Family Search for PF12128 (DUF3584)

PF12128 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Sama_0592 smc-like chromosome partitioning protein (DUF3584) from Shewanella amazonensis SB2B
Aligns to 8:1198 / 1226 (97.1%), covers 100.0% of PF12128, 1831.5 bits

• mutant phenotype: Conserved phenotypes: important for motility and cisplatin resistance. DUF3584 is distantly related to smc proteins.

SO_4008 ATP-binding protein from Shewanella oneidensis MR-1
Aligns to 8:1195 / 1223 (97.1%), covers 100.0% of PF12128, 1827.4 bits

• Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions
  Deutschbauer, PLoS genetics 2011
  • “...survival in late stationary phase New Multiple mutants SO_3749 202842 N-acetyl-L-ornithine deacetylase New Complementation,Multiple mutants SO_4008 203092 Recombination regulatory protein New SO_4198 203280 Formiminoglutaminase Confirmed Complementation SO_4339 203417 Hypotaurine transporter New Multiple mutants SO_4485 203560 Diheme cytochrome c for energy production New Complementation SO_4565 203636 L-leucine...”

SO4008 smc-like chromosome partitioning protein (DUF3584) from Shewanella oneidensis MR-1
SO4008 Recombination regulatory protein from Shewanella oneidensis MR-1
Aligns to 1:1188 / 1216 (97.7%), covers 99.9% of PF12128, 1826.5 bits

• mutant phenotype: Conserved phenotypes: important for motility and cisplatin resistance. DUF3584 is distantly related to smc proteins.
• A universal TagModule collection for parallel genetic analysis of microorganisms
  Oh, Nucleic acids research 2010
  • “...SO1744), transporters (SO4693, ftsX , ftsE ), and uncharacterized proteins (including two independent mutants in SO4008) in the response and adaptation of S. oneidensis MR-1 to high salinity. Interestingly, the ftsX and ftsE mutants in S. oneidensis MR-1 appear to have the opposite phenotype in E....”

Shewana3_0638 smc-like chromosome partitioning protein (DUF3584) from Shewanella sp. ANA-3
Aligns to 8:1195 / 1223 (97.1%), covers 100.0% of PF12128, 1814.9 bits

• mutant phenotype: This gene has a conserved motility defect. and some close homologs are important for resisting cisplatin. DUF3584 is distantly related to smc proteins.

Shew_3118 smc-like chromosome partitioning protein (DUF3584) from Shewanella loihica PV-4
Aligns to 8:1195 / 1223 (97.1%), covers 100.0% of PF12128, 1641.0 bits

• mutant phenotype: Conserved phenotypes: important for motility and cisplatin resistance. DUF3584 is distantly related to smc proteins.

VV1_2184 ATPase involved in DNA repair from Vibrio vulnificus CMCP6
Aligns to 2:1174 / 1201 (97.7%), covers 98.6% of PF12128, 477.4 bits

• Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains
  Guerrero, PloS one 2019
  • “...VVMO6_03524 + - VVA0420 + + VV1_2183 - - VVMO6_03525 + - VVA0421 + + VV1_2184 - - VVMO6_03526 + - VVA0422 + + VV1_2228 + + VVMO6_04101 + + VVA0423 + + VV1_2321 + + VVMO6_04102 + + VVA0424 + + VV1_2326 + + VVMO6_04103...”
• SOLiD sequencing of four Vibrio vulnificus genomes enables comparative genomic analysis and identification of candidate clade-specific virulence genes
  Gulig, BMC genomics 2010
  • “...VV1_2115 - COG3110S VV1_2158 methyl-accepting chemotaxis protein - COG0840NT VV1_2183 hypothetical protein VV1_2183 - COG2378K VV1_2184 ATPase involved in DNA repair - COG0419L VV1_2228 GGDEF family protein - COG3706T VV1_2321 GGDEF family protein - COG3614T VV1_2326 hypothetical protein VV1_2326 - - VV1_2327 hypothetical protein VV1_2327 -...”

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