PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13898 (DUF4205)

PF13898.6 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_115598 probable ubiquitin carboxyl-terminal hydrolase MINDY-4 from Homo sapiens
Q4G0A6 Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 from Homo sapiens
Aligns to 416:752 / 757 (44.5%), covers 100.0% of PF13898, 464.9 bits

A8MYZ0 Inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B from Homo sapiens
Aligns to 106:455 / 460 (76.1%), covers 100.0% of PF13898, 428.9 bits

K7N7A8 Aquaporin-1 (Fragment) from Homo sapiens
Aligns to 1:213 / 449 (47.4%), covers 62.2% of PF13898, 290.8 bits

B6SW97 Deubiquitinating enzyme MINDY-3 from Zea mays
Aligns to 133:442 / 620 (50.0%), covers 81.0% of PF13898, 235.0 bits

AT1G43690 ubiquitin interaction motif-containing protein (RefSeq) from Arabidopsis thaliana
Aligns to 115:423 / 599 (51.6%), covers 80.1% of PF13898, 228.4 bits

MINY3_HUMAN / Q9H8M7 Ubiquitin carboxyl-terminal hydrolase MINDY-3; Dermal papilla-derived protein 5; Deubiquitinating enzyme MINDY-3; Protein CARP; EC 3.4.19.12 from Homo sapiens (Human) (see 3 papers)
Aligns to 20:315 / 445 (66.5%), covers 75.8% of PF13898, 191.6 bits

PF3D7_0630600 conserved protein, unknown function from Plasmodium falciparum 3D7
3 alignments in 222:798 / 935 (37.8%), covering up to 40.1% of PF13898, 189.2 bits

NP_001305259 ubiquitin carboxyl-terminal hydrolase MINDY-3 isoform b precursor from Homo sapiens
Aligns to 2:142 / 272 (51.8%), covers 36.6% of PF13898, 142.2 bits

B4E220 Aquaporin-1 from Homo sapiens
Aligns to 1:93 / 329 (28.3%), covers 27.7% of PF13898, 119.8 bits

GL50803_7349 Ubiquitin from Giardia lamblia ATCC 50803
Aligns to 332:582 / 587 (42.8%), covers 64.0% of PF13898, 103.0 bits

Or search for genetic data about PF13898 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory