Family Search for PF12051 (DUF3533)
PF12051 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
SNG1_YEAST / P46950 Nitrosoguanidine resistance protein SNG1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
NP_011713 Sng1p from Saccharomyces cerevisiae S288C
YGR197C Protein involved in nitrosoguanidine (MNNG) resistance; expression is regulated by transcription factors involved in multidrug resistance (RefSeq) from Saccharomyces cerevisiae
Aligns to 112:498 / 547 (70.7%), covers 99.7% of PF12051, 430.7 bits
- function: May function as a N-methyl-N'nitro-N-nitrosoguanidine (MNNG) export permease
- Sng1 associates with Nce102 to regulate the yeast Pkh-Ypk signalling module in response to sphingolipid status.
García-Marqués, Biochimica et biophysica acta 2016 (PubMed)- GeneRIF: Data indicate that mutant nce102 sng1 cells show features of impaired Pkh/Ypk signalling, including increased reactive oxygen species accumulation.
- Overexpression of SNG1 causes 6-azauracil resistance in Saccharomyces cerevisiae.
García-López, Current genetics 2010 (PubMed)- GeneRIF: They have identified SNG1 as a multicopy suppressor of the 6AU(S) growth defect caused by the S. cerevisiae rpb1 mutant.
- Rapid response of the yeast plasma membrane proteome to salt stress
Szopinska, Molecular & cellular proteomics : MCP 2011 - “...Q08760 PM PM PM PM PM PM PM PM P11972 P39926 P32867 P32568 P46950 P39928 P40485 P54867 PM and END P33338 PM and END P32790 PM PM PM PM and ER PM and NUC PM and...”
- Rational and evolutionary engineering of Saccharomyces cerevisiae for production of dicarboxylic acids from lignocellulosic biomass and exploring genetic mechanisms of the yeast tolerance to the biomass hydrolysate
Stovicek, Biotechnology for biofuels and bioproducts 2022 - “...if homozygous. Corresponding outcomes of each mutation on the protein are indicated. a SNG1 / YGR197C . b FIT3 / YOR383C . c FZF1 / YGL254W . Fig. S8. Results of the mutations found in the engineered xylose pathway genes. a PsSUT1 : Alignment of the...”
- Different Toxicity Mechanisms for Citrinin and Ochratoxin A Revealed by Transcriptomic Analysis in Yeast.
Vanacloig-Pedros, Toxins 2016 - “...mitochondrial glutathione oxidoreductase YGR281W YOR1 6.4 2.16 10 3 Plasma membrane ATP-binding cassette (ABC) transporter YGR197C SNG1 6.3 3.47 10 7 Protein involved in resistance to nitrosoguanidine and 6-azauracil YNL155W CUZ1 6.1 5.38 10 3 Protein with a role in the ubiquitin-proteasome pathway YAL054C ACS1 6.1...”
- “...protease YEL048C TCA17 9.6 2.14 10 7 Component of transport protein particle (TRAPP) complex II YGR197C SNG1 9.2 7.32 10 8 Protein involved in resistance to nitrosoguanidine and 6-azauracil YJR047C ANB1 9.2 1.29 10 6 Translation elongation factor eIF-5A YKL093W MBR1 9.0 3.41 10 5 Protein...”
- Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks
Brion, BMC genomics 2013 - “...membrane; transcription of TPO2 is regulated by Haa1p; member of the major facilitator superfamily SNG1 YGR197C chr15:639 5,24 YRR1 1 Protein involved in nitrosoguanidine (MNNG) resistance; expression is regulated by transcription factors involved in multidrug resistance ERC1 YHR032W chr2:624 4,09 unknown 13 Member of the multi-drug...”
- Rapid response of the yeast plasma membrane proteome to salt stress
Szopinska, Molecular & cellular proteomics : MCP 2011 - “...86 YKL051W 77 YDR011W YMR266W Rsn1 76 85 YOR049C 75 YGR197C YNL180C 74 84 YIL118W 73 YIL147C YNL090W 72 83 YPR165W 71 Sst2p Sso2p Sso1p Snq2p Sng1p Sln1p Slm1p...”
- Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol
Pan, BMC medical genomics 2008 - “...in export of proteins YNL231C PDR16 6.1 3.54 10 -4 Pdr17p homolog controlled by Pdr1p YGR197C SNG1 4.1 3.7 10 -4 Protein involved in nitrosoguanidine resistance YOR018W ROD1 2.8 8.67 10 -3 Membrane protein, resistance to o -dinitrobenzene Including the transcription factors discussed above involved in...”
- New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system
Le, Molecular and cellular biology 2002 - “...FLR1 3.7 2 YPL088W YPL088W 2.5 5.2 YLR179C 2 1.7 YGR197C SNG1 5 3.1 YDR011W SNQ2 3.2 1.5 YBR151W APD1 2.6 2.1 YMR008C PLB1 1.8 1.7 YGR035C YGR035C YMR102C...”
YJY5_YEAST / P47090 Uncharacterized endoplasmic reticulum membrane protein YJR015W from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
YJR015W Putative protein of unknown function; localizes to the endoplasmic reticulum and cytoplasm; predicted to encode a membrane transporter based on phylogenetic analysis; YJR015W is a non-essential gene (RefSeq) from Saccharomyces cerevisiae
Aligns to 93:486 / 510 (77.3%), covers 99.2% of PF12051, 405.2 bits
- Transportome-wide engineering of Saccharomyces cerevisiae
Wang, Metabolic engineering 2021 - “...QDR2 disruption, and the remaining four strains harbored disruption of either QDR1 , APL1 , YJR015W , or ZRT2 ( Fig. S14b ). The disruption of QDR2 , QDR1 , and APL1 all increased the intracellular betaxanthins amount (> 120%, Fig. 6 b) and the cellular...”
- A Systematic Protein Turnover Map for Decoding Protein Degradation
Christiano, Cell reports 2020 - “...et al., 2014 ; Jaenicke et al., 2011 ) and 2 newly identified short-lived proteins (Yjr015w and Ysp2; Figures 3B and 3E ) that were stabilized in several mutants of the Hrd1 complex and in cells expressing a catalytically inactive version of Hrd1 (C399S) ( Figure...”
- “...Jaenicke et al., 2011 ; Kelly et al., 1995 ; Li and Kaplan, 1996 ), YJR015W encodes a protein with strong homology to human ABC transporters mediating the cellular efflux of sterols (HHPred; Figure S4A ), and Ysp2/Ltc4 belongs to the recently discovered family of StART-domain...”
- Monitoring Protein Dynamics in Protein O-Mannosyltransferase Mutants In Vivo by Tandem Fluorescent Protein Timers.
Castells-Ballester, Molecules (Basel, Switzerland) 2018 - “...total of 39 individual proteins was clearly influenced ( Figure 2 ac). Among those, Nis1, YJR015W, Mnl2, Sec12, Emp24, Vtc1, Mns1, Prm5 and Pmt3 show negative mCherry/sfGFP -score values, indicating increased protein abundance and/or stability in pmt1 , pmt2 and pmt4 . These proteins are involved...”
- Widespread Cumulative Influence of Small Effect Size Mutations on Yeast Quantitative Traits
Hua, Cell systems 2018 - “...YLR050C, YOL137W, YOL107W, YDL018C, YDR307W, YDR297W, YNL190W, YDR503C, YBR177C, YGR266W, YER019C-A, YLR034C, YOR322C, YGR260W, YDR349C, YJR015W, YPL246C, YMR058W, YBR290W, YLL023C, YDR205W, YHR123W, YJL024C, YJL212C, YLR292C, YPL207W, YKR027W, YIL076W, YBR288C, YJL183W, YKL008C, YJL207C, YML067C, YGR089W, YOR291W, YNL111C, YEL043W, YPL234C, YLR056W, YKL096W-A, YGR157W, YHR060W, YLR039C, YHR079C DATA AND...”
- Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species
Li, Genome biology and evolution 2017 - “...species-specific feedback regulation on mRNA levels. Besides the mitochondrial genes, membrane proteins ( YLR046C , YJR015W , THI73 ), cell wall ( TIR3 , CWP1 ) and mating-related genes ( PRM4 , AXL1 , SIR1 ) were also found in the 22C-divergent group. The 21 genes...”
- Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough
Holmes, PLoS genetics 2015 - “...appear to be inhibited by convergent or tandem readthrough, or by intergenic transcription. Of these, YJR015W is seemingly down-regulated due to transcription changes over a local chromosome domain, since both upstream tandem genes are also down-regulated, while FMP48 and TPO4 are down-regulated by unknown mechanisms. 10.1371/journal.pgen.1005735.t001...”
- “...Y Y THO1 -3.44 C Y HXT1 -3.34 T Y d PTC7 -3.12 C Y YJR015W c -2.92 C CYC1 -2.80 C Y Y YPR172W -2.79 C Y TPO2 -2.70 C Y HSP30 -2.51 C Y FMP48 -2.42 C TPO1 -2.36 T Y d Y d...”
- High-content screening of yeast mutant libraries by shotgun lipidomics
Tarasov, Molecular bioSystems 2014 (PubMed)- “...of genes with unknown function YBR141C and YJR015W, and the transcription factor KAR4 precipitated distinct lipid metabolic phenotypes. These results...”
- “...genes with previously unknown function YBR141C and YJR015W, and the transcription factor KAR4 precipitates distinct lipid metabolic phenotypes. These results...”
- Genetic influences on translation in yeast
Albert, PLoS genetics 2014 - “...(2) YJL213W 3.41 9.4E-10 1.26 2.4E-05 2.15 1.2E-04 YJL132W 1.37 3.7E-07 0.67 0.03 0.70 3.1E-03 YJR015W 4.16 4.2E-13 1.19 3.2E-05 5.35 1.5E-32 (3) YJR072C ( NPA3 ) 2.14 <2e-16 1.46 3.4E-26 0.68 1.6E-07 YKL163W ( PIR3 ) 1.19 1.6E-06 0.07 0.6 1.26 9.8E-08 YKL095W ( YJU2...”
- “...dubious ORFs were not included in our analyses of nonsense SNPs so that YDR133C and YJR015W were not included in those analyses. Cis and trans contributions to translation The overall contribution of cis vs. trans acting variants to gene expression variation can be determined by comparing...”
- More
SNG3 putative uncharacterized protein from Candida albicans (see paper)
Aligns to 181:571 / 609 (64.2%), covers 99.7% of PF12051, 346.0 bits
- CharProtDB CGD description: Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; shows colony morphology-related gene regulation by Ssn6p
SCHCODRAFT_27314 uncharacterized protein from Schizophyllum commune H4-8
Aligns to 58:425 / 455 (80.9%), covers 99.2% of PF12051, 310.4 bits
- Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development
Plaza, BMC genomics 2014 - “...conidiation transcription factor FlbC CC1G_11894 SCHCODRAFT_68168 LACBIDRAFT_296675 bas1, putative CC1G_05329 SCHCODRAFT_85265 LACBIDRAFT_300118 Hypothetical protein CC1G_09061 SCHCODRAFT_27314 LACBIDRAFT_308057 MNNG and nitrosoguanidine resistance protein CC1G_02380 SCHCODRAFT_77933 LACBIDRAFT_314347 Clavaminate synthase-like protein CC1G_05793 SCHCODRAFT_85265 LACBIDRAFT_300118 Hypothetical protein CC1G_14014 SCHCODRAFT_49922 LACBIDRAFT_248655 O-methylsterigmatocystin oxidoreductase CC1G_11136 SCHCODRAFT_232299 LACBIDRAFT_294457 Hypothetical protein CC1G_00780 SCHCODRAFT_106836 LACBIDRAFT_305061...”
AGABI2DRAFT_119143 hypothetical protein from Agaricus bisporus var. bisporus H97
Aligns to 65:431 / 467 (78.6%), covers 99.2% of PF12051, 298.4 bits
CC1G_09061 hypothetical protein from Coprinopsis cinerea okayama7#130
Aligns to 47:417 / 447 (83.0%), covers 99.2% of PF12051, 290.9 bits
LACBIDRAFT_308057 hypothetical protein from Laccaria bicolor S238N-H82
Aligns to 59:425 / 453 (81.0%), covers 98.9% of PF12051, 289.5 bits
Rv0180c PROBABLE CONSERVED TRANSMEMBRANE PROTEIN (NCBI) from Mycobacterium tuberculosis H37Rv
NP_214694 transmembrane protein from Mycobacterium tuberculosis H37Rv
Aligns to 30:404 / 452 (83.0%), covers 92.8% of PF12051, 102.6 bits
- Understanding the Genetic Diversity of Mycobacterium africanum Using Phylogenetics and Population Genomics Approaches
Balamurugan, Frontiers in genetics 2022 - “...also in agreement with our findings of core-L5.2.2-specific SNPs (#73) with an exception of Ala189Glu (Rv0180c). Additional 12 SNPs [Tyr126* (Rv0217c), Val174Leu (Rv0809), Ala69Glu (Rv0848), Phe249Phe (Rv0930), Arg302Arg (Rv1188), and Cys34Phe (Rv1317c), upstream SNP -3721 (Rv1749c), Asn372Ser (Rv2874), Gly18Asp (Rv3251c), Asn234Asn (Rv3534c), Ser84Gly (Rv3608c), and Ile150Thr...”
- Rv0180c contributes to Mycobacterium tuberculosis cell shape and to infectivity in mice and macrophages
Payros, PLoS pathogens 2021 - “...Leprae Biology and Life Sciences Cell Biology Cellular Structures and Organelles Cell Membranes Membrane Proteins Rv0180c contributes to Mycobacterium tuberculosis cell shape and to infectivity in mice and macrophages Rv0180c and Mycobacterium tuberculosis infectivity Payros Delphine Conceptualization Data curation Formal analysis Investigation Methodology Writing original draft...”
- “...Beside several genes encoding known virulence factors, we found three new candidates not previously described: rv0180c , rv1779c and rv1592c . We focused on the gene, rv0180c , of unknown function. First, we found that deletion of rv0180c in M . tuberculosis substantially reduced the initiation...”
- Whole genome sequencing, analyses of drug resistance-conferring mutations, and correlation with transmission of Mycobacterium tuberculosis carrying katG-S315T in Hanoi, Vietnam
Hang, Scientific reports 2019 - “...purT, recC, relE, rfe, rimJ, rpfA, rpsD, Rv0057, Rv0060, Rv0074, Rv0095c, Rv0111, Rv0133, Rv0149, Rv0178, Rv0180c, Rv0188, Rv0192, Rv0193c, Rv0203, Rv0218, Rv0238, Rv0257, Rv0278c, Rv0302, Rv0323c, Rv0339c, Rv0367c, Rv0378, Rv0386, Rv0412c, Rv0457c, Rv0474, Rv0477, Rv0492c, Rv0537c, Rv0538, Rv0575c, Rv0584, Rv0647c, Rv0650, Rv0658c, Rv0686, Rv0696, Rv0740, Rv0790c,...”
- Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada
Tyler, PloS one 2017 - “...allele MIRU C Variant allele MIRU D 142246 oxcA T 0 0 61 2 212244 Rv0180c A 5 0 62 140 234477 Rv0197 G 5 14 62 140 707337 Rv0613c A 0 14 0 0 1037911 pstA1 T 5 14 62 140 1989043 cut1 C 4...”
- “...this hypothesis. Also detected only in MIRU cluster B was a premature stop mutation in Rv0180c at the third amino acid of the coding sequenceeffectively eliminating transcription of this molecule. This gene encodes a previously described probable transmembrane protein that is involved in interaction with and...”
- Molecular analysis of Rv0679c and Rv0180c genes of Mycobacterium tuberculosis from clinical isolates of pulmonary tuberculosis
Rupa, Indian journal of medical microbiology 2016 (PubMed)- “...and Rv0180c genes of Mycobacterium tuberculosis from clinical isolates of pulmonary tuberculosis Indian Journal of Medical Microbiology Journal fla 02550857 34...”
- “...KSR Context: Two novel proteins/genes Rv0679c and Rv0180c of Mycobacterium tuberculosis (MTB) H37Rv were classified as a hypothetical membrane and transmembrane...”
- Characterisation of the Mycobacterium tuberculosis alternative sigma factor SigG: its operon and regulon
Gaudion, Tuberculosis (Edinburgh, Scotland) 2013 - “...transcript could be detected between the 3 end of lprO and 300bp upstream of the Rv0180c stop codon. Therefore, the sigG operon consists of sigG , Rv0181c and Rv0180c , while the lprO transcript starts from a promoter internal to Rv0180c . 3.2 Determining sigG transcriptional...”
- “...found substantial over-expression of sigG when transformed into wild-type M.tuberculosis H37Rv. Expression of Rv0181c and Rv0180c was unaffected in this strain ( Figure2 C), indicating that the genomic sigG operon was not over-expressed. Further RT-PCR analysis found that this transcript started within the vector sequence (data...”
- The Mycobacterium tuberculosis membrane protein Rv0180c: Evaluation of peptide sequences implicated in mycobacterial invasion of two human cell lines
Cáceres, Peptides 2011 (PubMed)- “...biological activity of the conserved hypothetical protein Rv0180c from M. tuberculosis. Bioinformatics analyses indicated that Rv0180c contains a signal...”
- “...motif. PCR analyses showed the presence of the Rv0180c gene in strains from the M. tuberculosis complex; but transcription was not detected in Mycobacterium...”
- SigG does not control gene expression in response to DNA damage in Mycobacterium tuberculosis H37Rv
Smollett, Journal of bacteriology 2011 - “...downstream of sigG, but unchanged levels of expression of Rv0180c (data not shown). Isolate sigG1 was used for microarray analysis, which revealed a defect in...”
- More
- The Mycobacterium tuberculosis membrane protein Rv0180c: Evaluation of peptide sequences implicated in mycobacterial invasion of two human cell lines.
Cáceres, Peptides 2011 (PubMed)- GeneRIF: The Mycobacterium tuberculosis membrane protein Rv0180c: Evaluation of peptide sequences implicated in mycobacterial invasion of two human cell lines
BA3114 membrane protein, putative (NCBI ptt file) from Bacillus anthracis str. Ames
Aligns to 9:372 / 393 (92.6%), covers 92.6% of PF12051, 93.3 bits
MAB_4762 hypothetical protein (RefSeq) from Mycobacterium abscessus ATCC 19977
Aligns to 23:209 / 648 (28.9%), covers 46.0% of PF12051, 47.4 bits
P32399 Uncharacterized protein YhgE from Bacillus subtilis (strain 168)
BSU10160 putative methyl-accepting protein (RefSeq) from Bacillus subtilis subsp. subtilis str. 168
Aligns to 17:199 / 775 (23.6%), covers 42.6% of PF12051, 45.8 bits
- A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum, Proteome science 2011 - “...>0.99 0.955961 370 P24327 0.000234 >0.99 <0.000001 <0.000001 1692 P37494 0.000244 >0.99 >0.99 0.932235 241 P32399 0.000267 >0.99 >0.99 0.045315 388 P39912 0.000327 >0.99 >0.99 0.002252 878 P42971 0.000473 >0.99 >0.99 0.032372 475 P21472 0.000594 >0.99 >0.99 0.99 357 P21464 0.000613 >0.99 <0.000001 0.000473 1272 P71021...”
- “...>0.99 0.041718 1113 O32047 0.178170 >0.99 <0.000001 0.042466 665 P12042 0.002703 >0.99 >0.99 0.043005 699 P32399 0.000267 >0.99 >0.99 0.045315 388 P08066 0.105333 >0.99 0.000002 0.048719 644 P40779 0.083444 >0.99 0.053914 0.049061 409 Exemplary shown for experiment A, the table displays all significantly expressed proteins (...”
- High levels of DegU-P activate an Esat-6-like secretion system in Bacillus subtilis
Baptista, PloS one 2013 - “...and EsaA paralogues that exhibit the same predicted conserved domains [27] ; these are YhgE (BSU10160) for B. subtilis and NWMN_2542 and NWMN_2276 in S. aureus strain Newman. It may happen that, in contrast to YhgE, NWMN_2542 and/or NWMN_2276 can compensate the lack of EsaA function....”
A4UX86 HorC homolog from Loigolactobacillus backii
Aligns to 12:398 / 420 (92.1%), covers 97.1% of PF12051, 42.3 bits
LSA1261 Putative autotransport protein (NCBI) from Lactobacillus sakei subsp. sakei 23K
Aligns to 20:222 / 915 (22.2%), covers 43.6% of PF12051, 42.3 bits
- Global transcriptome response in Lactobacillus sakei during growth on ribose
McLeod, BMC microbiology 2011 - “...protein, hemolysin III related LSA1088 lsa1088 Putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits 0.5 LSA1261 lsa1261 Putative autotransport protein 0.5 LSA1340 lsa1340 Putative transport protein -0.7 LSA1366 lsa1366 Putative ABC exporter, ATP-binding subunit -0.8 -1.0 LSA1367 lsa1367 Putative ABC exporter, membrane-spanning/permease subunit -0.8 -0.5 -0.8...”
