Family Search for PF13698 (DUF4156)

PF13698.6 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM0349 putative outer membrane lipoprotein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 19:117 / 119 (83.2%), covers 100.0% of PF13698, 116.2 bits

• Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR
  Kim, Applied and environmental microbiology 2006
  • “...(bp) Annealing temp (C) 1 STM3098 423 65 STM4444 253 65 STM0349 249 65 STM4030 310 65 STM1550 187 67 STM2235 177 65 STM2630 115 65 STM2744 141 65 STM2752 203 65...”
  • “...enterica subsp. I and IIIb, and the primer pair STM0349 amplified specific PCR products with S. enterica subsp. I, II, and IIIb. Primer pair STM4030 amplified...”
• Identification and characterization of Helicobacter pylori genes essential for gastric colonization
  Kavermann, The Journal of experimental medicine 2003
  • “...hp STM0240 0486 2 hp <0.0025 STM0210 0973 2 hp <0.0009 STM0259 1525 2 hp STM0349 0758 a 2 chimp <0.0026 STM0256 1486 a 2 chimp Hp, hypothetical protein; chimp, conserved hypothetical integral membrane protein; C.I., competitive index, defined as the output ratio (mutant/wild type) divided...”

YjeI / b4144 DUF4156 domain-containing lipoprotein YjeI from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b4144 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 23:115 / 117 (79.5%), covers 100.0% of PF13698, 111.1 bits

• Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
  Bonocora, PLoS genetics 2015
  • “...7753 8.401 IS50 4370368 2 TG GG TATCAAAG TTGC A 4370368 + b4143 groL + b4144 yjeI 464 7.795 IS51 4445887 1 CA GGC ACTGGAT TTGC T 4445887 + b4221 tamB + b4222 ytfP 30 8.931 IS52 4457537 2 AA GG AACTATTC TTGC A 4457513 +...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...yjeI b0196 b0557 b0867 b0909 b1193 b1379 b1585 b2617 b2936 b3688 b3696 b4144 220.45 P 98.2 P 48.35 P 15.1 P 106.5 P 35.1 P 25 P 199.45 P 47.3 P 86.85 P 8.6 P...”

UTI89_C4742 hypothetical protein (NCBI) from Escherichia coli UTI89
S4565 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Z5749 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 34:126 / 128 (72.7%), covers 100.0% of PF13698, 110.8 bits

• Cathelicidin Peptides Restrict Bacterial Growth via Membrane Perturbation and Induction of Reactive Oxygen Species
  Rowe-Magnus, mBio 2019
  • “...facilitator superfamily transporter ycaD UTI89_C3582 1.70 7.37E07 Endonuclease yhbQ UTI89_C4612 1.71 5.00E05 Diacylglycerol kinase dgkA UTI89_C4742 1.76 2.36E03 Hypothetical protein yjeI UTI89_C4754 1.78 5.48E04 Fumarate reductase frdA UTI89_C1779 1.82 1.21E09 Chloride channel protein ynfJ UTI89_C2583 1.88 4.06E05 NUDIX hydrolase yfcD UTI89_C2573 1.89 2.63E05 5'-Deoxynucleotidase yfbR UTI89_C3050...”
• High yield production process for Shigella outer membrane particles
  Berlanda, PloS one 2012
  • “...1 hypothetical protein S2067 [S. flexneri 2a str. 2457T] yedD gi|30063370 20 1 hypothetical protein S4565 [S. flexneri 2a str. 2457T] yjeI gi|30065519 21 1 hypothetical protein SF0398 [S. flexneri 2a str. 301] ybaY gi|24111837 22 1 RpoE-regulated lipoprotein [S. flexneri 2a str. 301] SF2485 gi|24113773...”
• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...SlyB Z2655 slyB 15601 L-OM OM 31547 2607 LVGC 18 V 3 uncharacterized protein YjeI Z5749 yjeI 13064 L (hydr LS) unkn 20511 3999 MAGC 30 S 1* entericidin B membrane lipoprotein Z5754 ecnB 4809 L-IM, MPC-2 IM 11329 1749 LTAC 22 N 2* regulator in...”

YPTB0406 putative lipoprotein (NCBI) from Yersinia pseudotuberculosis IP 32953
YPO0352 putative lipoprotein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 36:127 / 128 (71.9%), covers 98.9% of PF13698, 110.3 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...conserved hypothetical protein (pseudogene. F/S) 0.66 (0.036) YPTB0391 YPO0337 putative exported protein 0.527 (< 0.001) YPTB0406 YPO0352 putative lipoprotein 1.294 (0.042) YPTB0449 YPO3527 conserved hypothetical protein 2 (< 0.001) YPTB0499 YPO3474 hypothetical protein 1.509 (0.036) YPTB0505 YPO3468 hypothetical protein 1.632 (0.026) YPTB0546 YPO0406 putative exported protein...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...hypothetical protein (pseudogene. F/S) 0.66 (0.036) YPTB0391 YPO0337 putative exported protein 0.527 (< 0.001) YPTB0406 YPO0352 putative lipoprotein 1.294 (0.042) YPTB0449 YPO3527 conserved hypothetical protein 2 (< 0.001) YPTB0499 YPO3474 hypothetical protein 1.509 (0.036) YPTB0505 YPO3468 hypothetical protein 1.632 (0.026) YPTB0546 YPO0406 putative exported protein 2.397...”

SPA4148 putative membrane protein (NCBI) from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Aligns to 29:121 / 123 (75.6%), covers 100.0% of PF13698, 105.4 bits

• Identification of in vivo-induced bacterial proteins during human infection with Salmonella enterica serotype Paratyphi A
  Alam, Clinical and vaccine immunology : CVI 2013
  • “...SPA0021 SPA0181 SPA0201 SPA0703 SPA1533 SPA1604 SPA1645 SPA3787 SPA4148 bcfA stkE stfA stcD osmE envE ycfL yifL yjeI Fimbrial subunit Putative fimbrial protein...”
  • “...and membrane (SPA1533, SPA1604, SPA1645, SPA3787, and SPA4148), energy metabolism and cellular processes (SPA0489, SPA0608, SPA0652, SPA1239, SPA1734, SPA2362,...”

FTL_0491 outer membrane lipoprotein (NCBI) from Francisella tularensis subsp. holarctica
Aligns to 24:126 / 131 (78.6%), covers 98.9% of PF13698, 83.5 bits

• Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates
  Post, mBio 2017 (no snippet)
• Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis
  Ramsey, PLoS pathogens 2015
  • “...RNAP (in the presence of rif), 70 , MglA, SspA, PigR, and HipB at the FTL_0491, FTL_0650, and FTL_0651 promoter regions as determined by ChIP-Seq. Specifically, Fig 2A shows that PigR, MglA, and SspA are found at the promoter of the FTL_0491 gene, which is an...”
  • “...(orange), MglA (brown), SspA (light pink), PigR (blue), and HipB (dark pink) (A) at the FTL_0491 promoter, which is known to be regulated by MglA, SspA, and PigR; (normalized reads are displayed on a linear scale) (B) at the FTL_0650 and FTL_0651 promoters, which are not...”

XF1971 hypothetical protein (NCBI ptt file) from Xylella fastidiosa 9a5c
Aligns to 17:100 / 103 (81.6%), covers 95.6% of PF13698, 42.7 bits

• In vitro Determination of Extracellular Proteins from Xylella fastidiosa
  Mendes, Frontiers in microbiology 2016
  • “...(heat shock protein 70) 68.5 XF2340 XF2024 Q9PB05 No No 0.396 Conserved hypothetical protein 11.6 XF1971 XF1697 - No No 0.242 Conserved hypothetical protein 18.4 XF1941 XF1669 - Yes No 0.839 Conserved hypothetical protein 34.1 XF1434 XF1183 - Yes No 0.932 Conserved hypothetical protein 46.4 XF2151...”

XAC0232 conserved hypothetical protein (NCBI ptt file) from Xanthomonas axonopodis pv. citri str. 306
Aligns to 16:99 / 102 (82.4%), covers 97.8% of PF13698, 41.4 bits

• Unravelling potential virulence factor candidates in Xanthomonas citri. subsp. citri by secretome analysis
  Ferreira, PeerJ 2016
  • “...in common by both strains. Of these, four are hypothetical proteins (XAC2562, XAC0677, XAC0223 and XAC0232), three of which contain a signal peptide sequence ( Table 1 ). Among the other nine proteins with annotated functions (Pcp, Cysteine protease, RpfN, Slp, OmpP6, Peh-1, PheA and Prolyl-peptidyl...”
  • “...1154732 + + Y Y XAC3647 pheA Chorismate mutase II 1157718 + + Y N XAC0232 Hypothetical protein VIII 1154303 + + N* N XAC1585 peptidyl-prolyl cis-trans isomerase III 1155656 + + Y N Notes. Gene_ID and Cat (primary category) according to Da Silva et al....”

XOO4208 hypothetical protein (NCBI) from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 20:103 / 106 (79.2%), covers 97.8% of PF13698, 41.3 bits

• I-SceI Endonuclease-Mediated Plant Genome Editing by Protein Transport through a Bacterial Type III Secretion System
  Yanagawa, Plants (Basel, Switzerland) 2020
  • “...previously identified 16 effector proteins in X. oryzae pv. oryzae MAFF311018 [ 12 ]. A XOO4208 ortholog named XopQ, which is one of representative effectors in Xanthomonas , is conserved in Pseudomonas and Ralstonia . We identified homologues of these effector proteins in the genome of...”
  • “...accordingly Xcc1_31290 was found to display a high level of homology (62% percent identity) to XOO4208. We decided to use a promoter and signal peptide sequence for the type III secretion system of Xcc1_31290 as an expression cassette for protein transport. Tobacco ( Nicotiana tabacum cv....”

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