32891193). - Proteomics identifies differentially expressed proteins in glioblastoma U87 cells treated with hederagenin.
Zhang, Proteome science 2023 - “...Methyltransferase-like protein 7B UP 1.204628949 0.02206929 O60291 MGRN1 E3 ubiquitin-protein ligase MGRN1 DOWN 0.833180568 0.00804476 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 DOWN 0.823154057 0.03109416 Q9NUE0 ZDHHC18 Palmitoyltransferase ZDHHC18 DOWN 0.823154057 0.03070765 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 DOWN 0.822600243 0.02781847 P54252 ATXN3 Ataxin-3 DOWN 0.822546338...”
- Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets.
Qiu, Clinical proteomics 2023 - “...Q9Y3R5 DOP1B Protein dopey-2 DOP2_HUMAN 7.047271208 132.2635031 0.009017667 0.067617556 390.7667237 51,684.17579 455.894511 53,527.82245 145.6301596 43,456.97949 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 ZMYM2_HUMAN 6.288898031 78.18923194 0.004630235 0.050678673 529.169983 41,375.39454 4620.847708 40,939.30145 9149.269534 26,504.5089 P12532 CKMT1A Creatine kinase U-type, mitochondrial KCRU_HUMAN 5.738345477 53.38436902 0.001805234 0.030247698 16,038.71924 856,216.9063...”
- Screening and identification of endometrial proteins as novel potential biomarkers for repeated implantation failure.
Wang, PeerJ 2021 - “...NSL complex subunit 2 1.54 P02647 APOA1 Apolipoprotein A-I 1.53 P48509 CD151 CD151 antigen 1.53 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1.52 Q96LD8 SENP8 Sentrin-specific protease 8 1.52 P35237 SPB6 Serpin B6 1.52 Q5HYK9 ZN667 Zinc finger protein 667 1.51 Q99735 MGST2 Microsomal glutathione S-transferase...”
- Proteomic analysis of ubiquitin-like posttranslational modifications induced by the adenovirus E4-ORF3 protein
Sohn, Journal of virology 2015 - “...Small ubiquitin-related modifier 2 Chromatin target of PRMT1 protein Q9UBW7 P61956 Q9Y3Y2 ZMYM2 SUMO2 CHTOP 1 1 1 3.8 3.8 3.4 RNF168 RING finger protein 168...”
- Quantitative gingival crevicular fluid proteome in health and periodontal disease using stable isotope chemistries and mass spectrometry
Carneiro, Journal of clinical periodontology 2014 - “...V-type proton ATPase 116 kDa subunit a isoform 2 Q8NFY9 Kelch repeat/BTB domain-containing protein 8 Q9UBW7 Zinc finger MYM-type protein 2 A4D0S4 Laminin subunit beta-4 Q5VU65 Nuclear pore membrane glycoprotein 210-like Q9NS15 Latent-transforming growth factor -binding protein 3 Q9H7F0 Cation-transporting ATPase 13A3 O00562 Membrane-associated phosphatidylinositol transfer...”
- Proteomics approaches for identification of tumor relevant protein targets in pulmonary squamous cell carcinoma by 2D-DIGE-MS.
Lihong, PloS one 2014 - “...FGB 64/5.9 56577/9.3 48 0.02 2.14 P08670 Vimentin 142 VIM 60/4.4 53676/4.9 49 0.045 2.93 Q9UBW7 Zinc finger MYM-type protein 2 67 ZMYM2 60/6.7 158403/5.9 Q14532 Keratin, type I cuticular 59 KRT32 51769/4.7 50 0.03 2.22 P50454 Serpin H1 57 SERPINH1 60/8 46525/9.3 51 0.0066 2.01...”
- A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics
Van, International journal of biological sciences 2010 - “...RIP140 to act as a repressor for its target Oct4 150 - O95551 TTRAP Unknown Q9UBW7 ZNF198 K963 SUMOylation of ZNF198 is important for PML body formation 151 + Q9Y4E5 ZNF451 NDSM ZNF451 exerts its effects via SUMOylation and trafficking of transcription regulators between promyelocytic leukemia...”
