PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13689 (DUF4154)

PF13689 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PP4671 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 42:182 / 188 (75.0%), covers 97.9% of PF13689, 120.7 bits

PFLU5211 hypothetical protein from Pseudomonas fluorescens SBW25
Aligns to 44:184 / 190 (74.2%), covers 99.3% of PF13689, 116.6 bits

GIB65_04465 YfiR family protein from Pseudomonas lactis
Aligns to 42:182 / 188 (75.0%), covers 99.3% of PF13689, 116.1 bits

5eb3A / Q9I4L4 Vb6-bound protein (see paper)
Aligns to 8:148 / 153 (92.2%), covers 97.9% of PF13689, 115.3 bits

YPTB0593 putative membrane protein from Yersinia pseudotuberculosis IP 32953
YPO0450 putative membrane protein from Yersinia pestis CO92
y3729 hypothetical protein from Yersinia pestis KIM
YPK_3615 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 61:201 / 207 (68.1%), covers 98.6% of PF13689, 114.5 bits

GIB64_26910 YfiR family protein from Pseudomonas lactis
Aligns to 42:182 / 188 (75.0%), covers 99.3% of PF13689, 114.5 bits

YFIR_PSEAE / Q9I4L4 Negative regulator YfiR from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 6 papers)
NP_249812 hypothetical protein from Pseudomonas aeruginosa PAO1
PA1121 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 45:185 / 190 (74.2%), covers 97.9% of PF13689, 114.3 bits

PA14_49880 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 45:185 / 190 (74.2%), covers 97.9% of PF13689, 113.6 bits

YfiR / b2603 DUF4154 domain-containing protein YfiR from Escherichia coli K-12 substr. MG1655 (see 5 papers)
YFIR_ECOLI / P64548 Protein YfiR from Escherichia coli (strain K12) (see paper)
ECs3466 hypothetical protein from Escherichia coli O157:H7 str. Sakai
b2603 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Z3897 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 29:167 / 172 (80.8%), covers 97.2% of PF13689, 109.3 bits

SC2673 putative periplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
SEN2592 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 29:167 / 172 (80.8%), covers 97.9% of PF13689, 104.3 bits

ETAE_1906 hypothetical protein from Edwardsiella tarda EIB202
Aligns to 44:180 / 183 (74.9%), covers 97.2% of PF13689, 93.6 bits

VF_A0058 hypothetical protein from Vibrio fischeri ES114
Aligns to 45:185 / 193 (73.1%), covers 98.6% of PF13689, 86.1 bits

HMPREF0010_03702 YfiR family protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Aligns to 31:164 / 167 (80.2%), covers 95.1% of PF13689, 85.1 bits

MBHS_04547 YfiR family protein from Candidatus Venteria ishoeyi
Aligns to 2:80 / 92 (85.9%), covers 53.1% of PF13689, 56.8 bits

Or search for genetic data about PF13689 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory