Family Search for PF13962 (PGG)

Running HMMer for PF13962

PF13962 hits 43 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Sb10g010770 No description from Sorghum bicolor
5 alignments in 70:1123 / 1181 (48.3%), covering up to 98.3% of PF13962, 533.7 bits

• Genome-wide association mapping of quantitative traits in a breeding population of sugarcane
  Racedo, BMC plant biology 2016
  • “...protein 85/87(98%) 6E-35 Sb10g006890 10 XM_002437984.1 M14 * * 427 blastn hypothetical protein 23/24(96%) 0.43 Sb10g010770 10 XM_002438218.1 M188 * * * 578 blastn hypothetical protein 29/34(85%) 0.59 Sb10g023910 10 XM_002437224.1 M45 ** * 749 blastn alpha kafirin 79/98(81%) 3.00E-18 unassigned Y17556.1 M181 ** * 749...”

TC 9.A.43.1.1 / Q2MJU2 Cd2+ tolerance factor, TaTM20, a hydrophobic polypeptide of 889 amino acids, containing 20 transmembrane domains arranged as a 5-fold internal repeating unit of 4 transmembrane domains each from Triticum aestivum (Wheat) (see paper)
5 alignments in 29:849 / 889 (65.2%), covering up to 98.3% of PF13962, 512.6 bits

• substrates: Cd2+
  tcdb comment: The 4 TMS repeat has been referred to as the pfam13962 or PGG domain. The PGG domain is named for the conserved sequence motif found at the start of the domain.The protein appears to function as a Cd2+ exporter, possibly using the pmf and functioning as a secondary carrier (see family description)

K7U8Z5 Embryogenesis transmembrane protein-like from Zea mays
5 alignments in 7:776 / 821 (70.0%), covering up to 98.3% of PF13962, 484.1 bits

• Quantitative Proteomic Analyses Identify ABA-Related Proteins and Signal Pathways in Maize Leaves under Drought Conditions
  Zhao, Frontiers in plant science 2016
  • “...protein 0.979 0.975 1.001 1.555 1.569 1.577 0.985 0.810 1.567 0.001 0.000 Down-regulated by ABA K7U8Z5 Uncharacterized protein 0.948 0.944 0.970 1.485 1.475 1.515 0.954 0.474 1.492 0.001 0.000 Down-regulated by ABA K7V0W5 Uncharacterized protein 0.739 0.735 0.761 2.030 2.059 2.060 0.745 0.012 2.050 0.000 0.000...”

Sb01g039370 No description from Sorghum bicolor
4 alignments in 59:608 / 675 (58.2%), covering up to 98.3% of PF13962, 304.5 bits

• Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum
  Gelli, BMC plant biology 2017
  • “...2.94 Sb01g037940 1 61,514,738 7.80 PYR1-like 6 Sb01g038720 1 62,214,256 7.04 lysine histidine transporter 1 Sb01g039370 1 62,800,020 5.56 Ankyrin repeat family protein Sb01g039390 1 62,807,357 6.51 heat shock cognate protein 70-1 Sb01g041180 1 64,497,962 5.30 heat shock protein 21 Sb06g014250 6 39,313,831 4.94 multidrug resistance-associated...”

GRMZM2G034318 embryogeneis transmembrane protein from Zea mays
Aligns to 89:203 / 275 (41.8%), covers 99.1% of PF13962, 122.3 bits

• Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm
  Chen, G3 (Bethesda, Md.) 2016
  • “...9.01 11,972,127 0.14 9.39E04 0.014 GRMZM2G467169 3 UTR S27 PZE-109031748 9.03 37,162,489 0.23 5.06E04 0.015 GRMZM2G034318 Promoter S28 PZE-109031963 9.03 37,423,712 0.17 6.24E05 0.020 Intergenic S29 PZE-109050938 9.03 85,677,755 0.24 3.63E04 0.016 GRMZM2G095206 Exon Glucose/ribitol dehydrogenase S30 PZE-109050944 9.03 85,678,508 0.24 4.77E04 0.016 GRMZM2G095206 5 UTR...”

B6U4J6 Embryogenesis transmembrane protein from Zea mays
Aligns to 91:201 / 291 (38.1%), covers 99.1% of PF13962, 113.6 bits

• Comparative Proteomic and Physiological Analyses of Two Divergent Maize Inbred Lines Provide More Insights into Drought-Stress Tolerance Mechanisms
  Zenda, International journal of molecular sciences 2018
  • “...67 A0A1D6IIC2 ZEAMMB73_Zm00001d021999 Nuclear transport factor 2 (NTF2) family protein 5.6 1 0.77 0.0092 68 B6U4J6 Zm00001d045774 Embryogenesis transmembrane protein 4.5 1 0.77 0.0258 69 C0P626 Zm00001d011454 Carbonic anhydrase 74.3 13 0.77 0.0272 Nitrogen metabolism 70 Q9M7E3 Zm00001d009868 Elongation factor 1-alpha 37.8 13 0.76 0.0045 RNA...”

XP_006476047 ankyrin repeat-containing protein At5g02620-like from Citrus sinensis
Aligns to 394:502 / 591 (18.4%), covers 98.3% of PF13962, 110.9 bits

• Mechanisms on boron-induced alleviation of aluminum-toxicity in Citrus grandis seedlings at a transcriptional level revealed by cDNA-AFLP analysis
  Zhou, PloS one 2015
  • “...COP9 signalosome complex subunit 5a 89% 1.00 c 1.80 b 2.53 a 0.24 d 141-9 XP_006476047 6.E-12 68.9 Citrus sinensis 183 Ankyrin repeat-containing protein At3g12360-like 79% 1.00 a 0.33 b 0.35 b 0.35 b 87-7 XP_006468682 2.E-25 107 Citrus sinensis 232 WD repeat-containing protein 26-like isoform...”

AT4G03500 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 471:582 / 652 (17.2%), covers 97.4% of PF13962, 110.4 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this study are AtANKTM4-1 , AtANKTM4-2 ,...”
• Gaining Insight into Exclusive and Common Transcriptomic Features Linked to Drought and Salinity Responses across Fruit Tree Crops
  Benny, Plants (Basel, Switzerland) 2020
  • “...protein Phosphorylation Biological process AT4G32850 Polynucleotide adenylyl transferase 4 Nucleotidyltransferase activity Molecular function Up-Regulated Genes AT4G03500 Ankyrin repeat family protein Membrane Cellular component AT1G15520 Pleiotropic drug resistance 12 Abscisic acid transport Biological process AT1G02520 ATP-binding cassette B11 Transmembrane transport Biological process AT3G06880 Transducin/ tryptophan-aspartic (WD)40 repeat-like...”
• Re-analysis of RNA-seq transcriptome data reveals new aspects of gene activity in Arabidopsis root hairs
  Li, Frontiers in plant science 2015
  • “...regions and another one in the CDS regions (Table 3 ). Another three genes AT3G19050, AT4G03500, and AT5G27680 were shown to carry RHEs in both introns and CDS regions but not in the -3000 bp region (Table 3 ). Table 3 Distribution of RHE motif in...”

AT5G50140 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 357:468 / 535 (20.9%), covers 98.3% of PF13962, 109.1 bits

• Strigolactone regulates anthocyanin accumulation, acid phosphatases production and plant growth under low phosphate condition in Arabidopsis
  Ito, PloS one 2015
  • “...(LTI65) leaf senescence 10.33166331 0.043559123 AT2G47520 HYPOXIA RESPONSIVE ERF (HRE2) response to anoxia -24.73233108 0.006948727 AT5G50140 Ankyrin repeat family protein unknown 9.943750279 0.026171042 AT3G25240 unknown protein unknown -24.15183632 0.003700508 AT2G23190 CYP81D7 oxidation-reduction process 9.427410954 0.019394508 AT3G55240 overexpression leads to PEL phenotype developmental process -22.18062111 0.000494586 AT5G05280...”

LOC100244024 ankyrin repeat-containing protein At5g02620 from Vitis vinifera
Aligns to 400:508 / 601 (18.1%), covers 98.3% of PF13962, 108.5 bits

• Transcriptome analysis revealed the expression levels of genes related to abscisic acid and auxin biosynthesis in grapevine (Vitis vinifera L.) under root restriction
  Wang, Frontiers in plant science 2022
  • “...and nR12. For miR167a , we found that the target gene ankyrin repeat-containing protein ( LOC100244024 ) showed upregulated expression in RR7, nR12, and RR12. Moreover, the expression of miR482 in nR7 and nR12 was upregulated, and its target gene disease resistance protein RPM1 ( LOC100854691...”

AT1G10340 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 398:509 / 578 (19.4%), covers 98.3% of PF13962, 106.7 bits

• Transcriptome analysis at mid-stage seed development in litchi with contrasting seed size
  Pathak, 3 Biotech 2022
  • “...kinase3 (AT4G00710) and ankyrin repeat family protein (AT1G10340) were down-regulated in smallseeded litchi during different stages of seed development from 0...”
• Direct comparison of Arabidopsis gene expression reveals different responses to melatonin versus auxin
  Zia, BMC plant biology 2019
  • “...PCR1 5.5E-03 6.55 2.4E-2 4.33 AT4G02520 Glutathione-S transferase GSTF2 1.3E-03 1.82 4.9E-5 1.80 Miscellaneous (4) AT1G10340 Ankyrin repeat family protein 1.0E-02 2.37 2.1E-2 1.7 AT2G44480 Beta glucosidase 17, BGLU17 3.3E-02 1.81 1.2E-3 1.84 AT5G55450 Bifunctional inhibitor/lipid transfer, ATLTP4.4 3.9E-04 1.47 1.0E-02 3.01 AT5G53830 VQ-motif containing protein,...”
• Analysis of the herbicidal mechanism of 4-hydroxy-3-methoxy cinnamic acid ethyl ester using iTRAQ and real-time PCR
  Zhang, Journal of proteomics 2017 (PubMed)
  • “...enhancer protein 3-1, while low amount of AT1G10340 protein affected the catabolic process of the photosystemII-associated light-harvesting complex II. We...”
  • “...proteins 3.4 Expression levels of AT4G21280 and AT1G10340 4 Conclusions Acknowledgments Appendix A Supplementary data References ABRAMOVIC 2013 166 171 B...”
• Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis
  Bricchi, PloS one 2012
  • “...family protein 7.87 2.65 At5g55460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 6.97 4.87 At1g10340 ankyrin repeat family protein 6.72 2.87 At4g03450 ankyrin repeat family protein 5.44 3.23 At2g47130 short-chain dehydrogenase/reductase (SDR3) 5.00 2.96 At1g23840 unknown protein located in endomembrane system 3.50 2.97 At3g61280 unknown...”
• DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana
  Fulton, PLoS genetics 2009
  • “...to UV-B, regulation of anthocyanin biosynthetic process Protease At3g51330 Aspartyl protease family protein Protein binding At1g10340 Ankyrin repeat family protein Protein binding At4g14365 Zinc finger (C3HC4-type RING finger) family protein/ankyrin repeat family protein Protein kinase At4g11890 Protein kinase family protein Protein kinase At4g23150 Protein kinase family...”

AT4G03460, NP_192255 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 506:617 / 677 (16.5%), covers 97.4% of PF13962, 105.0 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...ANKTMs in class a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this study...”
• The phosphoproteome in regenerating protoplasts from Physcomitrella patens protonemata shows changes paralleling postembryonic development in higher plants
  Wang, Journal of experimental botany 2014
  • “...Unknown LASS#LGHVYS#LAGVS#R C91 28.3 9.39 NP_196816 Peptidyl-prolyl cis-trans isomerase CYP202 Chloroplast MAT#LS#M*TLSNPK C92 74.0 7.57 NP_192255 Ankyrin repeat family protein Unknown TMWQHSNNGS#S#STS#TLASK C93 46.9 9.73 NP_566289 PAPA-1-like family protein/zinc finger (HIT type) family protein Chloroplast T#LQT#NSEAGTYTK C94 32.1 9.42 NP_199935 Ubiquinol-cytochrome C chaperone family protein Mitochondrion...”

AT5G60070 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 360:477 / 548 (21.5%), covers 98.3% of PF13962, 103.3 bits

• Mapping Genetic Variation in Arabidopsis in Response to Plant Growth-Promoting Bacterium Azoarcus olearius DQS-4T
  Plucani, Microorganisms 2023
  • “...10 9 Flavonol synthase 1 5 At5G35630 13833427 2.63 10 8 Glutamine synthetase 2 5 At5G60070 24191284 1.57 10 7 Ankyrin repeat family protein...”

AT2G31820 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 471:585 / 662 (17.4%), covers 98.3% of PF13962, 101.9 bits

• Identification of Quantitative Trait Locus and Candidate Genes for Drought Tolerance in a Soybean Recombinant Inbred Line Population
  Ouyang, International journal of molecular sciences 2022
  • “...nucleolar MIF4G domain-containing protein 1-like AT5G17930 unknown Glyma.16G044600 acetyl-coenzyme A synthetase-like AT5G36880 ACS Glyma.16G038200 ankyrin-3-like AT2G31820 unknown...”
• SOBIR1/EVR prevents precocious initiation of fiber differentiation during wood development through a mechanism involving BP and ERECTA
  Milhinhos, Proceedings of the National Academy of Sciences of the United States of America 2019 (secret)
• A Small RNA-Mediated Regulatory Network in Arabidopsis thaliana Demonstrates Connectivity Between phasiRNA Regulatory Modules and Extensive Co-Regulation of Transcription by miRNAs and phasiRNAs
  Vargas-Asencio, Frontiers in plant science 2019
  • “.... gene + AT2G26975 Ctr copper transporter family 315 Chr2 13529851 13530171 . gene + AT2G31820 Ankyrin repeat family protein 320 Chr3 343230 343814 . gene - AT3G02020 Aspartate kinase 3 584 Chr3 3584608 3585005 . gene - AT3G11410 Protein phosphatase 2CA 397 Chr3 4341697 4341988...”
• Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements
  Timms, Genetics 2006
  • “...to a 1.7-Mb block on AtII (At2g27510, At2g28000, At2g31820, At2g28400, and At2g27500, respectively). Three loci (LK1322, LK1436, and LK1337) align with an...”

NP_001331983 ankyrin-like1 from Arabidopsis thaliana
AT5G02620 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 343:460 / 524 (22.5%), covers 99.1% of PF13962, 101.8 bits

• Distribution of an ankyrin-repeat protein on the endoplasmic reticulum in Arabidopsis.
  Wei, Journal of integrative plant biology 2009 (PubMed)
  • GeneRIF: AtANK1 protein was mainly localized to the membrane of the endoplasmic reticulum and might be involved in endoplasmic reticulum-related protein localization.
• Role of Phytochromes in Red Light-Regulated Alternative Splicing in Arabidopsis thaliana: Impactful but Not Indispensable
  Careno, Cells 2023
  • “...( a ) TTM1 (AT1G73980), ( b ) SMD1a (AT3G07590), and ( c ) ANK1 (AT5G02620). The coverage plots were generated by merging data from three independent biological replicates. ( d f ) Mean percentage spliced-in (PSI) or mean percentage intron retention (PIR) values for each...”
• The ankyrin repeat gene family in Capsicum spp: Genome-wide survey, characterization and gene expression profile
  Lopez-Ortiz, Scientific reports 2020
  • “...were classified in the ANK-U subfamily, and the locus CC.CCv1.2.scaffold31.147 ( CcANK65 ), homolog of At5g02620, was a member of the ANK-TM subfamily. Members of the ANK-TM family such as AKT1 , which contains five ANK repeats and several transmembrane domains, play a key role in...”

AT1G34050 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 389:500 / 573 (19.5%), covers 96.6% of PF13962, 101.5 bits

• Functional and structural characterization of a cation-dependent O-methyltransferase from the cyanobacterium Synechocystis sp. strain PCC 6803
  Kopycki, The Journal of biological chemistry 2008
  • “...A. thaliana with the UV data and expected At1g34050), P22734 (rat catechol OMT). specificities of cation-dependent OMTs (Tables 1 and 2). Combined use of...”

AT5G54710 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 417:528 / 598 (18.7%), covers 98.3% of PF13962, 101.3 bits

• MLPA-Based Analysis of Copy Number Variation in Plant Populations
  Samelak-Czajka, Frontiers in plant science 2017
  • “..., and AT5G61700 ) or duplications and deletions ( AT1G27570, AT1G52950, AT3G21960, AT4G27080 , and AT5G54710 ). Additionally, gene AT5G09590 overlaps CNV only partially, whereas AT1G52950, AT5G54710 , and AT1G27570 are members of multigene families and are localized in the regions of high structural diversity (manifested...”
  • “...AT5G09590 Multiallelic; part of the gene c mlpaK1; mlpaK2 188 nt 102 nt Chr5:22228424..22228479 Chr5:22229438..22229488 AT5G54710 Multiallelic b; c mlpaL 132 nt Chr5:24796111..24796161 AT5G61700 Multiallelic c The initial information about the gene CNV status comes from the following resources: a, Zmienko et al. (2016) ; b,...”