XP_026564670 zinc finger MYM-type protein 2 isoform X1 from Pseudonaja textilis
Aligns to 1138:1307 / 1324 (12.8%), covers 99.4% of PF12012, 196.5 bits
F1MNA8 Zinc finger MYM-type containing 2 from Bos taurus
Aligns to 1190:1313 / 1314 (9.4%), covers 71.6% of PF12012, 138.3 bits
- Comparison of nanotube-protein corona composition in cell culture media
Shannahan, Small (Weinheim an der Bergstrasse, Germany) 2013 - “...6,296,211 F1MI56 ANKRD17 Ankyrin repeat domain-containing protein 17 6,637,200 E1BC55 LOC533883 Uncharacterized protein KIAA1671 6,824,667 F1MNA8 ZMYM2 Zinc finger MYM-type protein 2 7,565,700 F1MGK5 PTPRZ1 Receptor-type tyrosine-protein phosphatase zeta 7,929,133 F1MYC9 SPTBN1 Spectrin beta chain, brain 1 8,029,370 E1BM04 TBKBP1 TANK-binding kinase 1-binding protein 1 8,685,600...”
NP_001273965 uncharacterized protein KIAA1958 isoform a from Homo sapiens
Aligns to 560:715 / 744 (21.0%), covers 98.8% of PF12012, 137.2 bits
Q8N8K9 Uncharacterized protein KIAA1958 from Homo sapiens
Aligns to 532:687 / 716 (21.8%), covers 98.8% of PF12012, 137.1 bits
B7PYR4 Woc protein, putative from Ixodes scapularis
2 alignments in 796:909 / 924 (12.3%), covering up to 38.3% of PF12012, 112.1 bits
NP_001120376 uncharacterized protein LOC100145450 from Xenopus tropicalis
Aligns to 385:538 / 679 (22.7%), covers 94.4% of PF12012, 64.4 bits
- Crypton transposons: identification of new diverse families and ancient domestication events
Kojima, Mobile DNA 2011 - “...3 Molecular fossils of Cryptons in chordates Species Accession numbers Danio rerio BX530066* Xenopus tropicalis NP_001120376, AAMC01135377*, AAMC01082917* Callorhinchus milii AAVX01521991*, AAVX01068049*, AAVX01132927* Ciona intestinalis XP_002124034, XP_002125964 Ciona savignyi AACT01002283*, AACT01041791* Halocynthia roretzi BAB40645 Oikopleura dioica CBY34656 Branchiostoma floridae XP_00260067, XP_002595788, XP_002613958, XP_002613959, XP_002587732, XP_002607491 *Nucleotide...”
XP_002125964 uncharacterized protein LOC100186276 from Ciona intestinalis
Aligns to 519:656 / 1007 (13.7%), covers 94.4% of PF12012, 52.4 bits
- Crypton transposons: identification of new diverse families and ancient domestication events
Kojima, Mobile DNA 2011 - “...rerio BX530066* Xenopus tropicalis NP_001120376, AAMC01135377*, AAMC01082917* Callorhinchus milii AAVX01521991*, AAVX01068049*, AAVX01132927* Ciona intestinalis XP_002124034, XP_002125964 Ciona savignyi AACT01002283*, AACT01041791* Halocynthia roretzi BAB40645 Oikopleura dioica CBY34656 Branchiostoma floridae XP_00260067, XP_002595788, XP_002613958, XP_002613959, XP_002587732, XP_002607491 *Nucleotide sequences including Crypton fragments. However, two similar sequences (ABQF01015803 from the...”
- “...A representative of DUF3504 from Halocynthia roretzi (BAB40645) has orthologs in other tunicates: Ciona intestinalis (XP_002125964), Ciona savignyi (AACT01002283 and AACT10141791) and Oikopleura dioica (CBY34656). They could also represent a domestication event of Crypton . Another representative (YP_025778) is coded in the mitochondrion of the green...”
LOC108785573 uncharacterized protein LOC108785573 from Nanorana parkeri
Aligns to 260:423 / 827 (19.8%), covers 96.3% of PF12012, 44.4 bits
Or search for genetic data about PF12012 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory