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Family Search for PF13252 (DUF4043)

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Running HMMer for PF13252

PF13252 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NGO1090 hypothetical protein, putative phage associated protein from Neisseria gonorrhoeae FA 1090
Aligns to 6:426 / 431 (97.7%), covers 99.7% of PF13252, 511.4 bits

B4RKL3 Putative phage associated protein from Neisseria gonorrhoeae (strain NCCP11945)
NGK_0673 putative phage associated protein from Neisseria gonorrhoeae NCCP11945
Aligns to 6:426 / 431 (97.7%), covers 99.7% of PF13252, 510.4 bits

DelCs14_4061 N4-gp56 family major capsid protein from Delftia sp. Cs1-4
Aligns to 5:370 / 371 (98.7%), covers 99.5% of PF13252, 422.8 bits

PEp14_00010 major head protein from Erwinia phage PEp14
Aligns to 5:362 / 365 (98.1%), covers 99.5% of PF13252, 352.5 bits

Z1479 unknown protein encoded by bacteriophage BP-933W from Escherichia coli O157:H7 EDL933
NP_049514 major head protein from Escherichia phage 933W
NP_049514 hypothetical protein from Enterobacteria phage 933W
ECs1223 hypothetical protein from Escherichia coli O157:H7 str. Sakai
EDL933_1401 N4-gp56 family major capsid protein from Escherichia coli O157:H7 str. EDL933
Aligns to 1:404 / 404 (100.0%), covers 99.5% of PF13252, 322.8 bits

CAPSD_BPKP2 / C0HJH8 Major capsid protein; Major structural protein; Major virion protein from Pseudomonas phage KPP25 (Bacteriophage KPP25) (see paper)
Aligns to 11:376 / 376 (97.3%), covers 97.6% of PF13252, 143.8 bits

Hac_1621 conserved hypothetical protein CUP0939 from Helicobacter acinonychis str. Sheeba
Aligns to 171:378 / 380 (54.7%), covers 40.9% of PF13252, 43.8 bits

I7H0H9 Major structural protein ORF14 from Helicobacter pylori bacteriophage KHP30
Aligns to 174:378 / 381 (53.8%), covers 41.2% of PF13252, 41.9 bits

HCD_00925 DUF4043 family protein from Helicobacter cetorum MIT 99-5656
Aligns to 176:381 / 389 (53.0%), covers 43.0% of PF13252, 41.1 bits

Or search for genetic data about PF13252 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory