Family Search for PF12084 (DUF3561)

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PF12084 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YgbE / b2749 DUF3561 domain-containing inner membrane protein YgbE from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 1:107 / 107 (100.0%), covers 100.0% of PF12084, 179.7 bits

Z4057 putative cytochrome oxidase subunit from Escherichia coli O157:H7 EDL933
Aligns to 1:107 / 107 (100.0%), covers 100.0% of PF12084, 178.8 bits

• Clonal and antigenic analysis of serogroup A Neisseria meningitidis with particular reference to epidemiological features of epidemic meningitis in the People's Republic of China
  Wang, Infection and immunity 1992
  • “...Z4110 Z4048 Z4022 Z4107 Z4108 Z4023 Z4105 Z4090 Z4095 Z4094 Z4057 Z4060 Z4015 Z4746 Z4753 Z4063 Z4064 Z4055 Z4083 B40 B256 B373 B473 Z4756 B35 B384 B73 B403...”
  • “...Z4023 Z4105, B499 Z4090, Z4114 Z4093 Z4111 Z4095 Z4094 Z4057 Z4060 Z4015 Z4746 Z4753 Z4063, Z4067, Z4074, Z4106 Z4113 Z4064 Z4055 Z4083 B40 B99 B346 B392 B398,...”

STM2932 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 12:118 / 118 (90.7%), covers 100.0% of PF12084, 171.0 bits

• Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
  Han, Heliyon 2020
  • “...3.5 0.002 3.5 0.003 yoaG STM1272 DUF1869 domain-containing protein; NsrR regulon gene 0.004 0.006 ygbE STM2932 inner membrane protein 1.5 0.002 1.7 0.003 yhaK STM3236 pirin domain protein 2.1 0.002 1.4 0.003 yhcN STM3361 Putative outer membrane protein 0.004 STM3362 STM3362 Putative periplasmic protein 0.004 yjbE...”

YPO3363 putative membrane protein from Yersinia pestis CO92
YPTB0768 putative membrane protein from Yersinia pseudotuberculosis IP 32953
Aligns to 1:104 / 105 (99.0%), covers 100.0% of PF12084, 160.7 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...IS1400 transposase B 2.101 (< 0.001) YPTB0678 YPO0544 putative membrane protein 0.631 (0.009) YPTB0768 (ygbE) YPO3363 putative membrane protein 1.735 (0.007) YPTB0793 YPO3339 hypothetical protein 1.679 (0.023) 1.94 (0.005) YPTB0795 YPO3336 conserved hypothetical protein 3 (< 0.001) YPTB0903 (crl) YPO3223 curlin genes regulatory protein 2.098 (<...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...or4788 putative IS1400 transposase B 2.101 (< 0.001) YPTB0678 YPO0544 putative membrane protein 0.631 (0.009) YPTB0768 (ygbE) YPO3363 putative membrane protein 1.735 (0.007) YPTB0793 YPO3339 hypothetical protein 1.679 (0.023) 1.94 (0.005) YPTB0795 YPO3336 conserved hypothetical protein 3 (< 0.001) YPTB0903 (crl) YPO3223 curlin genes regulatory protein...”

Or search for genetic data about PF12084 in the Fitness Browser