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Family Search for PF13962 (PGG)

PF13962 hits 43 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Sb10g010770 No description from Sorghum bicolor
5 alignments in 70:1123 / 1181 (48.3%), covering up to 98.3% of PF13962, 533.7 bits

TC 9.A.43.1.1 / Q2MJU2 Cd2+ tolerance factor, TaTM20, a hydrophobic polypeptide of 889 amino acids, containing 20 transmembrane domains arranged as a 5-fold internal repeating unit of 4 transmembrane domains each from Triticum aestivum (Wheat) (see paper)
5 alignments in 29:849 / 889 (65.2%), covering up to 98.3% of PF13962, 512.6 bits

K7U8Z5 Embryogenesis transmembrane protein-like from Zea mays
5 alignments in 7:776 / 821 (70.0%), covering up to 98.3% of PF13962, 484.1 bits

Sb01g039370 No description from Sorghum bicolor
4 alignments in 59:608 / 675 (58.2%), covering up to 98.3% of PF13962, 304.5 bits

GRMZM2G034318 embryogeneis transmembrane protein from Zea mays
Aligns to 89:203 / 275 (41.8%), covers 99.1% of PF13962, 122.3 bits

B6U4J6 Embryogenesis transmembrane protein from Zea mays
Aligns to 91:201 / 291 (38.1%), covers 99.1% of PF13962, 113.6 bits

XP_006476047 ankyrin repeat-containing protein At5g02620-like from Citrus sinensis
Aligns to 394:502 / 591 (18.4%), covers 98.3% of PF13962, 110.9 bits

AT4G03500 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 471:582 / 652 (17.2%), covers 97.4% of PF13962, 110.4 bits

AT5G50140 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 357:468 / 535 (20.9%), covers 98.3% of PF13962, 109.1 bits

LOC100244024 ankyrin repeat-containing protein At5g02620 from Vitis vinifera
Aligns to 400:508 / 601 (18.1%), covers 98.3% of PF13962, 108.5 bits

AT1G10340 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 398:509 / 578 (19.4%), covers 98.3% of PF13962, 106.7 bits

AT4G03460, NP_192255 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 506:617 / 677 (16.5%), covers 97.4% of PF13962, 105.0 bits

AT5G60070 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 360:477 / 548 (21.5%), covers 98.3% of PF13962, 103.3 bits

AT2G31820 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 471:585 / 662 (17.4%), covers 98.3% of PF13962, 101.9 bits

AT5G02620 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
NP_001331983 ankyrin-like1 from Arabidopsis thaliana
Aligns to 343:460 / 524 (22.5%), covers 99.1% of PF13962, 101.8 bits

AT1G34050 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 389:500 / 573 (19.5%), covers 96.6% of PF13962, 101.5 bits

AT5G54710 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 417:528 / 598 (18.7%), covers 98.3% of PF13962, 101.3 bits

LOC109017990 uncharacterized protein LOC109017990 from Juglans regia
Aligns to 627:741 / 792 (14.5%), covers 98.3% of PF13962, 101.1 bits

AT5G54700 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 207:319 / 480 (23.5%), covers 97.4% of PF13962, 100.9 bits

AT5G35810 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 174:293 / 347 (34.6%), covers 98.3% of PF13962, 100.0 bits

ITN1_ARATH / Q9C7A2 Ankyrin repeat-containing protein ITN1; Protein INCREASED TOLERANCE TO NACL from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT3G12360 ITN1 (INCREASED TOLERANCE TO NACL); protein binding (RefSeq) from Arabidopsis thaliana
NP_187842 Ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 412:519 / 590 (18.3%), covers 99.1% of PF13962, 98.9 bits

AT5G04730 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 437:551 / 603 (19.1%), covers 99.1% of PF13962, 96.9 bits

AT3G18670 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 432:545 / 598 (19.1%), covers 98.3% of PF13962, 96.0 bits

AT4G03440 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 547:658 / 751 (14.9%), covers 98.3% of PF13962, 95.7 bits

LOC8057765 ankyrin repeat-containing protein NPR4 from Sorghum bicolor
Aligns to 377:484 / 556 (19.4%), covers 99.1% of PF13962, 95.0 bits

ACD6_ARATH / Q8LPS2 Protein ACCELERATED CELL DEATH 6 from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
NP_567430 ankyrin repeat family protein from Arabidopsis thaliana
AT4G14400 ACD6 (ACCELERATED CELL DEATH 6); protein binding (RefSeq) from Arabidopsis thaliana
Aligns to 484:597 / 670 (17.0%), covers 96.6% of PF13962, 94.9 bits

AT4G03450 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 453:564 / 641 (17.5%), covers 97.4% of PF13962, 94.7 bits

AT4G14390 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 512:623 / 694 (16.1%), covers 96.6% of PF13962, 89.2 bits

AT2G01680 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 344:455 / 532 (21.1%), covers 98.3% of PF13962, 88.6 bits

AT4G03490 protein binding (RefSeq) from Arabidopsis thaliana
Aligns to 389:499 / 662 (16.8%), covers 97.4% of PF13962, 82.6 bits

AT4G03470 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 490:601 / 683 (16.4%), covers 95.7% of PF13962, 82.1 bits

GRMZM2G088778 uncharacterized protein LOC100501682 from Zea mays
Aligns to 463:571 / 663 (16.4%), covers 97.4% of PF13962, 81.8 bits

XP_003593806 uncharacterized protein LOC11446096 from Medicago truncatula
Aligns to 486:599 / 665 (17.1%), covers 97.4% of PF13962, 76.9 bits

AT4G03480 protein binding (RefSeq) from Arabidopsis thaliana
Aligns to 583:655 / 655 (11.1%), covers 63.8% of PF13962, 72.8 bits

AT4G05040 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 494:571 / 572 (13.6%), covers 64.7% of PF13962, 70.2 bits

AT3G13950 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 27:154 / 207 (61.8%), covers 98.3% of PF13962, 64.6 bits

AT4G11000 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 246:390 / 406 (35.7%), covers 63.8% of PF13962, 56.6 bits

NP_974540 ankyrin repeat protein from Arabidopsis thaliana
AT4G13266 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 29:157 / 221 (58.4%), covers 96.6% of PF13962, 52.7 bits

AT1G14500 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 283:397 / 436 (26.4%), covers 64.7% of PF13962, 45.3 bits

AT2G24600 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 398:455 / 548 (10.6%), covers 40.5% of PF13962, 40.3 bits

AT5G15500 ankyrin repeat family protein (RefSeq) from Arabidopsis thaliana
Aligns to 284:386 / 457 (22.5%), covers 64.7% of PF13962, 40.2 bits

AT1G03660 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 2:89 / 107 (82.2%), covers 67.2% of PF13962, 39.1 bits

LOC107766257 receptor-like protein kinase HSL1 from Nicotiana tabacum
Aligns to 45:136 / 393 (23.4%), covers 72.4% of PF13962, 29.8 bits

Or search for genetic data about PF13962 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory