PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13225 (D27-like_C)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

PF13225 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

D27_MEDTR / R4HZ96 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see 2 papers)
R4HZ96 beta-carotene isomerase (EC 5.2.1.14) from Medicago truncatula (see paper)
Aligns to 146:228 / 252 (32.9%), covers 97.7% of PF13225, 120.2 bits

D27_ARATH / Q7XA78 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27 homolog; AtD27; EC 5.2.1.14 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 160:242 / 264 (31.4%), covers 98.9% of PF13225, 120.0 bits

DWARF27 / C7AU21 β-carotene isomerase (EC 5.2.1.14) from Oryza sativa subsp. japonica (see 2 papers)
D27_ORYSJ / C7AU21 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Oryza sativa subsp. japonica (Rice) (see 4 papers)
C7AU21 beta-carotene isomerase (EC 5.2.1.14) from Oryza sativa (see paper)
Aligns to 173:254 / 278 (29.5%), covers 96.6% of PF13225, 115.0 bits

Or search for genetic data about PF13225 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory