Family Search for PF12889 (DUF3829)

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PF12889 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YiiG / b3896 DUF3829 domain-containing lipoprotein YiiG from Escherichia coli K-12 substr. MG1655 (see paper)
P32151 Uncharacterized protein YiiG from Escherichia coli (strain K12)
b3896 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 72:349 / 351 (79.2%), covers 99.6% of PF12889, 319.3 bits

• RhlA converts beta-hydroxyacyl-acyl carrier protein intermediates in fatty acid synthesis to the beta-hydroxydecanoyl-beta-hydroxydecanoate component of rhamnolipids in Pseudomonas aeruginosa
  Zhu, Journal of bacteriology 2008
  • “...Source P. aeruginosa strains PA14 PAO1 KZ1 (rhlG) P32151 (rhlG::Tn) KZ4 (rhlA::Gm) P39482 (fabI::Tn) KZ2 (rhlG::Gm) KZ3 (rhlG::Tn) PAO652 (fabA) Wild type Wild...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b1310 b2062 b2123 b2138 b2270 b2376 b2505 b2636 b2971 b3014 b3265 b3552 b3896 b4029 b4080 2.85 A 13.9 A 39.75 A 4.35 A 2.25 A 0.3 A 12.2 A 8.65 A 1.85 A 8.85 A...”

SPAB_05003 hypothetical protein from Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 310.7 bits

• On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004
  Allard, PloS one 2013
  • “...enterica subsp. enterica serovar Enteritidis str. P125109] Length=367 22 312_input.aln 312_protein.fas 70 GA 24 DN SPAB_05003 SPAB_05003 ref|YP_001591127.1| hypothetical protein SPAB_05003 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length=366 23 32_input.aln 32_protein.fas 103 GA 35 DN SEN3501 SEN3501 ref|YP_002245567.1| hypothetical protein SEN3501 [Salmonella enterica...”

SeKA_A3678 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 310.6 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...11 hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240...”

AEX15_19615 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 310.6 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240 SeKA_A4188, SeKA_A4198...”

STM4039 putative inner membrane lipoprotein from Salmonella typhimurium LT2
SL1344_3987 YiiG family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 289.2 bits

• AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity
  Guard, Microorganisms 2021
  • “...in a guanidine rich fragment, causing a frameshift; homology in SEEG to tRNA-pro phage associated STM4039 SEEG9184_23265 SEN_RS24515 conserved unnamed SEN, SEEG pseudogene HO protein inner membrane protein STM1666 no homolog SEN_RS07090 conserved unnamed STM pseudogene, SEEG absent STM has in-frame stop following codon 24; SEN,...”
• Structure-based analyses of Salmonella RcsB variants unravel new features of the Rcs regulon
  Huesa, Nucleic acids research 2021
  • “...gene intra-CDS 615 TGAGAATTTACTCA 4.43 4114157 SL1344_3849 rbsA gene intra-CDS + 761 TGAGATTCGCCTCA 2.23 4271020 SL1344_3987 antisense internalTSS + 4271128 108 to 94 TGGGATCAAACTCA 1.43 2024731 SL1344_1911 rcsA gene promoter + 264 TAAGGTTTATCCGA 1.72 Validation of RcsB boxes identified in the genome-wide analysis Our RNAseq data...”

AEX15_19610 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 287.8 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240 SeKA_A4188,...”

SeKA_A3672 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 287.2 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...AEX15_04645 11 hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein...”

Vpar_1589 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 48:297 / 302 (82.8%), covers 87.0% of PF12889, 72.4 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...Unclear + + + Vpar_1579 ATPase involved in DNA repair-like protein Unclear + + + Vpar_1589 * Unknown Protein containing DUF3829 domain Unclear + + + Vpar_0136 Unknown protein containing copper amine oxidase domain Unclear + + + Vpar_0305 Uncharacterized protein Unclear + + + Vpar_0469...”
  • “...important target of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure...”

Vpar_1765 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 49:292 / 299 (81.6%), covers 66.9% of PF12889, 60.2 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...Vpar_0945 * Uncharacterized protein Unclear + + Vpar_0965 Glycoside hydrolase family 18 Unclear + + Vpar_1765 * Unknown protein containing DUF3829 domain Unclear + + Vpar_0828 HI0933 family protein Unclear + + Vpar_0593 SpoIID/LytB domain protein Secreted + + + Vpar_0260 * Periplasmic binding protein Unclear...”
  • “...of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure 4 ),...”

Vpar_1760 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 40:288 / 296 (84.1%), covers 62.7% of PF12889, 59.3 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...+ Vpar_1148 Uncharacterized protein Unclear + + + Vpar_1276 Uncharacterized protein Unclear + + + Vpar_1760 * Unknown protein containing DUF3829 domain Unclear + + + Vpar_1516 Uncharacterized protein Unclear + + + Vpar_0809 Peptidase M23 Unclear + + + Vpar_1526 Uncharacterized protein Unclear + +...”
  • “...target of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure 4...”

Or search for genetic data about PF12889 in the Fitness Browser