PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13225 (DUF4033)

PF13225.6 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT1G64680 hypothetical protein (RefSeq) from Arabidopsis thaliana
Q9SGU7 At1g64680 from Arabidopsis thaliana
Aligns to 140:222 / 250 (33.2%), covers 100.0% of PF13225, 128.5 bits

AT4G01995 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 149:232 / 258 (32.6%), covers 96.6% of PF13225, 117.4 bits

D27_MEDTR / R4HZ96 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see 2 papers)
R4HZ96 beta-carotene isomerase (EC 5.2.1.14) from Medicago truncatula (see paper)
Aligns to 146:228 / 252 (32.9%), covers 97.8% of PF13225, 116.8 bits

D27_ARATH / Q7XA78 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27 homolog; AtD27; EC 5.2.1.14 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT1G03055 hypothetical protein (RefSeq) from Arabidopsis thaliana
NP_563673 beta-carotene isomerase D27-like protein from Arabidopsis thaliana
Aligns to 160:242 / 264 (31.4%), covers 98.9% of PF13225, 116.1 bits

D27_ORYSJ / C7AU21 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Oryza sativa subsp. japonica (Rice) (see 4 papers)
C7AU21 beta-carotene isomerase (EC 5.2.1.14) from Oryza sativa (see paper)
DWARF27 / C7AU21 β-carotene isomerase (EC 5.2.1.14) from Oryza sativa subsp. japonica (see 2 papers)
Aligns to 173:254 / 278 (29.5%), covers 96.6% of PF13225, 111.7 bits

GRMZM2G116461 uncharacterized protein LOC100277925 precursor from Zea mays
Aligns to 157:238 / 262 (31.3%), covers 96.6% of PF13225, 110.5 bits

Or search for genetic data about PF13225 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory