Family Search for PF13132 (DUF3950)

PF13132 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM1092 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 21:50 / 56 (53.6%), covers 100.0% of PF13132, 77.7 bits

• Effects of indole on drug resistance and virulence of Salmonella enterica serovar Typhimurium revealed by genome-wide analyses
  Nikaido, Gut pathogens 2012
  • “...reductase, subunit A 0.12 0.063 STM0965 dmsB Anaerobic dimethyl sulfoxide reductase, subunit B 0.13 0.025 STM1092 orfX Putative cytoplasmic protein 0.082 0.031 STM1171 flgN Flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL 0.27 0.082 STM1183 flgK Flagellar biosynthesis, hook-filament junction protein 1 0.19...”
• Salmonella enterica serovar typhimurium colonizing the lumen of the chicken intestine grows slowly and upregulates a unique set of virulence and metabolism genes
  Harvey, Infection and immunity 2011
  • “...protein 2.3 0.02 Not in COGs STM0471 STM1059 STM1092 STM1601 STM2983 ylaC ycbW ugtL orfX Putative Putative Putative Putative Putative 2.06 2.71 2.32 2.1...”
• The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen
  Chiu, Nucleic acids research 2005
  • “...in S .Choleraesuis, instead of the 431 bp orf (STM1089) in S .Typhimurium. Two genes (STM1092 and STM1093) between sopB and pipD of SPI-5 were absent in S .Choleraesuis. Within SPI-1 of S .Choleraesuis, while avrA and three other genes of unknown function (STM2901-STM2903) were not...”

YnfO / b4533 Qin prophage; DUF3950 domain-containing protein YnfO from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 21:50 / 77 (39.0%), covers 100.0% of PF13132, 75.6 bits

c1442 Unknown protein encoded within prophage from Escherichia coli CFT073
Aligns to 21:50 / 77 (39.0%), covers 100.0% of PF13132, 74.8 bits

• Reverse Genetics with a Full-Length Infectious cDNA Clone of Bovine Torovirus
  Ujike, Journal of virology 2022 (secret)

YlcI / b4589 DLP12 prophage; DUF3950 domain-containing protein YlcI from Escherichia coli K-12 substr. MG1655
Aligns to 21:50 / 64 (46.9%), covers 96.7% of PF13132, 72.8 bits

EC042_1353 YlcI/YnfO family protein from Escherichia coli 042
Aligns to 21:50 / 77 (39.0%), covers 100.0% of PF13132, 72.8 bits

• Gene duplications in the E. coli genome: common themes among pathotypes
  Bernabeu, BMC genomics 2019
  • “...3.5 4.8 27 EC042_1343 2.8 4.8 28 EC042_1344 1.7 4 29 EC042_1349 2.4 3.8 30 EC042_1353 4.3 3.3 31 EC042_1371 1.5 6.1 32 EC042_1372 1.5 3.8 33 EC042_1373 1.6 3.3 34 EC042_1376 2 3.7 35 EC042_1377 2.4 4.2 Region 2 46 EC042_2236A 2.9 2.9 47 EC042_2237...”

Z2366 unknown protein encoded within prophage CP-933R from Escherichia coli O157:H7 EDL933
Aligns to 21:50 / 74 (40.5%), covers 96.7% of PF13132, 70.6 bits

• Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut
  Bakkeren, eLife 2021
  • “...al., 2012 SL1344 P2 M1404 P2 cured Sm Stecher et al., 2012 E. coli 536 Z2366 Wild-type Sm Berger et al., 1982 ; Brzuszkiewicz et al., 2006 E. coli 536 P2 cat Z2124 cat on P2 Sm, Cm This study SL1344 P2 pM975 Z2287 P2 cured;...”
• OI-57, a genomic island of Escherichia coli O157, is present in other seropathotypes of Shiga toxin-producing E. coli associated with severe human disease
  Imamovic, Infection and immunity 2010
  • “...Z2104 Z2105 Z2105 Z2121 Z2121 Z2148 Z2148 Z2149 Z2149 Z2150 Z2150 Z2366 Z2366 Z2979 Rev Fwd Rev Fwd Rev Fwd Rev Fwd Rev Fwd Rev Fwd Rev Fwd Rev Fwd Rev Fwd...”
  • “...Z2150 Unknown protein encoded by prophage CP-933R Z2366 Unknown protein encoded within prophage CP-933R Z2979 Putative stability/partitioning protein encoded...”

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