NCgl1576 YhgE/Pip domain-containing protein from Corynebacterium glutamicum ATCC 13032
Aligns to 23:201 / 619 (28.9%), covers 42.8% of PF12051, 40.7 bits
- The cssR gene of Corynebacterium glutamicum plays a negative regulatory role in stress responses
Liu, Microbial cell factories 2021 - “...for E. coli and 10gml 1 for C. glutamicum . Plasmid construction The cssR and ncgl1576 - ncgl1577 genes were amplified by PCR from genomic DNA of C. glutamicum RES167 strain with corresponding primer pairs listed in Additional file 1 : Table S2. These DNA fragments...”
- “...digested and subcloned into similar digested vectors, obtaining pET28a- cssR , pXMJ19- cssR and pXMJ19- ncgl1576 - ncgl1577 . The suicide plasmids pK18 mobsacB- cssR and pK18 mobsacB - ncgl1576 - ncgl1577 were prepared by overlap PCR with primer pairs listed in Additional file 1 :...”
SGO_0091 integral membrane protein (RefSeq) from Streptococcus gordonii str. Challis substr. CH1
Aligns to 15:219 / 807 (25.4%), covers 42.8% of PF12051, 40.6 bits
- Proteomic response in Streptococcus gordonii DL1 biofilm cells during attachment to salivary MUC5B
Robertsson, Journal of oral microbiology 2021 - “...2 as the cut-off for significant difference in expression, four proteins, Endo, GNAT, CoaE and SGO_0091, were identified as more abundant, and nine proteins, NifU, FtcD, GALE, Phgdh, SGO_1758, SGO_0264, SGO_0356, SGO_0636 and SGO_0834, were less abundant in biofilms on MUC5B, compared to biofilms on LDP...”
- “...in immune evasion. 2.2 A8AW57 Dephospho-CoA kinase CoaE Coenzyme A biosynthesis. 2.7 A8AUF3 Uncharacterized protein SGO_0091 Putative ABC transporter, suggested to be functionally associated with transcriptional regulator tetracycline repressor (TetR) family (SGO_0090) in S. gordonii DL1 based on gene neighborhood and gene co-occurrence [ 26 ]....”
- Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii
Nikitkova, Applied and environmental microbiology 2012 - “...used in qRT-PCR Primer name Primer sequence SGO_0091 IMP-F SGO_0091 IMP-R SGO_1834-F SGO_1834-R SGO_0671 murD-F SGO_0671 murD-R SGO_1541 atpC-F SGO_1541 atpC-R...”
- “...0.8 for SGO_1688, 0.88 for SGO_1890, and 0.83 for SGO_0091. For the scope of genes, the correlation resulted in a Pearson coefficient of 0.89. Phenotypic...”
PFCIRM129_04475 YhgE/Pip domain-containing protein from Propionibacterium freudenreichii subsp. freudenreichii
Aligns to 28:227 / 735 (27.2%), covers 51.6% of PF12051, 38.8 bits
llmg_1659 hypothetical protein (NCBI) from Lactococcus lactis subsp. cremoris MG1363
Aligns to 15:210 / 799 (24.5%), covers 44.4% of PF12051, 38.2 bits
- Transcriptional response of Lactococcus lactis during bacterial emulsification
Tarazanova, PloS one 2019 - “...Function unknown llmg_2163 K llmg_2163 hypothetical protein 18.4 1.4e-13 llmg_2164 llmg_2164 hypothetical protein 18.4 2.3e-11 llmg_1659 llmg_1659 hypothetical protein 11.3 4.6e-14 llmg_1572 mycA hypothetical protein 5.7 1.5e-8 llmg_0590 llmg_0590 hypothetical protein 4.9 2.1e-3 llmg_1263 llmg_1263 hypothetical protein 4.3 2.1e-6 llmg_1029 llmg_1029 hypothetical protein 4 8.2e-6 T....”