LOC109017990 uncharacterized protein LOC109017990 from Juglans regia
Aligns to 627:741 / 792 (14.5%), covers 98.3% of PF13962, 101.1 bits

• Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)
  Bernard, BMC genomics 2020
  • “...20,831,267 - 20,865,013 (33kb) / Solid spine of LD 109,017,990 20,831,874 - 20,834,977 uncharacterized protein LOC109017990 Budbreak date AX-171179714 1 6,514,832 6,511,521 - 6,528,313 (16kb) / Solid spine of LD 108,987,988 6,512,784 - 6,520,863 uncharacterized protein LOC108987988 Budbreak date AX-171557178 2 36,586,423 36,535,050 - 36,613,482 (78kb)...”

AT5G54700 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 207:319 / 480 (23.5%), covers 97.4% of PF13962, 100.9 bits

• Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway
  Miki, Scientific reports 2017
  • “...repeats targeted by CRISPR/Cas9. We targeted three distinct endogenous repetitive sequences within the At1g31290 and At5g54700 genes using the CRISPR/Cas9 system. At1g31290 contains two highly homologous but not identical repeats, a 5x repeat of 57bp and a 10x repeat of 24bp (Supplementary Figure S4 ), and...”
  • “...the ( A ) At1g31290 repeat1, ( B ) At1g31290 repeat2, and ( C ) At5g54700, respectively. The top gray and black horizontal bars represent the repeats, and the CRISPR/Cas9 target sites are indicated by arrows. The sequence of the repeats is below the gray/black schematic....”
• Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana
  Ma, PloS one 2017
  • “..., AT3G52830 , AT4G04030 , AT4G08160 , AT4G14365 , AT5G43525 , AT5G50480 , AT5G54410 , AT5G54700 and AT5G65005 ) ( S18 Fig ). Summarily, the result indicates that a portion of PASRs and TASRs are likely to be processed from dsRNA precursors. DCL-, RDR- and Pol...”
  • “..., AT3G41762 , AT3G52830 , AT4G04030 , AT4G08160 , AT4G14365 , AT5G43525 , AT5G50480 , AT5G54700 and AT5G65005 ( S20 Fig ). Site-specific DNA methylation signals detected on the genes with PASR or TASR peaks According to the above results, interesting features were observed for several...”

AT5G35810 hypothetical protein from Arabidopsis thaliana
Aligns to 174:293 / 347 (34.6%), covers 98.3% of PF13962, 100.0 bits

• Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements
  Dong, Genome biology 2012
  • “...DNA/MuDr 2.8 kb 1.8 kb ATTTG NO AT4G09143 Rep_Col AT4G09146 LTR/Copia NA NA NA Node AT5G35810 Rep_Col AT5G35820 LTR/Copia 6.6 kb 1.0 kb ATACCT NO AT5G42640 Rep_Col AT5G42645 LTR/Copia 7.9 kb 3.0 kb CCGCA NO AT4G20480 Exp_Col AT4G20490 LTR/GYPSY NA NA NA AT4G10865 AT4G10870 Rep_Col NO...”
  • “...clean absence/presence polymorphism is AT5G35820, which is missing in L er while the flanking neighbors AT5G35810 (L er -specific H3K27me3 target) and AT5G35830 (common H3K27me3 target) are highly similar between the two accessions (Figure 5a ; Figure S4 in Additional file 1 ). For intact polymorphic...”

ITN1_ARATH / Q9C7A2 Ankyrin repeat-containing protein ITN1; Protein INCREASED TOLERANCE TO NACL from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_187842 Ankyrin repeat family protein from Arabidopsis thaliana
AT3G12360 ITN1 (INCREASED TOLERANCE TO NACL); protein binding from Arabidopsis thaliana
Aligns to 412:519 / 590 (18.3%), covers 99.1% of PF13962, 98.9 bits

• function: Involved in salt stress tolerance. May act through abscisic acid (ABA) signaling pathways and promote reactive oxygen species (ROS) production.
  subunit: Interacts with REM19/RTV1.
  disruption phenotype: No visible phenotype under normal growth conditions, but mutant seedlings show increased salt-stress tolerance.
• Interaction between a plasma membrane-localized ankyrin-repeat protein ITN1 and a nuclear protein RTV1.
  Sakamoto, Biochemical and biophysical research communications 2012 (PubMed)
  • GeneRIF: These findings suggest that RTV1 and ITN1 regulate the subcellular localization of each other.
• Transcriptome-wide Identification of Nine Tandem Repeat Protein Families in Roselle (<i>Hibiscus sabdariffa</i> L.)
  Yong, Tropical life sciences research 2024 (no snippet)
• A Large-Scale Genomic Association Analysis Identifies the Candidate Genes Regulating Salt Tolerance in Cucumber (Cucumis sativus L.) Seedlings
  Liu, International journal of molecular sciences 2022
  • “...encodes an ankyrin repeat family protein and the homologous gene in Arabidopsis is ITN1 ( AT3G12360 ). ITN1 encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance and may act through abscisic acid (ABA) signaling pathways and promote reactive...”
• The chromatin-modifying protein HUB2 is involved in the regulation of lignin composition in xylem vessels
  Zhang, Journal of experimental botany 2020
  • “...), RD21 ( At1g47128 ), XCP2 ( At1g20850 ), At2g05920 , At4g24620 , ITN ( At3g12360 ), At1g63770 , At2g25740 , At3g07340 , At1g60070 , At5g23110 , At5g07400 , At1g56000 , At5g07740 , At1g42430 , and At5g22450 . Results PRN2 interacts with HISTONE MONOUBIQUITINATION2 (HUB2) in...”
• Development of KASP Markers and Identification of a QTL Underlying Powdery Mildew Resistance in Melon (Cucumis melo L.) by Bulked Segregant Analysis and RNA-Seq
  Cao, Frontiers in plant science 2020
  • “...and 12D-1 in parallel. Combination of the results from BSA-Seq and RNA-Seq suggested that the At3g12360 -like gene MELO3C002434 , which encodes an ANK protein was the most likely candidate gene to confer PM resistance, because only this gene was significantly more highly expressed in the...”
• Pathogen recognition in compatible plant-microbe interactions
  Rezzonico, Scientific reports 2017
  • “...0.000959904 0.00612349 897 Solyc12g096490.1.1 GDU1 BCspec down 5.3 4.39E-06 5.97E-05 495 Solyc02g068670.1.1 Ankyrin repeat-containing protein At3g12360 PIspec up 4.4 7.93E-18 1.54E-14 1704 Solyc07g056210.2.1 Unknown Protein PIspec up 4.4 1.02E-17 1.64E-14 456 Solyc08g062490.2.1 WRKY transcription factor 16 PIspec up 3.0 3.83E-10 1.13E-07 546 Solyc01g079140.2.1 Unknown Protein PIspec...”
• Transcriptional profiling unravels potential metabolic activities of the olive leaf non-glandular trichome
  Koudounas, Frontiers in plant science 2015
  • “...are shown in Table S3 . Among them, an olive homolog of the Arabidopsis ITN1 (At3g12360), putatively involved in salt stress tolerance, was detected (Sakamoto et al., 2008 ). A unigene showing high homology to the Arabidopsis HOS15 (high expression of osmotically responsive gene 15, At5g67320)...”
• Genome-wide discovery and analysis of phased small interfering RNAs in Chinese sacred lotus
  Zheng, PloS one 2014
  • “...NNU_002459 1.5 Similar to RGA4 Putative disease resistance protein RGA4 sf_107_1_siR1 NNU_005527 1.5 Similar to At3g12360 Ankyrin repeat-containing protein sf_87_1_siR3 NNU_018017 1.5 Similar to RPPL1 Putative disease resistance sf_170_1_siR25 NNU_012692 1.5 Similar to RGA3 Putative disease resistance protein RGA3 sf_90_1_siR4 NNU_018784 1.5 Protein of unknown function...”
• Chestnut resistance to the blight disease: insights from transcriptome analysis
  Barakat, BMC plant biology 2012
  • “...26 1.89 manganese superoxide dismutase (MSD1) CCall_contig3523_v2 AT3G10985 36 34 1.28 A senescence-associated gene CCall_contig27333_v2 AT3G12360 39 34 1.39 protein with an ankyrin motif CCall_contig39986_v2 AT3G12490 39 33 1.44 cysteine proteinase inhibitor activity CCall_contig42078_v2 AT3G12500 73 13 3.69 basic chitinase CCall_contig46415_v2 AT3G23600 72 6 4.78 dienelactone...”

AT5G04730 hypothetical protein from Arabidopsis thaliana
Aligns to 437:551 / 603 (19.1%), covers 99.1% of PF13962, 96.9 bits

• Integrated bioinformatics analysis of As, Au, Cd, Pb and Cu heavy metal responsive marker genes through Arabidopsis thaliana GEO datasets
  Niu, PeerJ 2019
  • “...AT1G21440 AT4G01140 CKX4 AT3G12900 RVE2 AT3G20015 AT1G09750 AT2G40900 AT3G23880 PIP1;5 AGP4 AT3G32040 AT2G01900 AT1G51820 AIR1 AT5G04730 AT5G42860 BT2 CYP71B2 AT5G26280 AT1G24800 AT1G24881 AT1G25055 AT1G25150 AT1G25211 Down-regulated DIN2 WRKY75 AT4G15120 CYP81F2 AT1G73480 AT1G72900 PGPS1 AT5G06730 AT1G35910 CYP81D8 AT3G12320 ATERF6 AT1G12200 AT5G25450 AT4G28460 NILR1 HSP70 APRR9 Fes1A AT3G02800...”
• Investigating the toxicity, uptake, nanoparticle formation and genetic response of plants to gold
  Taylor, PloS one 2014
  • “...glutathione S-transferase 30.8 At4g31940 CYP82C4 cytochrome P450 26.4 At3g61930 hypothetical protein with unknown function 25.8 At5g04730 hypothetical protein with unknown function 25.6 At3g19430 protein with unknown function; abundant in late embryogenesis 23.6 At3g46900 COPT2 copper transport protein 23.4 At3g45710 T6D9.40 proton-dependent oligopeptide transport (POT) family protein...”

AT3G18670 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 432:545 / 598 (19.1%), covers 98.3% of PF13962, 96.0 bits

• Overexpression and cosuppression of xylem-related genes in an early xylem differentiation stage-specific manner by the AtTED4 promoter
  Endo, Plant biotechnology journal 2018
  • “...0.007 0.003 4 At5g19870 2.635 0.128 0 At5g11540 0.021 0.006 2 At1g09610 2.923 0.180 0 At3g18670 0.034 0.026 3 At1g43790 3.013 0.357 0 At1g59850 0.054 0.008 2 At2g37090 3.950 0.308 2 At3g16920 0.064 0.014 2 At1g58070 3.971 0.086 0 At5g45020 0.084 0.014 5 At5g01730 4.272 0.511...”
• ROOT HAIR DEFECTIVE SIX-LIKE4 (RSL4) promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth
  Vijayakumar, The New phytologist 2016
  • “...A1/exocytosis AT1G01800 NADBP NAD(P)binding Rossmannfold superfamily protein/oxidoreductase activity AT3G17090 PP2C Protein phosphatase 2C family protein/dephosphorylation AT3G18670 Ankyrin repeat family protein AT1G26940 CLP Cyclophilinlike protein/protein folding, isomerization AT1G35670 CDPK2/CPK11 Calciumdependent protein kinase/induced by drought and high salt, positive regulator of ABA signalling AT3G27700 Zinc finger (CCCHtype) protein/DNA,...”

AT4G03440 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 547:658 / 751 (14.9%), covers 98.3% of PF13962, 95.7 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...of wheat ANKTMs in class a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in...”
• The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress
  Thatcher, PloS one 2015
  • “...transferase family protein, REDUCED RESIDUAL ARABINOSE 2 AT3G26550 2.08 5.4E-03 Cysteine/Histidine-rich C1 domain family protein AT4G03440 2.03 5.4E-03 Ankyrin repeat family protein AT4G28520 CRU3 2.01 5.6E-03 cruciferin 3 AT3G44713 3.25 5.7E-03 Unknown AT1G13609 2.16 6.3E-03 Defensin-like (DEFL) family protein AT2G07732 2.05 6.5E-03 Ribulose bisphosphate carboxylase large...”

LOC8057765 ankyrin repeat-containing protein NPR4 from Sorghum bicolor
Aligns to 377:484 / 556 (19.4%), covers 99.1% of PF13962, 95.0 bits

• Expression Profile of Sorghum Genes and Cis-Regulatory Elements under Salt-Stress Conditions
  Lee, Plants (Basel, Switzerland) 2022
  • “...K(+) efflux antiporter 3, chloroplastic LOC8078795 UDP-glycosyltransferase 73C5 LOC8084424 putative cyclic nucleotide-gated ion channel 7 LOC8057765 ankyrin repeat-containing protein NPR4 LOC8086217 UDP-glycosyltransferase 83A1 LOC8078619 IQ domain-containing protein IQM1 plants-11-00869-t002_Table 2 Table 2 List of genes commonly down-regulated in both leaves and roots grown under salt stress....”

ACD6_ARATH / Q8LPS2 Protein ACCELERATED CELL DEATH 6 from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
AT4G14400 ACD6 (ACCELERATED CELL DEATH 6); protein binding from Arabidopsis thaliana
NP_567430 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 484:597 / 670 (17.0%), covers 96.6% of PF13962, 94.9 bits

• function: Dose-dependent activator of the defense response against virulent pathogens, including bacteria, fungi and oomycetes, that acts in a positive feedback loop with the defense signal salicylic acid (SA) (PubMed:10488236, PubMed:14507999, PubMed:16297071, PubMed:19144005, PubMed:20520716). Regulates the salicylic acid (SA) signaling pathway leading to cell death and modulating cell fate (e.g. cell enlargement and/or cell division) (PubMed:10488236, PubMed:11722764, PubMed:14507999). In response to SA signaling, triggers the accumulation of FLS2 at the plasma membrane, thus priming defenses (PubMed:24923602). Involved in SA-dependent freezing signaling and tolerance (PubMed:19959255).
  subunit: Component of large complexes containing, at least, FLS2, HSP70 and ACD6 in endoplasmic reticulum, plasma membrane and soluble fraction. Associated with HSP70 proteins during endoplasmic reticulum- associated degradation (ERAD). Reduced complex levels upon benzothiazole (BTH) treatment.
  disruption phenotype: Reduced responsiveness to benzothiazole (BTH) and upon P. syringae infection with reduced salicylic acid (SA) levels and increased disease susceptibility and attenuated defenses (PubMed:14507999). Increased sensitivity to biotrophic fungi (e.g. Golovinomyces orontii T1 and G. cichoracearum UCSC1), biotrophic oomycetes (e.g. Hyaloperonospora arabidopsidis Noco2) and hemi- biotrophic bacteria (e.g. Pseudomonas syringae pv. tomato DC3000) (PubMed:20520716).
• From the archives: Stress signaling-U-box proteins in the cold stress response, sensor activation in response to salt stress, and early work on salicylic acid signaling
  Osborne, The Plant cell 2024
  • “...and functional terms are of significance to the work described in this paper: ACD6 Gramene: AT4G14400 ACD6 Araport: AT4G14400 PUB25 Gramene: AT3G19380 PUB25 Araport: AT3G19380 MYB15 Gramene: AT3G23250 MYB15 Araport: AT3G23250 PUB26 Gramene: AT1G49780 PUB26 Araport: AT1G49780 FLS2 Gramene: AT5G46330 FLS2 Araport: AT5G46330 NPR1 Gramene: AT1G64280...”
• An Extended Application of the Fast Multi-Locus Ridge Regression Algorithm in Genome-Wide Association Studies of Categorical Phenotypes
  Zhang, Plants (Basel, Switzerland) 2024
  • “...DLO2 4 6,474,413 1 2.07 10 6 AT4G10500 DLO1 4 6,474,413 1 2.07 10 6 AT4G14400 ACD6 4 8,276,863 1 2.89 10 4 AT4G12020 WRKY19 4 7,216,346 3 2.58 10 8 AT4G12010 F16J13.80 4 7,216,346 3 2.58 10 8 AT4G26090 RPS2 4 13,224,915~13,225,030 1, 3, 4,...”
• Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought
  Karasov, Nature microbiology 2024
  • “...values are concentrated in a region on chromosome 4 that includes the immune regulator ACD6 (At4g14400). Reference genome positions (in nt) on chromosome 4 given at the bottom. b , Bergelson and colleagues 32 identified A. thaliana SNPs associated with (and likely to influence) microbiome composition....”
• Attenuation of photosynthesis in nanosilver-treated Arabidopsis thaliana is inherently linked to the particulate nature of silver
  Mays, Heliyon 2024
  • “...genes involved in the perception and transduction of stress-related signals, among them PCC1 (AT3G22231), ACD6 (AT4G14400), WAK1 (AT1G21250), ASI-LLP1 (AT5G03350), MIOX4 (AT4G26260), PCR1 (AT1G14880) and three calmodulin-like protein genes (AT2G41090, SAT3G47480, and AT3G50770), all of which were up-regulated in response to AgNP exposure ( Fig. 3...”
• Spatial metatranscriptomics resolves host-bacteria-fungi interactomes
  Saarenpää, Nature biotechnology 2024
  • “...with hotspots for the expression of the defense-related genes CA1 (AT3G01500), LURP1 (AT2G14560) and ACD6 (AT4G14400). NS, not significant. Scale bars: 500 m. Overall, these results show that our system accurately resolves spatial host expression profiles in leaves. However, gene annotation analysis revealed no strong association...”
• Transcriptomic analysis reveals the functions of H₂S as a gasotransmitter independently of Cys in Arabidopsis
  Fang, Frontiers in plant science 2023
  • “..., AT3G26230 , AT3G46280 , AT3G51440 , AT4G11890 , AT4G12470 , AT4G12490 , AT4G12500 , AT4G14400 , AT4G20000 , AT5G01550 , AT5G44575 , AT5G44700 , AT5G45570 , AT5G48540 , AT5G51480 , AT5G64110 , AT5G64120 , AT5G67450 3.5 Function enrichment analysis of H 2 S but not...”
• Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola
  Frommer, Frontiers in plant science 2023
  • “...a region of ~221 kbp. In A. thaliana , a hyperactive allele of AtACD6 ( At4g14400 ) conferred resistance to various pathogens, including microbes and insects ( Todesco etal., 2010 ), making these genes important candidates for P. viticola resistance in grapevine. Also, a DEG (...”
• Identification of multiple novel genetic mechanisms that regulate chilling tolerance in Arabidopsis
  Sahoo, Frontiers in plant science 2022
  • “...tolerance. Sl. No. Gene ID Protein ID 1 Expression Mutant 2 Phenotype 3 Algorithm 1 AT4G14400 Accelerated cell death 6 (ACD6) 0.06 SALK_059132 1.73 Linear Regression SALK_116079 1.46 2 AT5G02360 Domain C1 containing protein 0.09 SALK_004531 1.75 Linear Regression SALK_004524 2.46 3 AT2G18260 AtSYP112 0.14 SALK_037621...”
  • “...only two of the 16 genes identified have previously been reported as chilling tolerance genes: AT4G14400 , which conditions accelerated cell death 6 (ACD6), and At2g31360 , which encodes an acyl-lipid desaturase 2 (ADS2). ACD6 ( AT4G14400 ) is downregulated by cold stress, and its loss...”
• More
• Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana.
  Chen, Molecular cell 2023 (PubMed)
  • GeneRIF: Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana.
• Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene.
  Zhu, PLoS genetics 2018
  • GeneRIF: Study propose that allelic diversity at SNC1 contributes to the maintenance of the hyperactive ACD6 variant in natural A. thaliana populations.
  • GeneRIF: NLR gene can mask the activity of an ACD6 autoimmune allele in natural A. thaliana populations, thereby linking different arms of the plant immune system.
• Salicylic acid signaling controls the maturation and localization of the arabidopsis defense protein ACCELERATED CELL DEATH6.
  Zhang, Molecular plant 2014
  • GeneRIF: Salicylic acid signaling controls the maturation and localization of the arabidopsis defense protein ACCELERATED CELL DEATH6
• Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles.
  Todesco, PLoS genetics 2014
  • GeneRIF: Here we show instead that hybrid necrosis can be triggered by interactions between variants of a single gene, ACD6 (ACCELERATED CELL DEATH 6).
• Salicylic acid regulates Arabidopsis microbial pattern receptor kinase levels and signaling.
  Tateda, The Plant cell 2014
  • GeneRIF: Data indicate protein kinases FLS2 and BAK1 contribute to autoimmune signaling in ACCELERATED CELL DEATH6 (ACD6) L591F amino acid substitution.
• Structure-function analysis of the plasma membrane- localized Arabidopsis defense component ACD6.
  Lu, The Plant journal : for cell and molecular biology 2005 (PubMed)
  • GeneRIF: The effects of mutation on the structure and function of ACD6 in response to salicylic acid and disease resistance are reported.
• ACCELERATED CELL DEATH 6 is a crucial genetic factor shaping the natural diversity of age- and salicylic acid-induced leaf senescence in Arabidopsis.
  Lyu, Physiologia plantarum (PubMed)
  • GeneRIF: ACCELERATED CELL DEATH 6 is a crucial genetic factor shaping the natural diversity of age- and salicylic acid-induced leaf senescence in Arabidopsis.
• Transcriptome and Proteome Association Analysis to Screen Candidate Genes Related to Salt Tolerance in Reaumuria soongorica Leaves under Salt Stress
  Liu, Plants (Basel, Switzerland) 2023
  • “...2.12 up Low-temperature-induced 65 kDa protein P22242 PCC13-62 3.90 up 2.26 up Desiccation-related protein PCC13-62 Q8LPS2 ACD6 6.09 up 2.51 up Protein ACCELERATED CELL DEATH 6 Q94BZ1 ZIFL1 2.80 up 2.79 up Protein ZINC-INDUCED FACILITATOR-LIKE 1 Q55874 sll0103 10.12 up 3.03 up Uncharacterized protein sll0103 O80433...”

AT4G03450 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 453:564 / 641 (17.5%), covers 97.4% of PF13962, 94.7 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...wheat ANKTMs in class a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this...”
• Expression levels of inositol phosphorylceramide synthase modulate plant responses to biotic and abiotic stress in Arabidopsis thaliana
  Pinneh, PloS one 2019
  • “...EF-HAND FAMILY PROTEIN -1.3 3.75E-11 -3.0 3.27E-39 -2.8 4.26E-33 -3.3 6.57E-42 -1.6 4.36E-16 -2.2 5.55E-24 AT4G03450 ANKYRIN REPEAT FAMILY PROTEIN -2.0 3.19E-10 -3.4 9.96E-24 -3.1 1.96E-20 -3.2 1.03E-21 -2.3 8.75E-13 -2.1 1.90E-10 AT4G23150 CYSTEIN-RICH RLK -1.7 5.61E-07 -3.2 1.05E-20 -2.9 5.61E-18 -3.1 5.53E-20 -2.1 1.08E-09 -2.5...”
• RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis
  Sun, Virology journal 2016
  • “...defense-related transcripts, GST11 (glutathione transferase 11), PR1 (pathogenesis-related 1), CRK36 (cysteine-rich receptor-like protein kinase 36), AT4g03450 (ankyrin repeat family protein), WAK1 (cell wall-associated kinase), AT5g10760 (EDS1-dependent 1), AT5g45000 (disease resistance TIR-NBS-LRR protein) were up-regulated at 14 dpi but down-regulated at 21 dpi. These data suggest that...”
  • “...3.59E-04 3.97 5.10E-04 AT3G45860 CRK4 (Encodes a cysteine-rich receptor-like protein kinase) 2.95 6.97E-03 2.62 3.48E-04 AT4G03450 ANK2 (Ankyrin repeat family protein) 2.82 5.93E-04 2.39 1.86E-03 AT4G04490 CRK36 (Encodes a cysteine-rich receptor-like protein kinase) 2.34 7.40E-03 2.28 2.24E-02 AT4G06477 Transposable_element_gene 2.57 4.48E-03 2.30 8.24E-03 AT5G22380 ANAC090 (NAC...”
• Assessing Global Transcriptome Changes in Response to South African Cassava Mosaic Virus [ZA-99] Infection in Susceptible Arabidopsis thaliana
  Pierce, PloS one 2013
  • “...5 ). At 14 dpi, 3 up-regulated genes, namely BGL2 (AT3G57260), Ankyrin repeat family protein (AT4G03450), and BG3 (AT3G57240), and two down-regulated genes, Transcription factor family (TCP) (AT2G45680) and Ethylene response factor 4 DNA binding/transcriptional repressor (ERF4)(AT3G15210) confirmed expression results obtained from microarray data. Induced genes...”
• Finding the undiscovered roles of genes: an approach using mutual ranking of coexpressed genes and promoter architecture-case study: dual roles of thaumatin like proteins in biotic and abiotic stresses
  Deihimi, SpringerPlus 2012
  • “...At1g33220/At2g11010At1g32980/ At1g30473/At1g63540 - - Abiotic/biotic AT4G18250 TLP At1g67800/At2g38290/ At1g08050/At1g79680/ At3g09010/At4g29050/ At3g09405/At4g11850/ 246927_s_at At3g19010/At3g59660At3g28450/ At4g23150 At4g23280/ At4g03450 At1g51890/ At1g51920/At1g26420 At4g26120/At5g26920/ At2g38290/At2g20142/ At2g37910/At1g64250/ 246927_s_at/At1g57630 At1g01340/ At1g43680/At2g23680/ At1g18570/At4g11850 - Abiotic/biotic AT4G24180 TLP At5g03310/At3g25190/ At2g47560/At3g13760 - - - abiotic AT4G36000 TLP - - At2g03360/At4g01890 - Hormone response/biotic AT4G36010 TLP At3g50260/At3g04010/...”
• Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis
  Bricchi, PloS one 2012
  • “...storage/lipid transfer protein (LTP) family protein 6.97 4.87 At1g10340 ankyrin repeat family protein 6.72 2.87 At4g03450 ankyrin repeat family protein 5.44 3.23 At2g47130 short-chain dehydrogenase/reductase (SDR3) 5.00 2.96 At1g23840 unknown protein located in endomembrane system 3.50 2.97 At3g61280 unknown protein 3.45 2.28 At3g48640 unknown protein 5.77...”

