Family Search for PF13251 (DUF4042)

PF13251 hits 2 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

HEAT6_HUMAN / Q6AI08 HEAT repeat-containing protein 6; Amplified in breast cancer protein 1 from Homo sapiens (Human) (see paper)
NP_071353 HEAT repeat-containing protein 6 from Homo sapiens
Aligns to 418:599 / 1181 (15.4%), covers 100.0% of PF13251, 224.8 bits

• function: Amplification-dependent oncogene
• [The relationship between the expression of amplified in breast cancer 1、androgen receptor and tamoxifen resistance in breast cancer].
  Liu, Zhonghua yi xue za zhi 2023 (PubMed)
  • GeneRIF: [The relationship between the expression of amplified in breast cancer 1androgen receptor and tamoxifen resistance in breast cancer].
• Proteomic Analysis Reveals Major Proteins and Pathways That Mediate the Effect of 17-β-Estradiol in Cell Division and Apoptosis in Breast Cancer MCF7 Cells.
  Zhou, Journal of proteome research 2024
  • “...O14980, Q92973, O14787, P55060, Q8TEX9, Q96P70, O95373 2.1310 12 84.9 UP_SEQ_FEATURE REPEAT:HEAT 4 9 Q14974, Q6AI08, O14980, Q92973, P53618, Q86VP6, P30153, O14787, Q8TEX9 4.6810 10 30.6 UP_SEQ_FEATURE REPEAT:HEAT 3 9 Q14974, Q6AI08, O14980, Q92973, P53618, Q86VP6, P30153, O14787, Q8TEX9 1.3910 09 26.8 UP_SEQ_FEATURE REPEAT:HEAT 6 8...”
  • “...O14980, Q92973, P53618, Q86VP6, P30153, O14787, Q8TEX9 1.7310 09 36.7 UP_SEQ_FEATURE REPEAT:HEAT 1 9 Q14974, Q6AI08, O14980, Q92973, P53618, Q86VP6, P30153, O14787, Q8TEX9 4.6310 09 23.2 UP_SEQ_FEATURE REPEAT:HEAT 2 9 Q14974, Q6AI08, O14980, Q92973, P53618, Q86VP6, P30153, O14787, Q8TEX9 4.6310 09 23.2 UP_SEQ_FEATURE REPEAT:HEAT 5 8...”

AT4G38120 binding from Arabidopsis thaliana
Aligns to 389:575 / 1165 (16.1%), covers 98.9% of PF13251, 207.4 bits

• New insights into QTNs and potential candidate genes governing rice yield via a multi-model genome-wide association study
  Sachdeva, BMC plant biology 2024
  • “...GO:0031090 AT1G14010 Emp24/gp25L/p24 family/GOLD family protein LOC_OS07G43870 AT1G18700 DNAJ heat shock N-terminal domain-containing protein LOC_OS08G05670 AT4G38120 ARM repeat superfamily protein LOC_OS08G05570 AT1G63940 Monodehydroascorbate reductase 6 LOC_OS09G15775 AT1G36730 Translation initiation factor IF2/IF5 LOC_OS09G15770 GO:0005525 AT1G36730 Translation initiation factor IF2/IF5 LOC_OS11G41820 GO:0003723 AT1G60900 "U2 snRNP auxilliary factor, large...”
• Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae
  Liu, Plant communications 2024
  • “...AT4G27740 AT4G32990 AT4G27745 AT4G32780 U4 AT4G33000 AT4G35730 AT4G33560 AT4G35730 U5 AT4G35733 AT4G38100 AT4G35740 AT4G38100 U6 AT4G38120 AT4G40100 AT4G38120 AT4G40100 CBK9 R1 AT5G23000 AT5G19350 AT5G22940 AT5G19350 R2 AT5G19340 AT5G13390 AT5G19330 AT5G13390 R3 AT5G13380 AT5G08540 AT5G13360 AT5G08540 R4 AT5G08535 AT5G06740 AT5G08535 AT5G06750 R5 AT5G06730 AT5G01010 AT5G06440 AT5G01030 W3...”
• Use of Arabidopsis thaliana as a model to understand specific carcinogenic events: Comparison of the molecular machinery associated with cancer-hallmarks in plants and humans
  Clavijo-Buriticá, Heliyon 2023
  • “...and HEATR6 genes, orthologs of the A.thaliana AT1G72320 and AT4G38120 genes, reduced cell division in the analyzed cell cultures [11 ]. Even more, we showed...”
• Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana
  Wan, Genome biology 2015
  • “...AT2G07671, AT2G07708, AT2G07687, AT2G07727, AT2G11910, AT2G31141, AT2G33980, AT2G35750, AT2G07698, AT3G12590, AT3G41762, AT3G50380, AT4G00585, AT4G02770, AT4G31350, AT4G38120, AT4G39690, AT5G08060, AT5G15320, AT5G15750, AT5G26850, AT5G59613, AT1G07705, AT3G58010, AT3G63052, AT1G30910, AT3G08950, AT3G47060, AT2G07715, AT1G10522, AT3G06310, AT1G31860, AT5G53740, AT1G49700, AT4G31390, AT2G21340, AT3G43540, AT2G25660, AT5G66380, AT1G45332, AT5G61310, AT5G15700, AT3G18040, AT3G56120, AT4G01210, AT4G00630,...”
  • “...r EA for AT5G22700, s RA for AT3G13400, t EA for AT3G13400, u EA for AT4G38120, v EA for AT4G38120. (DOC 1342 kb) Additional file 11: Figure S3. RNA QC results of the total RNA and the RIP RNA for m 6 A-seq samples. a RNA...”
• Identification of putative cancer genes through data integration and comparative genomics between plants and humans
  Quimbaya, Cellular and molecular life sciences : CMLS 2012
  • “...037016.52.60.X-Intronic 030197.20.30.X-Intronic ESPL1 CTU2 AT4G38120 F20D10.240 066582.56.00.X-Exonic HEATR6 AT5G05660 ATNFXL2 017558.18.75.X-Exonic NFXL1...”
  • “...165 6,110 4,376 AT4G07410?/- 1.16 18.3 1,524 398 7,286 AT4G38120 1.37 30.1 2,020 377 11,359 AT5G22370?/- 1.10 29.1 1,387 550 16,016 AT5G49110 1.51 26.2 2,498...”

Or search for genetic data about PF13251 in the Fitness Browser