SSPP103 hypothetical protein (NCBI) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Aligns to 21:213 / 949 (20.3%), covers 36.7% of PF12051, 37.6 bits
LMRG_01482 hypothetical protein (RefSeq) from Listeria monocytogenes 10403S
Aligns to 16:186 / 927 (18.4%), covers 44.4% of PF12051, 35.5 bits
F9URZ3 Hypothetical membrane protein from Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
lp_2901 integral membrane protein (NCBI ptt file) from Lactobacillus plantarum WCFS1
Aligns to 19:190 / 1106 (15.6%), covers 43.6% of PF12051, 34.6 bits
- Identification of key proteins and pathways in cadmium tolerance of Lactobacillus plantarum strains by proteomic analysis.
Zhai, Scientific reports 2017 - “...F9UTN0 lp_3359; Hypothetical membrane protein, DUF125 family 2.24 F9ULS6 lp_0689; Cell surface protein, lipoprotein 2.05 F9URZ3 lp_2901; Hypothetical membrane protein 1.73 F9UU47 lp_3360; Hypothetical membrane protein, DUF125 family 3.35 Extracellular protein F9USP4 lp_3134; Extracellular protein, DUF 1093 family, membrane-bound 2.04 F9UR45 lp_2520; Extracellular protein, NlpC/P60 family,...”
- Identification of key proteins and pathways in cadmium tolerance of Lactobacillus plantarum strains by proteomic analysis
Zhai, Scientific reports 2017 - “...lp_3359; Hypothetical membrane protein, DUF125 family 2.24 F9ULS6 lp_0689; Cell surface protein, lipoprotein 2.05 F9URZ3 lp_2901; Hypothetical membrane protein 1.73 F9UU47 lp_3360; Hypothetical membrane protein, DUF125 family 3.35 Extracellular protein F9USP4 lp_3134; Extracellular protein, DUF 1093 family, membrane-bound 2.04 F9UR45 lp_2520; Extracellular protein, NlpC/P60 family, gamma-D-glutamate-meso-diaminopimelate...”
SPy2176 conserved hypothetical protein (NCBI ptt file) from Streptococcus pyogenes M1 GAS
Aligns to 17:213 / 757 (26.0%), covers 45.7% of PF12051, 34.6 bits
lmo2360 transmembrane protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 16:186 / 927 (18.4%), covers 44.4% of PF12051, 33.3 bits
spr2039 Conserved hypothetical protein, truncation (NCBI ptt file) from Streptococcus pneumoniae R6
Aligns to 9:207 / 255 (78.0%), covers 49.7% of PF12051, 32.2 bits
LMOf2365_2330 hypothetical protein (NCBI) from Listeria monocytogenes str. 4b F2365
Aligns to 16:186 / 927 (18.4%), covers 44.4% of PF12051, 32.0 bits
- Transcriptomics of Listeria monocytogenes Treated With Olive Leaf Extract
Liu, Frontiers in microbiology 2021 - “...LMOf2365_2357, and LMOf2365_2147), two-component systems (LMOf2365_0994 and LMOf2365_2662), virulence (LMOf2365_0213), membrane and cell wall related (LMOf2365_2330 and LMOf2365_2212), antimicrobial resistance and transport (LMOf2365_2560), etc. In addition, several genes with unknown function were also regulated. Of the 37 genes, 17 genes were upregulated in both 3.5-h and...”
- Transcriptomic Analysis of Listeria monocytogenes in Response to Bile Under Aerobic and Anaerobic Conditions
Chakravarty, Frontiers in microbiology 2021 - “...protein 6.9 52.5 LMOf2365_1435 Putative transporter 8.2 7.4 LMOf2365_1012 Membrane protein, TerC family 9.6 257.7 LMOf2365_2330 Putative membrane protein 18.9 46.3 TABLE 7 Transcript levels decreased for select genes in response to anaerobiosis at pH 7.5 and 5.5. Gene ID Gene product Transcript fold changes pH...”
SPCG_RS11630 YhgE/Pip family protein from Streptococcus pneumoniae CGSP14
Aligns to 1:194 / 240 (80.8%), covers 48.7% of PF12051, 28.9 bits
T0UL74 Phage infection protein from Lactococcus lactis subsp. cremoris TIFN1
Aligns to 25:221 / 901 (21.9%), covers 46.3% of PF12051, 28.0 bits
pip phage infection protein from Lactococcus lactis subsp. lactis (see paper)
pip / AAA03165.1 pip from Lactococcus lactis (see 3 papers)
Aligns to 25:221 / 901 (21.9%), covers 46.3% of PF12051, 28.0 bits
Or search for genetic data about PF12051 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory