Family Search for PF13698 (DUF4156)

PF13698 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YjeI / b4144 DUF4156 domain-containing lipoprotein YjeI from Escherichia coli K-12 substr. MG1655 (see 3 papers)
P0AF70 Uncharacterized protein YjeI from Escherichia coli (strain K12)
b4144 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 23:115 / 117 (79.5%), covers 100.0% of PF13698, 115.3 bits

• Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
  Reimer, Frontiers in microbiology 2021
  • “...INF Increased in tolA P0ADM4 yidQ Uncharacterized protein YidQ tolA 0.0091 INF Increased in tolA P0AF70 yjeI Uncharacterized protein YjeI tolA 0.00013 29 Increased in tolA AC, accession number; ID, identification number; INF, infinity value as the denominator in the fold change equation is zero. To...”
• Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
  Bonocora, PLoS genetics 2015
  • “...7753 8.401 IS50 4370368 2 TG GG TATCAAAG TTGC A 4370368 + b4143 groL + b4144 yjeI 464 7.795 IS51 4445887 1 CA GGC ACTGGAT TTGC T 4445887 + b4221 tamB + b4222 ytfP 30 8.931 IS52 4457537 2 AA GG AACTATTC TTGC A 4457513 +...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...yjeI b0196 b0557 b0867 b0909 b1193 b1379 b1585 b2617 b2936 b3688 b3696 b4144 220.45 P 98.2 P 48.35 P 15.1 P 106.5 P 35.1 P 25 P 199.45 P 47.3 P 86.85 P 8.6 P...”

UTI89_C4742 hypothetical protein from Escherichia coli UTI89
S4565 hypothetical protein from Shigella flexneri 2a str. 2457T
Z5749 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 34:126 / 128 (72.7%), covers 100.0% of PF13698, 115.0 bits

• Cathelicidin Peptides Restrict Bacterial Growth via Membrane Perturbation and Induction of Reactive Oxygen Species
  Rowe-Magnus, mBio 2019
  • “...facilitator superfamily transporter ycaD UTI89_C3582 1.70 7.37E07 Endonuclease yhbQ UTI89_C4612 1.71 5.00E05 Diacylglycerol kinase dgkA UTI89_C4742 1.76 2.36E03 Hypothetical protein yjeI UTI89_C4754 1.78 5.48E04 Fumarate reductase frdA UTI89_C1779 1.82 1.21E09 Chloride channel protein ynfJ UTI89_C2583 1.88 4.06E05 NUDIX hydrolase yfcD UTI89_C2573 1.89 2.63E05 5'-Deoxynucleotidase yfbR UTI89_C3050...”
• High yield production process for Shigella outer membrane particles
  Berlanda, PloS one 2012
  • “...1 hypothetical protein S2067 [S. flexneri 2a str. 2457T] yedD gi|30063370 20 1 hypothetical protein S4565 [S. flexneri 2a str. 2457T] yjeI gi|30065519 21 1 hypothetical protein SF0398 [S. flexneri 2a str. 301] ybaY gi|24111837 22 1 RpoE-regulated lipoprotein [S. flexneri 2a str. 301] SF2485 gi|24113773...”
• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...SlyB Z2655 slyB 15601 L-OM OM 31547 2607 LVGC 18 V 3 uncharacterized protein YjeI Z5749 yjeI 13064 L (hydr LS) unkn 20511 3999 MAGC 30 S 1* entericidin B membrane lipoprotein Z5754 ecnB 4809 L-IM, MPC-2 IM 11329 1749 LTAC 22 N 2* regulator in...”

C3F39_12745 DUF4156 domain-containing protein from Klebsiella pneumoniae
Aligns to 23:115 / 117 (79.5%), covers 100.0% of PF13698, 114.1 bits

• In vitro Activity of Cefepime/Avibactam Against Carbapenem Resistant Klebsiella pneumoniae and Integrative Metabolomics-Proteomics Approach for Resistance Mechanism: A Single-Center Study
  Wen, Infection and drug resistance 2023
  • “...0.00394 W1AVD0 hisA 11.09 2.19E-08 10.648 0.00352 Q6WN40 hsdM 10.035 0.000158 10.131 0.0000597 Down A0A2L0KKW3 C3F39_12745 0.089 0.000783 0.088 0.00076 Notes : a Expression trend of DEPs in CRKP compared with KPWT. b Ratio of the relative abundance of DEPs in CRKP to KPWT. Figure 5...”

YPO0352 putative lipoprotein from Yersinia pestis CO92
YPTB0406 putative lipoprotein from Yersinia pseudotuberculosis IP 32953
Aligns to 36:127 / 128 (71.9%), covers 100.0% of PF13698, 113.4 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...hypothetical protein (pseudogene. F/S) 0.66 (0.036) YPTB0391 YPO0337 putative exported protein 0.527 (< 0.001) YPTB0406 YPO0352 putative lipoprotein 1.294 (0.042) YPTB0449 YPO3527 conserved hypothetical protein 2 (< 0.001) YPTB0499 YPO3474 hypothetical protein 1.509 (0.036) YPTB0505 YPO3468 hypothetical protein 1.632 (0.026) YPTB0546 YPO0406 putative exported protein 2.397...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...conserved hypothetical protein (pseudogene. F/S) 0.66 (0.036) YPTB0391 YPO0337 putative exported protein 0.527 (< 0.001) YPTB0406 YPO0352 putative lipoprotein 1.294 (0.042) YPTB0449 YPO3527 conserved hypothetical protein 2 (< 0.001) YPTB0499 YPO3474 hypothetical protein 1.509 (0.036) YPTB0505 YPO3468 hypothetical protein 1.632 (0.026) YPTB0546 YPO0406 putative exported protein...”

STM0349 putative outer membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 19:117 / 119 (83.2%), covers 100.0% of PF13698, 111.2 bits

• Salmonella Regulator STM0347 Mediates Flagellar Phase Variation via Hin Invertase
  Wang, International journal of molecular sciences 2022
  • “...upregulated proteins, compared with WT (see Supplementary Table S1 ). The putative outer membrane lipoprotein STM0349 showed an outstanding lead in the upregulation of all proteins tested; however, its precise function still needs to be defined. We then noticed that the H1 antigen flagellin (FliC) and...”
• Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR
  Kim, Applied and environmental microbiology 2006
  • “...(bp) Annealing temp (C) 1 STM3098 423 65 STM4444 253 65 STM0349 249 65 STM4030 310 65 STM1550 187 67 STM2235 177 65 STM2630 115 65 STM2744 141 65 STM2752 203 65...”
  • “...enterica subsp. I and IIIb, and the primer pair STM0349 amplified specific PCR products with S. enterica subsp. I, II, and IIIb. Primer pair STM4030 amplified...”
• Identification and characterization of Helicobacter pylori genes essential for gastric colonization
  Kavermann, The Journal of experimental medicine 2003
  • “...hp STM0240 0486 2 hp <0.0025 STM0210 0973 2 hp <0.0009 STM0259 1525 2 hp STM0349 0758 a 2 chimp <0.0026 STM0256 1486 a 2 chimp Hp, hypothetical protein; chimp, conserved hypothetical integral membrane protein; C.I., competitive index, defined as the output ratio (mutant/wild type) divided...”

SPA4148 putative membrane protein from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Aligns to 29:121 / 123 (75.6%), covers 100.0% of PF13698, 110.3 bits

• Identification of in vivo-induced bacterial proteins during human infection with Salmonella enterica serotype Paratyphi A
  Alam, Clinical and vaccine immunology : CVI 2013
  • “...SPA0021 SPA0181 SPA0201 SPA0703 SPA1533 SPA1604 SPA1645 SPA3787 SPA4148 bcfA stkE stfA stcD osmE envE ycfL yifL yjeI Fimbrial subunit Putative fimbrial protein...”
  • “...and membrane (SPA1533, SPA1604, SPA1645, SPA3787, and SPA4148), energy metabolism and cellular processes (SPA0489, SPA0608, SPA0652, SPA1239, SPA1734, SPA2362,...”

VP2265 putative outer membrane lipoprotein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 21:108 / 110 (80.0%), covers 96.7% of PF13698, 88.8 bits

• QseC Inhibition as a Novel Antivirulence Strategy for the Prevention of Acute Hepatopancreatic Necrosis Disease (AHPND)-Causing Vibrio parahaemolyticus
  Yang, Frontiers in cellular and infection microbiology 2020
  • “...Flagellin protein FlaD VP2263 -3.51179 1.21E-32 Flagellin protein FlaA VP2264 -3.24318 1.29E-28 Flagellar protein FlaG VP2265 -3.29545 2.24E-29 Flagellar cap protein FliD VP2266 -3.3816 2.61E-19 Polar flagellar rod protein FlaI VP2267 -2.97178 1.54E-22 Flagellar biosynthesis protein FliS 6 VP1657 -1.99881 3.80E-12 Type III secretion host injection...”

FTL_0491 outer membrane lipoprotein from Francisella tularensis subsp. holarctica
Aligns to 24:126 / 131 (78.6%), covers 98.9% of PF13698, 83.3 bits

• Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates
  Post, mBio 2017
  • “...BLAST searches against Schu S4 with the putative outer membrane lipoprotein from LVS (Q2A4T9; gene, FTL_0491). This protein was observed in one biological replicate in both the LVS inner and outer membrane samples. The proteins that differ between the two strains may be interesting targets for...”
• Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis
  Ramsey, PLoS pathogens 2015
  • “...RNAP (in the presence of rif), 70 , MglA, SspA, PigR, and HipB at the FTL_0491, FTL_0650, and FTL_0651 promoter regions as determined by ChIP-Seq. Specifically, Fig 2A shows that PigR, MglA, and SspA are found at the promoter of the FTL_0491 gene, which is an...”
  • “...(orange), MglA (brown), SspA (light pink), PigR (blue), and HipB (dark pink) (A) at the FTL_0491 promoter, which is known to be regulated by MglA, SspA, and PigR; (normalized reads are displayed on a linear scale) (B) at the FTL_0650 and FTL_0651 promoters, which are not...”

XF1971 hypothetical protein from Xylella fastidiosa 9a5c
Aligns to 17:100 / 103 (81.6%), covers 96.7% of PF13698, 50.3 bits

• In vitro Determination of Extracellular Proteins from Xylella fastidiosa
  Mendes, Frontiers in microbiology 2016
  • “...(heat shock protein 70) 68.5 XF2340 XF2024 Q9PB05 No No 0.396 Conserved hypothetical protein 11.6 XF1971 XF1697 - No No 0.242 Conserved hypothetical protein 18.4 XF1941 XF1669 - Yes No 0.839 Conserved hypothetical protein 34.1 XF1434 XF1183 - Yes No 0.932 Conserved hypothetical protein 46.4 XF2151...”

XAC0232 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 16:99 / 102 (82.4%), covers 97.8% of PF13698, 49.5 bits

• Unravelling potential virulence factor candidates in Xanthomonas citri. subsp. citri by secretome analysis
  Ferreira, PeerJ 2016
  • “...in common by both strains. Of these, four are hypothetical proteins (XAC2562, XAC0677, XAC0223 and XAC0232), three of which contain a signal peptide sequence ( Table 1 ). Among the other nine proteins with annotated functions (Pcp, Cysteine protease, RpfN, Slp, OmpP6, Peh-1, PheA and Prolyl-peptidyl...”
  • “...1154732 + + Y Y XAC3647 pheA Chorismate mutase II 1157718 + + Y N XAC0232 Hypothetical protein VIII 1154303 + + N* N XAC1585 peptidyl-prolyl cis-trans isomerase III 1155656 + + Y N Notes. Gene_ID and Cat (primary category) according to Da Silva et al....”

XOO4208 hypothetical protein from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 20:103 / 106 (79.2%), covers 97.8% of PF13698, 49.0 bits

• I-SceI Endonuclease-Mediated Plant Genome Editing by Protein Transport through a Bacterial Type III Secretion System
  Yanagawa, Plants (Basel, Switzerland) 2020
  • “...previously identified 16 effector proteins in X. oryzae pv. oryzae MAFF311018 [ 12 ]. A XOO4208 ortholog named XopQ, which is one of representative effectors in Xanthomonas , is conserved in Pseudomonas and Ralstonia . We identified homologues of these effector proteins in the genome of...”
  • “...accordingly Xcc1_31290 was found to display a high level of homology (62% percent identity) to XOO4208. We decided to use a promoter and signal peptide sequence for the type III secretion system of Xcc1_31290 as an expression cassette for protein transport. Tobacco ( Nicotiana tabacum cv....”

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