Family Search for PF12889 (DUF3829)

PF12889 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YiiG / b3896 DUF3829 domain-containing lipoprotein YiiG from Escherichia coli K-12 substr. MG1655 (see paper)
P32151 Uncharacterized protein YiiG from Escherichia coli (strain K12)
b3896 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 72:349 / 351 (79.2%), covers 99.6% of PF12889, 345.7 bits

• RhlA converts beta-hydroxyacyl-acyl carrier protein intermediates in fatty acid synthesis to the beta-hydroxydecanoyl-beta-hydroxydecanoate component of rhamnolipids in Pseudomonas aeruginosa
  Zhu, Journal of bacteriology 2008
  • “...Source P. aeruginosa strains PA14 PAO1 KZ1 (rhlG) P32151 (rhlG::Tn) KZ4 (rhlA::Gm) P39482 (fabI::Tn) KZ2 (rhlG::Gm) KZ3 (rhlG::Tn) PAO652 (fabA) Wild type Wild...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b1310 b2062 b2123 b2138 b2270 b2376 b2505 b2636 b2971 b3014 b3265 b3552 b3896 b4029 b4080 2.85 A 13.9 A 39.75 A 4.35 A 2.25 A 0.3 A 12.2 A 8.65 A 1.85 A 8.85 A...”

SeKA_A3678 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 339.2 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...11 hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240...”

AEX15_19615 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 339.2 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240 SeKA_A4188, SeKA_A4198...”

SPAB_05003 hypothetical protein from Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Aligns to 87:364 / 366 (76.0%), covers 99.6% of PF12889, 339.2 bits

• On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004
  Allard, PloS one 2013
  • “...enterica subsp. enterica serovar Enteritidis str. P125109] Length=367 22 312_input.aln 312_protein.fas 70 GA 24 DN SPAB_05003 SPAB_05003 ref|YP_001591127.1| hypothetical protein SPAB_05003 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length=366 23 32_input.aln 32_protein.fas 103 GA 35 DN SEN3501 SEN3501 ref|YP_002245567.1| hypothetical protein SEN3501 [Salmonella enterica...”

SL1344_3987 YiiG family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
STM4039 putative inner membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 315.9 bits

• Structure-based analyses of Salmonella RcsB variants unravel new features of the Rcs regulon
  Huesa, Nucleic acids research 2021
  • “...gene intra-CDS 615 TGAGAATTTACTCA 4.43 4114157 SL1344_3849 rbsA gene intra-CDS + 761 TGAGATTCGCCTCA 2.23 4271020 SL1344_3987 antisense internalTSS + 4271128 108 to 94 TGGGATCAAACTCA 1.43 2024731 SL1344_1911 rcsA gene promoter + 264 TAAGGTTTATCCGA 1.72 Validation of RcsB boxes identified in the genome-wide analysis Our RNAseq data...”
• AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity
  Guard, Microorganisms 2021
  • “...in a guanidine rich fragment, causing a frameshift; homology in SEEG to tRNA-pro phage associated STM4039 SEEG9184_23265 SEN_RS24515 conserved unnamed SEN, SEEG pseudogene HO protein inner membrane protein STM1666 no homolog SEN_RS07090 conserved unnamed STM pseudogene, SEEG absent STM has in-frame stop following codon 24; SEN,...”

AEX15_19610 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 314.3 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein 10240 SeKA_A4188,...”

SeKA_A3672 YiiG family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 55:336 / 343 (82.2%), covers 99.3% of PF12889, 313.7 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...AEX15_04645 11 hypothetical proteins, putative autotransporter 5146 SeKA_A3310, SeKA_A3314 AEX15_02655, AEX15_02660 12 hypothetical proteins 5073 SeKA_A3672, SeKA_A3678 AEX15_19610, AEX15_19615 13 DNA phosphorothioation, hypothetical proteins, integrase D 17034 SeKA_A4142 (tRNA-Leu), SeKA_A4161 C SEEK9263_t17079 (tRNA-Leu), SEEK9263_16827 C 14 type I restriction-modification system, putative inner membrane protein, hypothetical protein...”

Vpar_1589 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 48:301 / 302 (84.1%), covers 86.0% of PF12889, 58.2 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...Unclear + + + Vpar_1579 ATPase involved in DNA repair-like protein Unclear + + + Vpar_1589 * Unknown Protein containing DUF3829 domain Unclear + + + Vpar_0136 Unknown protein containing copper amine oxidase domain Unclear + + + Vpar_0305 Uncharacterized protein Unclear + + + Vpar_0469...”
  • “...important target of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure...”

Vpar_1765 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 49:295 / 299 (82.6%), covers 69.5% of PF12889, 52.1 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...Vpar_0945 * Uncharacterized protein Unclear + + Vpar_0965 Glycoside hydrolase family 18 Unclear + + Vpar_1765 * Unknown protein containing DUF3829 domain Unclear + + Vpar_0828 HI0933 family protein Unclear + + Vpar_0593 SpoIID/LytB domain protein Secreted + + + Vpar_0260 * Periplasmic binding protein Unclear...”
  • “...of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure 4 ),...”

Vpar_1760 hypothetical protein from Veillonella parvula DSM 2008
Aligns to 31:268 / 296 (80.4%), covers 61.8% of PF12889, 50.7 bits

• Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
  Poppleton, Frontiers in microbiology 2017
  • “...+ Vpar_1148 Uncharacterized protein Unclear + + + Vpar_1276 Uncharacterized protein Unclear + + + Vpar_1760 * Unknown protein containing DUF3829 domain Unclear + + + Vpar_1516 Uncharacterized protein Unclear + + + Vpar_0809 Peptidase M23 Unclear + + + Vpar_1526 Uncharacterized protein Unclear + +...”
  • “...target of future study. We found three proteins corresponding to the DUF3829 domain ( Vpar_1589, Vpar_1760, Vpar_1765 ) (Figure 7 ). Although this domain is found in the distantly related Proteobacteria using a CDD search, the only close BLAST hits were from human-associated Negativicutes (Figure 4...”

Or search for genetic data about PF12889 in the Fitness Browser