AT4G14390 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 512:623 / 694 (16.1%), covers 96.6% of PF13962, 89.2 bits

• A microProtein repressor complex in the shoot meristem controls the transition to flowering
  Rodrigues, Plant physiology 2021
  • “...FDR A/hypomethylated and downregulated genes in miP1a-OX AT4G29030 Putative membrane lipoprotein 67 0 0.0319 1.02E-13 AT4G14390 Ankyrin repeat family protein 60 0 0.1021 1.67E-33 AT2G35380 Peroxidase superfamily protein 58 0 0.0090 5.86E-04 AT1G62510 Bifunctional inhibitor/lipid-transfer protein 56 0 0.0576 2.55E-15 AT3G20865 AGP40 48 0 0.1755 9.67E-04...”
• ACCELERATED CELL DEATH 6 Acts on Natural Leaf Senescence and Nitrogen Fluxes in Arabidopsis
  Jasinski, Frontiers in plant science 2020
  • “...ACD6 ( At4g14400 ) and ACL1 encoding an ACD6 -like ankyrin repeat family protein ( At4g14390 ), are present in this 7.875-kb interval ( Figure 1C and Supplementary Figure 1A ). To investigate the possible role of these two genes in leaf senescence variation between Ct-1...”
• Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene
  Zhu, PLoS genetics 2018
  • “...sequences extracted from the in-house NLR database, using ACD6 (AT4G14400) and the adjacent ACD6 homolog AT4G14390 from Araport II as references. Bacterial infection Pseudomonas syringae pv tomato strain DC3000 was grown to OD 600 around 3.0, collected and resuspended in 10 mM MgCl 2 at 5...”
• Interspecies gene transfer provides soybean resistance to a fungal pathogen
  Langenbach, Plant biotechnology journal 2016
  • “...3.46 1.90 PING5 246373_at At1g51860 Leucinerich repeat protein kinase, putative 1.17 3.07 1.26 PING6 245611_at At4g14390 Ankyrin repeat family protein 1.75 2.94 1.41 PING7 250918_at At5g03610 GDSLmotif lipase/hydrolase family protein 1.79 2.85 1.86 PING8 258942_at At3g09960 Calcineurinlike phosphoesterase family protein 1.04 2.70 1.15 PING9 249476_at At5g38910...”
• Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles
  Todesco, PLoS genetics 2014
  • “...encodes an immune receptor of the TIR-NBS-LRR type; ACD6 (At4g14400); and the adjacent ACD6 paralog At4g14390. We knocked down each gene with artificial microRNAs (amiRNAs; [17] ). Only the amiRNA against ACD6 suppressed leaf necrosis and increased plant size and seed production in hybrids ( Figure...”
  • “...Se-0. Col-0 likely represents the ancestral configuration of the ACD6 region. A partial duplication of At4g14390 and ACD6 followed by a deletion of the 5 portion of ACD6B likely produced first the Bla-1 and then the Se-0 arrangement. Asterisk indicates missing start codon in At4g14390, the...”
• Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
  Todesco, Nature 2010
  • “...Arabidopsis lyrata ( Fig. 4a,b ). The relationship among the three alleles as well as At4g14390, a homolog immediately upstream of ACD6 , is complex, and might involve a history of gene conversion. Eighteen accessions shared ACD6 sequences closely related to the Est-1-like allele. All except...”

AT2G01680 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 344:455 / 532 (21.1%), covers 98.3% of PF13962, 88.6 bits

• The DNA methylation landscape of the root-knot nematode-induced pseudo-organ, the gall, in Arabidopsis, is dynamic, contrasting over time, and critically important for successful parasitism
  Silva, The New phytologist 2022
  • “...0.32 AT1TE81245 OTHER CLASS II AT1G66345 MITOCHONDRIAL INTRON SPLICING FACTOR 26 (MISF26) CG 15 0.56 AT2G01680 Ankyrin repeat family protein CHH 19 0.3 AT2TE01275 SINE AT2G03980 GDSLmotif esterase/acyltransferase/lipase CHH 18 1.07 AT2TE05710 HARBINGER AT2G26135 RING FINGER ABARELATED 9 (RFA9) CHH 22 4.71 AT2TE48010 hAT AT2G31070 TCP...”
• Major QTL with pleiotropic effects controlling time of leaf budburst and flowering-related traits in walnut (Juglans regia L.)
  Bükücü, Scientific reports 2020
  • “...associated with flowering time in the apple that is linked to an ankyrin repeat-containing protein At2g01680 -like, which is the same annotation for the walnut gene WALNUT_00004309 that overlapped with the marker 7394079 in this study. Three markers also associated with QTL05 were linked to MYB...”
• Phylogenomic proof of Recurrent Demipolyploidization and Evolutionary Stalling of the "Triploid Bridge" in Arundo (Poaceae)
  Jike, International journal of molecular sciences 2020
  • “...involved in polar nuclei fusion during proliferation of endosperm nuclei. OG0018170 pa 3.79 9.98 0.009 AT2G01680 NA Ankyrin repeat family protein OG0018204 adf 4.73 6.09 0.028 AT5G08530 CI51 51 kDa subunit of mitochondrial complex I OG0018205 mc 9.25 15.13 0 AT3G15140 ERI-1 Ribonuclease H-like superfamily functioning...”
• Identification of candidates for cyclotide biosynthesis and cyclisation by expressed sequence tag analysis of Oldenlandia affinis
  Qin, BMC genomics 2010
  • “...Oa090 11 protein binding AT1G22970 Oa188 11 asparaginase AT3G16150 Oa134 10 ankyrin repeat family protein AT2G01680 Oa115 9 ribosomal protein L1 family protein AT3G63490 Oa022 8 phosphoribulokinase AT1G32060 Oa186 8 glyceraldehyde-3-phosphate dehydrogenase AT1G12900 *The cyclotides precursors are highlighted. Identification of ESTs involved in cyclotide biosynthesis Although...”

AT4G03490 protein binding from Arabidopsis thaliana
Aligns to 389:499 / 662 (16.8%), covers 97.4% of PF13962, 82.6 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this study are AtANKTM4-1 ,...”

AT4G03470 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 490:601 / 683 (16.4%), covers 95.7% of PF13962, 82.1 bits

• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...in class a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this study are...”
• Cell wall composition and transcriptomics in stem tissues of stinging nettle (Urtica dioica L.): Spotlight on a neglected fibre crop
  Xu, Plant direct 2019
  • “...on bast fibre developmental aspects. The genes belonging to the response to SA stimulus are AT4G03470 , SAG29 , WRKY70 (Data S1 ). These genes are likely related to senescence, since SA was shown to regulate leaf senescence (Morris etal., 2000 ) and SAG29 (a.k.a SWEET15...”
  • “...) and can be involved in the transfer of sucrose to the thickening bast fibres. AT4G03470 codes for an ankyrincontaining protein responding to SA stimulus; WRKY70 is a regulator of the SA and jasmonic acid (JA) responses and acts by repressing the latter (Li, Brader, Kariola,...”

GRMZM2G088778 uncharacterized protein LOC100501682 from Zea mays
Aligns to 463:571 / 663 (16.4%), covers 97.4% of PF13962, 81.8 bits

• Genetic resources and breeding of maize for Striga resistance: a review
  Dossa, Frontiers in plant science 2023
  • “...damage GRMZM5G873586 GRMZM2G356817 10 Striga damage GRMZM2G364748 10 Striga damage GRMZM2G017470 1 Striga emergence count GRMZM2G088778 2 Striga emergence count GRMZM2G179505 2 Striga emergence count GRMZM2G701566 3 Striga emergence count GRMZM2G129543 5 Striga emergence count GRMZM5G823157 5 Striga emergence count GRMZM2G033413 9 Striga emergence count GRMZM2G006948...”
• Association analysis for resistance to Striga hermonthica in diverse tropical maize inbred lines
  Stanley, Scientific reports 2021
  • “...plants at 8 and 10 WAP S1_298950342 298950342 GRMZM2G017470 Dof zinc finger protein S2_135038935 135038935 GRMZM2G088778 Protein ACCELERATED CELL DEATH 6 S2_208978140 208978140 GRMZM2G179505 hydrolase/ protein serine/threonine phosphatase S3_74335447 74335447 GRMZM2G701566 uncharacterized LOC100382572 S5_148751913 148751913 GRMZM2G129543 peroxidase 70 S5_204969099 204969099 GRMZM5G823157 probable WRKY transcription factor 14...”

XP_003593806 uncharacterized protein LOC11446096 from Medicago truncatula
Aligns to 486:599 / 665 (17.1%), covers 97.4% of PF13962, 76.9 bits

• Regulation of compound leaf development by PHANTASTICA in Medicago truncatula.
  Ge, Plant physiology 2014
  • GeneRIF: PHAN protein is required to maintain petiole identity.PHAN maintains proper leaf margin development and lateral leaflet placement.

AT4G03480 protein binding from Arabidopsis thaliana
Aligns to 583:655 / 655 (11.1%), covers 63.8% of PF13962, 72.8 bits

• Bacterial Volatiles (mVOC) Emitted by the Phytopathogen Erwinia amylovora Promote Arabidopsis thaliana Growth and Oxidative Stress
  Parmagnani, Antioxidants (Basel, Switzerland) 2023
  • “...116 ]. Among defense genes, DIP2 is involved in viral resistance [ 117 ], whereas AT4G03480 is an ankyrin repeat-containing protein that mediates proteinprotein interactions [ 118 ]. Validation of microarray data was done by selecting three of the most downregulated genes ( SESA1 , SESA2,...”
• Identification of ankyrin-transmembrane-type subfamily genes in Triticeae species reveals TaANKTM2A-5 regulates powdery mildew resistance in wheat
  Hu, Frontiers in plant science 2022
  • “...class a. Previous studies indicate that the seven ANKTM -type genes At4g03440, At4g03450, At4g03460, At4g03470, At4g03480, At4g03490 and At4g03500 on chromosome 4, are tandem duplicated genes, which are linked and clustered tightly ( Du et al., 2007 ). The seven genes in this study are AtANKTM4-1...”
• Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
  Coleman-Derr, PLoS genetics 2012
  • “...average percent methylation for five selected loci: At1g69850 (a nitrate transporter), At3g22340 (a COPIA-like retrotransposon), At4g03480 (an ankyrin-repeat-containing protein), At4g38190 (a cellulose synthase) and At5g37450 (a protein kinase). Percent methylation scores were determined by either locus-specific bisulfite sequencing (BS-PCR) or through in silico extraction of relevant...”
• Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
  Zilberman, Nature 2008
  • “...transporter), At3g22340 (a COPIA-like retrotransposon), At4g03480 (an ankyrin-repeat-containing protein), At4g38190 (a cellulose synthase) and At5g37450 (a...”
  • “...Low L At4g38190 At5g37450 cen5 0 At1g69850 At3g22340 At4g03480 At4g38190 At5g37450 3 e 1.2 WT H2A.Z (BLRP-1) -1 -2 Unmethylated genes pie1 hypermethylated genes...”

AT4G05040 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 494:571 / 572 (13.6%), covers 64.7% of PF13962, 70.2 bits

• AtDRO1 is nuclear localized in root tips under native conditions and impacts auxin localization
  Waite, Plant molecular biology 2020
  • “...protein 12.23 3.72E02 AT4G01060 CPL3 CAPRICE-like MYB3 11.08 3.45E02 AT4G27530 AT4G27530 Unknown protein 9.32 7.37E03 AT4G05040 AT4G05040 Ankyrin repeat family protein 8.86 3.54E04 AT1G02850 BGLU11 Beta glucosidase 11 8.7 2.26E02 AT3G62650 AT3G62650 Unknown protein 8.46 3.23E02 AT5G59810 SBT5.4 Subtilase family protein 7.94 4.02E02 AT4G32080 AT4G32080 Unknown...”
• Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana
  Wan, Genome biology 2015
  • “...of transcription AT1G80270, AT2G45730 Protein synthesis, modification, or proteolysis AT3G28500, AT3G27110, AT2G40205, AT2G23890, AT2G45730, AT1G07070, AT4G05040, AT2G01830, AT2G27900, [ 18 , 86 , 87 ] ATP binding, ATPase or kinase activity AT3G01200, AT2G14080 Signaling transduction AT2G27900, AT2G14080, AT2G01830 [ 78 , 88 ] Carbohydrate metabolism or...”

AT3G13950 hypothetical protein from Arabidopsis thaliana
Aligns to 27:154 / 207 (61.8%), covers 98.3% of PF13962, 64.6 bits

• pH-dependent transcriptional profile changes in iron-deficient Arabidopsis roots
  Tsai, BMC genomics 2020
  • “...UGT73B4, UDP-GLYCOSYLTRANSFERASE 73B4 0.05 3.06 0.02 AT5G06860 PGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1 0.06 4.10 0.01 AT3G13950 Ankyrin 0.06 7.14 0.01 AT1G17170 ATGSTU24, GLUTATHIONE S-TRANSFERASE TAU 24 0.13 18.19 0.01 AT5G22890 STOP2, SENSITIVE TO PROTON RHIZOTOXICITY 2 0.01 2.09 0.01 AT1G05680 UGT74E2, uridine diphosphate glycosyltransferase 74E2 0.01...”
• ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana
  Balazadeh, Molecular plant 2011
  • “...( Arabidopsis thaliana ) (TAIR:AT3G21550.1) 1.61 2.37 257774_at AT3G29250 * # Oxidoreductase 2.25 2.82 258203_at AT3G13950 * Similar to unknown protein ( Arabidopsis thaliana ) (TAIR:AT4G13266.1) 2.34 1.93 258957_at AT3G01420 * ALPHA-DOX1 (ALPHA-DIOXYGENASE 1) 1.69 2.44 260225_at AT1G74590 * ATGSTU10 ( Arabidopsis thaliana Glutathione S-transferase (class...”
• DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana
  Fulton, PLoS genetics 2009
  • “...Expressed protein Unknown At1g13470 Hypothetical protein Unknown At1g52970 Hypothetical protein Unknown At1g56060 Hypothetical protein Unknown At3g13950 Hypothetical protein Unknown At3g14850 Hypothetical protein Unknown At3g48640 Hypothetical protein Unknown At3g48650 Hypothetical protein, predicted pseudogene Unknown At4g23610 Hypothetical protein Unknown At5g19240 Hypothetical protein Unknown At2g18680 Unknown protein Unknown At2g14560...”

AT4G11000 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 246:390 / 406 (35.7%), covers 63.8% of PF13962, 56.6 bits

• Dark period transcriptomic and metabolic profiling of two diverse Eutrema salsugineum accessions
  Yin, Plant direct 2018
  • “...SH AT5G56920 Cystatin/monellin superfamily protein Thhalv10029390m.g 0 83 Absent in SH Not detected in SH AT4G11000 Ankyrin repeat family protein Thhalv10021522m.g 1 244 7.9 144.9 AT3G16660 Pollen Ole e 1 allergen and extensin family protein Thhalv10014718m.g 1 86 6.4 11.8 AT5G07470 Peptide methionine sulfoxide reductase 3...”
  • “...5.2 Not tested AT5G44430 Plant defensin 1.2C Thhalv10029246m.g 0 47 Absent in SH Not tested AT4G11000 Ankyrin repeat family protein XLOC_004723 187 16 3.5 Not tested ATCG01020 Ribosomal protein L32 John Wiley & Sons, Ltd To confirm DEGs based on RNAseq, we designed qRTPCR primers that...”

NP_974540 ankyrin repeat protein from Arabidopsis thaliana
AT4G13266 hypothetical protein from Arabidopsis thaliana
Aligns to 29:157 / 221 (58.4%), covers 96.6% of PF13962, 52.7 bits

• A stigmatic gene confers interspecies incompatibility in the Brassicaceae.
  Fujii, Nature plants 2019 (PubMed)
  • GeneRIF: SPRI1(AT4G13266) functions as a barrier mechanism that permits entrance of pollen with an intrinsic signal from self species.
• A stigmatic gene confers interspecies incompatibility in the Brassicaceae
  Fujii, Nature plants 2019 (PubMed)
  • “...SNP with the strongest association was located in At4g13266 (Fig. 1d), a previously uncharacterized gene encoding a 221-amino-acid protein. Stigmatic Privacy 1...”
  • “...another species. We expressed a fusion protein comprising At4g13266 with the fluorescent protein Venus at its C-terminus in leaf epidermal cells or stigma. In...”

AT1G14500 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 283:397 / 436 (26.4%), covers 64.7% of PF13962, 45.3 bits

• Identification of Quantitative Trait Loci Controlling the Development of Prickles in Eggplant by Genome Re-sequencing Analysis
  Qian, Frontiers in plant science 2021
  • “...rpc1-like isoform X1 SMEL_012g394390 12 92893127 92893897 AT5G60030 DNA ligase 1-like SMEL_012g394400 12 92896532 92897452 AT1G14500 Chitinase 1-like SMEL_012g394410 12 92898771 92899691 AT5G23390 Chitinase 2-like SMEL_012g394420 12 92902268 92903728 AT2G41475 Uncharacterized protein LOC104644786 SMEL_012g394430 12 92919594 92921639 AT2G28610 WUSCHEL-related homeobox 3-like SMEL_012g394440 12 92944508 92947244 AT2G28610...”
• De Novo Transcriptome Sequencing of Rough Lemon Leaves (Citrus jambhiri Lush.) in Response to Plenodomus tracheiphilus Infection
  Russo, International journal of molecular sciences 2021
  • “...isoform X1 AT5G06950 +3.44 70% 5 10 102 14701,40930 BAD1 Ankyrin repeat family protein BAD1 AT1G14500 +3.18 75% 2 10 7 19125,1 RIN4 RPM1 interacting protein 4 AT3G25070 4.22 69% 2 10 14 14701,27598 RBOHF respiratory burst oxidase protein F AT1G64060 +2.41 75% 0.0 14701,78394 RBOHB...”

AT2G24600 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 398:455 / 548 (10.6%), covers 40.5% of PF13962, 40.3 bits

• Transcriptome Analysis of Four Arabidopsis thaliana Mediator Tail Mutants Reveals Overlapping and Unique Functions in Gene Regulation
  Dolan, G3 (Bethesda, Md.) 2018
  • “...AT4G29780 1.08 3.69E-04 unkown protein AT5G26920 1.02 1.96E-04 CAM-BINDING PROTEIN 60-LIKE G ( CBP60G ) AT2G24600 1.00 7.72E-05 Ankyrin repeat family protein a Benjamini-Hochberg-corrected P value. b Genes that are differentially expressed in med23 but not the other med mutants. Figure 9 Expression of the MED5ab...”
• Signal molecules mediate the impact of the earthworm Aporrectodea caliginosa on growth, development and defence of the plant Arabidopsis thaliana
  Puga-Freitas, PloS one 2012
  • “...family protein 0,99 1,15E-9 AT2G40140 CZF1/ZFAR1 0,68 4,90E-3 AT3G16530 legume lectin family protein 1,00 5,9E-10 AT2G24600 ankyrin repeat family protein 0,69 3,95E-3 AT1G80840 WRKY40 1,04 6,2E-11 AT5G06320 NHL3 (NDR1/HIN1-like 3) 0,70 2,73E-3 AT3G04720 PR4 (PATHOGENESIS-RELATED 4) 1,04 4,6E-11 AT5G56870 beta-galactosidase, putative/lactase, putative 0,70 2,66E-3 AT4G12480 pEARLI...”
• Acireductone dioxygenase 1 (ARD1) is an effector of the heterotrimeric G protein beta subunit in Arabidopsis
  Friedman, The Journal of biological chemistry 2011
  • “...AGB1, At4g34460; ARD1, At4g14716; ARD2, At4g14710; ARD3, At2g24600; ARD4, At5g43850. Hypocotyl and Hook Assays and Epidermal Cell Counting-- Seeds were...”
• Novel thigmomorphogenetic responses in Carica papaya: touch decreases anthocyanin levels and stimulates petiole cork outgrowths
  Porter, Annals of botany. 2009
  • “...(TCH1) At1g66090 At3g08720 At1g80840 At4g23810 At4g31800 At2g24600 At1g19180 At5g37770 (TCH2) At1g27730 At1g73540 At1g23710 At2g41100 (TCH3) At1g17380 At4g01250...”

AT5G15500 ankyrin repeat family protein from Arabidopsis thaliana
Aligns to 284:386 / 457 (22.5%), covers 64.7% of PF13962, 40.2 bits

• Characteristics of SlCML39, a Tomato Calmodulin-like Gene, and Its Negative Role in High Temperature Tolerance of Arabidopsis thaliana during Germination and Seedling Growth
  Ding, International journal of molecular sciences 2021
  • “...MKK5 MAP kinase kinase 5 AT5G15960 * , ** 1.10 0.001 KIN1 Stress-responsive protein (KIN1) AT5G15500 * , ** 1.07 0.000 Ankyrin repeat family protein AT5G67480 * , ** 1.07 0.001 ATBT4 BTB and TAZ domain protein 4 AT3G27250 * , ** 1.06 0.009 DIL4 ABA-induced...”

AT1G03660 hypothetical protein from Arabidopsis thaliana
Aligns to 2:89 / 107 (82.2%), covers 67.2% of PF13962, 39.1 bits

• Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis
  Ito, PLoS genetics 2015
  • “...ddm1 haplotype was determined by stably hypomethylated markers. Three loci ( AT1G73177 , AT2G39540 and AT1G03660 ) are localized near telomere with only one reference marker flanking them. In the other loci, every plants showed consistent haplotype for the markers flanking both sides, except for line...”
  • “...data file. S23 Fig The haplotypes of epiRILs that showed increase of cytosine methylation ( AT1G03660 ). See legend of S18 Fig for details. (TIF) Click here for additional data file. S24 Fig Ectopic non-CG methylation found in epiRIL98. Genome browser views of CHG methylation in...”
• DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
  Dubin, eLife 2015
  • “...1_7614101 AT1G21760 F-BOX PROTEIN 7 (FBP7) putative translation regulator in temperature stress response 8.54E-04 1_912291 AT1G03660 Ankyrin-repeat containing protein 1.26E-10 1_912291 AT1G03770 RING1B protein with similarity to polycomb repressive core complex1 (PRC1) 5.76E-07 1_912291 AT1G03940 HXXXD-type acyl-transferase family protein 1.18E-06 1_912291 AT1G03610 Protein of unknown function...”

LOC107766257 receptor-like protein kinase HSL1 from Nicotiana tabacum
Aligns to 45:136 / 393 (23.4%), covers 72.4% of PF13962, 29.8 bits

• Plant Soft Rot Development and Regulation from the Viewpoint of Transcriptomic Profiling
  Tsers, Plants (Basel, Switzerland) 2020
  • “...HSL kinases involved in floral organ abscission, for which one-half of the DEGs were upregulated (LOC107766257, LOC107797502, LOC107798498, LOC107762879, LOC107804687, LOC107778576, LOC107777593, LOC107774291, and LOC107765352). Pba is known to be unable to induce effector-triggered immunity (ETI) mediated by plant R genes . However, despite the fact...”

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