PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF12372 (Htt_N-HEAT)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

PF12372 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_077333 huntingtin from Rattus norvegicus
Aligns to 737:1613 / 3120 (28.1%), covers 99.9% of PF12372, 1134.9 bits

HD_MOUSE / P42859 Huntingtin; Huntington disease protein homolog; HD protein homolog from Mus musculus (Mouse) (see 4 papers)
Aligns to 736:1612 / 3119 (28.1%), covers 99.9% of PF12372, 1126.8 bits

P51111 Huntingtin from Rattus norvegicus
Aligns to 727:1603 / 3110 (28.2%), covers 99.9% of PF12372, 1126.8 bits

NP_034544 huntingtin from Mus musculus
G3X9H5 Huntingtin from Mus musculus
Aligns to 737:1613 / 3120 (28.1%), covers 99.9% of PF12372, 1125.6 bits

Q59FF4 Huntingtin variant (Fragment) from Homo sapiens
Aligns to 154:1030 / 1147 (76.5%), covers 99.9% of PF12372, 1099.1 bits

NP_002102 huntingtin isoform 2 from Homo sapiens
Aligns to 758:1634 / 3144 (27.9%), covers 99.9% of PF12372, 1096.4 bits

HD_HUMAN / P42858 Huntingtin; Huntington disease protein; HD protein from Homo sapiens (Human) (see 24 papers)
Aligns to 756:1632 / 3142 (27.9%), covers 99.9% of PF12372, 1096.4 bits

XP_536221 huntingtin isoform X1 from Canis lupus familiaris
Aligns to 746:1622 / 3130 (28.0%), covers 99.9% of PF12372, 1092.5 bits

XP_001364862 huntingtin isoform X1 from Monodelphis domestica
Aligns to 749:1625 / 3135 (28.0%), covers 99.9% of PF12372, 1078.7 bits

XP_420822 LOW QUALITY PROTEIN: huntingtin isoform X1 from Gallus gallus
Aligns to 710:1586 / 3095 (28.3%), covers 99.9% of PF12372, 1067.4 bits

XP_005160073 huntingtin isoform X5 from Danio rerio
Aligns to 708:1606 / 3115 (28.9%), covers 99.9% of PF12372, 1019.3 bits

NP_571093 huntingtin from Danio rerio
Aligns to 708:1606 / 3121 (28.8%), covers 99.9% of PF12372, 1018.6 bits

HD_TAKRU / P51112 Huntingtin; Huntington disease protein homolog; HD protein homolog from Takifugu rubripes (Japanese pufferfish) (Fugu rubripes) (see paper)
Aligns to 714:1627 / 3148 (29.0%), covers 99.8% of PF12372, 1003.1 bits

XP_006822985 huntingtin from Saccoglossus kowalevskii
2 alignments in 666:1831 / 2816 (36.5%), covering up to 99.6% of PF12372, 920.4 bits

XP_005093645 huntingtin from Aplysia californica
Aligns to 608:1494 / 3024 (29.3%), covers 99.9% of PF12372, 879.7 bits

NP_001263041 huntingtin, isoform B from Drosophila melanogaster
3 alignments in 1613:2836 / 3583 (32.2%), covering up to 100.0% of PF12372, 846.6 bits

DDB_G0272344, XP_645159 Huntingtin family protein from Dictyostelium discoideum AX4
Aligns to 584:1085 / 3095 (16.2%), covers 62.7% of PF12372, 115.2 bits

Or search for genetic data about PF12372 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory